Wall clock time and date at job start Tue Mar 31 2020 20:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00228 * 2 1 4 4 H 1.08994 * 110.88297 * 32.42890 * 3 2 1 5 5 C 1.55159 * 111.00049 * 268.54789 * 3 2 1 6 6 C 1.54324 * 102.94134 * 206.38348 * 5 3 2 7 7 N 1.47020 * 107.39983 * 22.11770 * 6 5 3 8 8 C 1.34780 * 125.64983 * 181.10309 * 7 6 5 9 9 O 1.21276 * 120.00190 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99770 * 0.02562 * 8 7 6 11 11 C 1.52998 * 109.47111 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47111 * 179.97438 * 11 10 8 13 13 C 1.39873 * 126.03397 * 90.02597 * 12 11 10 14 14 C 1.50700 * 125.90516 * 359.95825 * 13 12 11 15 15 N 1.30843 * 108.20002 * 179.97438 * 13 12 11 16 16 N 1.40087 * 108.20140 * 0.02562 * 15 13 12 17 17 C 1.46503 * 126.03505 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47322 * 90.02038 * 17 16 15 19 19 H 1.08000 * 119.99911 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00307 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00107 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99568 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47369 * 90.00022 * 22 20 18 24 24 H 1.48506 * 109.46695 * 209.99932 * 22 20 18 25 25 H 1.48501 * 109.47213 * 329.99414 * 22 20 18 26 26 C 1.34941 * 107.92701 * 359.75543 * 16 15 13 27 27 C 1.50707 * 126.12756 * 180.23956 * 26 16 15 28 28 C 1.47743 * 108.53125 * 1.18235 * 7 6 5 29 29 H 1.08997 * 109.47164 * 59.99709 * 1 2 3 30 30 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46905 * 299.99962 * 1 2 3 32 32 H 1.09004 * 110.72010 * 88.02138 * 5 3 2 33 33 H 1.08995 * 110.87585 * 324.81986 * 5 3 2 34 34 H 1.09002 * 109.88322 * 141.61300 * 6 5 3 35 35 H 1.09000 * 109.88025 * 262.62465 * 6 5 3 36 36 H 1.08992 * 109.47408 * 300.00360 * 10 8 7 37 37 H 1.09005 * 109.47188 * 60.00318 * 10 8 7 38 38 H 1.09002 * 109.47237 * 299.99989 * 11 10 8 39 39 H 1.08997 * 109.46937 * 60.00419 * 11 10 8 40 40 H 1.09001 * 109.46656 * 89.99800 * 14 13 12 41 41 H 1.09001 * 109.47048 * 210.00061 * 14 13 12 42 42 H 1.08994 * 109.46687 * 330.00251 * 14 13 12 43 43 H 1.08997 * 109.47268 * 210.02172 * 17 16 15 44 44 H 1.09005 * 109.47083 * 330.02629 * 17 16 15 45 45 H 0.97000 * 119.99914 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46949 * 270.18455 * 27 26 16 47 47 H 1.09002 * 109.46965 * 30.17881 * 27 26 16 48 48 H 1.09000 * 109.47302 * 150.17783 * 27 26 16 49 49 H 1.09003 * 110.29227 * 216.94505 * 28 7 6 50 50 H 1.08996 * 110.53057 * 94.67717 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2700 1.7985 -1.4481 6 6 3.4387 2.7906 -1.2710 7 7 4.1195 2.4481 -0.0138 8 6 5.1807 3.0958 0.5067 9 8 5.6639 2.7238 1.5550 10 6 5.7668 4.2825 -0.2140 11 6 6.9523 4.8293 0.5838 12 6 7.5387 6.0156 -0.1372 13 6 7.1617 7.3515 0.0343 14 6 6.0961 7.8555 0.9732 15 7 7.8938 8.0882 -0.7615 16 7 8.7607 7.2429 -1.4660 17 6 9.7511 7.6600 -2.4616 18 6 11.0631 7.9442 -1.7767 19 1 11.1505 7.8254 -0.7068 20 6 12.1521 8.3547 -2.5160 21 7 13.2971 8.6021 -1.9183 22 14 12.0010 8.5594 -4.3666 23 1 11.5791 9.9486 -4.6782 24 1 13.3144 8.2862 -5.0037 25 1 10.9896 7.6058 -4.8892 26 6 8.5265 5.9771 -1.0612 27 6 9.2358 4.7415 -1.5525 28 6 3.4462 1.2748 0.5803 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.3909 2.3053 -1.8464 33 1 2.5616 0.9704 -2.0939 34 1 4.1333 2.6981 -2.1059 35 1 3.0552 3.8097 -1.2191 36 1 6.1049 3.9758 -1.2038 37 1 5.0076 5.0584 -0.3137 38 1 6.6136 5.1361 1.5734 39 1 7.7115 4.0537 0.6839 40 1 6.5422 8.0800 1.9421 41 1 5.6471 8.7595 0.5616 42 1 5.3283 7.0915 1.0949 43 1 9.8882 6.8640 -3.1934 44 1 9.4020 8.5611 -2.9660 45 1 14.0632 8.8913 -2.4384 46 1 8.7066 4.3378 -2.4158 47 1 10.2558 4.9978 -1.8389 48 1 9.2580 3.9952 -0.7583 49 1 3.4185 1.3646 1.6663 50 1 3.9535 0.3550 0.2893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361027867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:00 Heat of formation + Delta-G solvation = -39.599035 kcal Electronic energy + Delta-G solvation = -28774.587992 eV Core-core repulsion = 24802.250210 eV Total energy + Delta-G solvation = -3972.337783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.19223 -41.11733 -39.38307 -37.29173 -36.09679 -34.86302 -34.24761 -32.41168 -31.69002 -30.74315 -29.98413 -28.21166 -27.73585 -27.13672 -25.45022 -24.17841 -23.31425 -22.11985 -20.39652 -20.23694 -20.05728 -19.25022 -18.26290 -18.13027 -17.29409 -16.72765 -16.55905 -16.27131 -15.98691 -15.84587 -15.60761 -15.41338 -14.89498 -14.70148 -14.59667 -14.27484 -14.16786 -14.04588 -13.86046 -13.62042 -13.54399 -13.40837 -13.30298 -13.20008 -12.93784 -12.82677 -12.77268 -12.53276 -12.50424 -12.48833 -12.30781 -11.96366 -11.90416 -11.81549 -11.63571 -11.18973 -10.92351 -10.90662 -10.58060 -9.83275 -9.70757 -9.01890 -8.42724 -6.54041 1.14113 1.31943 1.35217 1.44521 1.62161 1.73378 1.90019 1.99877 2.24338 2.86044 2.89598 3.39152 3.59992 3.76403 3.88261 3.92541 3.98145 4.17952 4.22447 4.26175 4.31659 4.34683 4.51201 4.52903 4.56137 4.58825 4.61222 4.64171 4.71116 4.73047 4.76177 4.77376 4.85389 4.86345 4.91601 4.92296 4.99390 5.03877 5.11083 5.13180 5.21886 5.24576 5.32098 5.40238 5.51592 5.92011 6.05865 6.20453 6.41303 6.45623 6.51086 7.06094 7.10562 7.13965 8.74107 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.002130 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.601991 B =13142.139855 C =13522.068024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.080 3.920 4 H 0.091 0.909 5 C -0.147 4.147 6 C 0.095 3.905 7 N -0.621 5.621 8 C 0.531 3.469 9 O -0.582 6.582 10 C -0.115 4.115 11 C -0.006 4.006 12 C -0.257 4.257 13 C 0.057 3.943 14 C -0.063 4.063 15 N -0.346 5.346 16 N -0.355 5.355 17 C 0.242 3.758 18 C -0.551 4.551 19 H 0.020 0.980 20 C 0.019 3.981 21 N -0.938 5.938 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.233 1.233 26 C 0.081 3.919 27 C -0.090 4.090 28 C 0.106 3.894 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.273 0.727 46 H 0.102 0.898 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.121 -16.186 -2.315 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.021 3.979 4 H 0.109 0.891 5 C -0.184 4.184 6 C -0.027 4.027 7 N -0.356 5.356 8 C 0.322 3.678 9 O -0.462 6.462 10 C -0.155 4.155 11 C -0.045 4.045 12 C -0.268 4.268 13 C -0.108 4.108 14 C -0.122 4.122 15 N -0.169 5.169 16 N -0.135 5.135 17 C 0.121 3.879 18 C -0.589 4.589 19 H 0.038 0.962 20 C -0.181 4.181 21 N -0.576 5.576 22 Si 0.774 3.226 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.156 1.156 26 C -0.048 4.048 27 C -0.148 4.148 28 C -0.017 4.017 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.120 0.880 47 H 0.078 0.922 48 H 0.112 0.888 49 H 0.088 0.912 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -28.148 -15.212 -2.293 32.077 hybrid contribution 0.684 -0.074 0.007 0.688 sum -27.464 -15.286 -2.286 31.514 Atomic orbital electron populations 1.22997 0.78889 1.03993 1.01189 1.87860 1.21859 1.26963 1.95066 1.23188 0.92960 0.85302 0.96473 0.89128 1.23149 0.98814 0.99555 0.96926 1.22278 0.94608 1.00298 0.85527 1.48538 1.31004 1.31121 1.24963 1.20864 0.78306 0.84079 0.84596 1.90699 1.61478 1.68660 1.25345 1.21594 0.98861 0.94760 1.00262 1.19377 0.95735 0.92501 0.96870 1.19688 1.05051 0.95252 1.06824 1.22784 0.98201 0.92123 0.97739 1.20215 0.94210 1.02077 0.95672 1.77202 1.07604 1.19486 1.12611 1.48674 1.28476 1.04165 1.32176 1.19676 0.84456 0.97454 0.86299 1.21271 0.95078 1.48264 0.94329 0.96191 1.25888 0.93952 0.93257 1.04968 1.70043 1.02688 1.45939 1.38945 0.85643 0.79213 0.80234 0.77483 1.19074 1.19848 1.15628 1.21444 0.97649 0.87909 0.97770 1.20528 0.99515 0.91860 1.02917 1.22082 0.92251 0.88930 0.98480 0.92447 0.88577 0.93125 0.87400 0.89644 0.89757 0.89060 0.87589 0.87012 0.91258 0.92025 0.90708 0.90761 0.88288 0.91264 0.93780 0.91741 0.87961 0.92182 0.88783 0.91235 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.89 113.37 1.23 1.41 16 2 O -0.40 -5.33 10.52 -148.98 -1.57 -6.90 16 3 C 0.08 0.90 3.49 31.99 0.11 1.01 16 4 H 0.09 0.81 7.90 -2.39 -0.02 0.79 16 5 C -0.15 -1.10 6.69 31.78 0.21 -0.89 16 6 C 0.09 0.92 6.48 86.73 0.56 1.48 16 7 N -0.62 -10.74 3.34 -810.98 -2.71 -13.45 16 8 C 0.53 12.22 7.85 87.66 0.69 12.91 16 9 O -0.58 -18.53 16.25 -3.02 -0.05 -18.58 16 10 C -0.12 -2.30 4.87 29.85 0.15 -2.16 16 11 C -0.01 -0.16 4.45 29.85 0.13 -0.02 16 12 C -0.26 -8.73 5.35 -20.14 -0.11 -8.83 16 13 C 0.06 2.07 7.22 43.10 0.31 2.38 16 14 C -0.06 -1.64 10.12 71.24 0.72 -0.91 16 15 N -0.35 -15.70 12.58 -47.38 -0.60 -16.29 16 16 N -0.35 -16.26 3.60 -338.40 -1.22 -17.48 16 17 C 0.24 11.62 4.88 85.63 0.42 12.04 16 18 C -0.55 -32.24 9.94 25.60 0.25 -31.98 16 19 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 20 C 0.02 1.08 5.47 84.66 0.46 1.54 16 21 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 22 Si 0.95 41.32 27.47 68.60 1.88 43.21 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 26 C 0.08 3.13 6.93 41.41 0.29 3.41 16 27 C -0.09 -2.79 9.68 71.24 0.69 -2.10 16 28 C 0.11 1.81 6.66 86.79 0.58 2.39 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.27 8.11 -2.38 -0.02 0.25 16 32 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.07 1.91 7.88 -2.39 -0.02 1.89 16 39 H 0.06 1.78 7.09 -2.39 -0.02 1.77 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.10 1.92 7.92 -2.39 -0.02 1.90 16 43 H 0.07 2.98 6.73 -2.39 -0.02 2.97 16 44 H 0.04 2.10 7.57 -2.38 -0.02 2.08 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.06 2.13 7.74 -2.39 -0.02 2.12 16 48 H 0.09 2.56 7.14 -2.39 -0.02 2.54 16 49 H 0.07 1.38 8.05 -2.39 -0.02 1.36 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -80.93 409.64 3.61 -77.33 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.86 Total: 18.14 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 6.70 Total: -8.34 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -4.22 Total: -104.86 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.62 Total: -25.47 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.88 Total: 43.21 kcal Total: -80.93 3.61 -77.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361027867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.727 kcal (2) G-P(sol) polarization free energy of solvation -80.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds