Wall clock time and date at job start Tue Mar 31 2020 20:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30838 * 125.89869 * 2 1 4 4 N 1.40085 * 108.20455 * 180.25476 * 3 2 1 5 5 C 1.46505 * 126.03932 * 179.70161 * 4 3 2 6 6 C 1.50703 * 109.46662 * 270.02393 * 5 4 3 7 7 H 1.07999 * 119.99900 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99728 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00088 * 359.97438 * 8 6 5 10 10 Si 1.86810 * 119.99957 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46980 * 89.99736 * 10 8 6 12 12 H 1.48499 * 109.47017 * 209.99990 * 10 8 6 13 13 H 1.48498 * 109.46667 * 330.00279 * 10 8 6 14 14 C 1.34951 * 107.92645 * 359.71782 * 4 3 2 15 15 C 1.50701 * 126.12833 * 179.97438 * 14 4 3 16 16 C 1.35323 * 107.74365 * 359.97438 * 14 4 3 17 17 C 1.50696 * 126.03575 * 179.97438 * 16 14 4 18 18 C 1.53005 * 109.46818 * 90.00566 * 17 16 14 19 19 C 1.50697 * 109.46837 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00495 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99839 * 180.02562 * 19 18 17 22 22 C 1.47424 * 125.65177 * 0.03632 * 21 19 18 23 23 C 1.54908 * 104.83608 * 204.09682 * 22 21 19 24 24 C 1.55154 * 101.58228 * 322.98892 * 23 22 21 25 25 C 1.47030 * 125.64848 * 180.02562 * 21 19 18 26 26 H 1.08995 * 109.88014 * 59.40085 * 25 21 19 27 27 C 1.52997 * 109.88101 * 298.38922 * 25 21 19 28 28 O 1.42898 * 109.47319 * 295.00314 * 27 25 21 29 29 H 1.08998 * 109.46994 * 270.21440 * 1 2 3 30 30 H 1.09003 * 109.46875 * 30.21304 * 1 2 3 31 31 H 1.08999 * 109.46533 * 150.21311 * 1 2 3 32 32 H 1.08999 * 109.47009 * 30.01691 * 5 4 3 33 33 H 1.08994 * 109.47521 * 150.02728 * 5 4 3 34 34 H 0.97000 * 119.99969 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46663 * 270.02699 * 15 14 4 36 36 H 1.09000 * 109.47187 * 30.02225 * 15 14 4 37 37 H 1.08993 * 109.47129 * 150.02576 * 15 14 4 38 38 H 1.08999 * 109.47695 * 330.00611 * 17 16 14 39 39 H 1.08999 * 109.46791 * 209.99973 * 17 16 14 40 40 H 1.08999 * 109.46950 * 59.99589 * 18 17 16 41 41 H 1.08999 * 109.46956 * 299.99307 * 18 17 16 42 42 H 1.09006 * 110.36593 * 322.94162 * 22 21 19 43 43 H 1.09006 * 110.36572 * 85.25886 * 22 21 19 44 44 H 1.08995 * 111.00638 * 81.06979 * 23 22 21 45 45 H 1.09003 * 111.00014 * 204.91689 * 23 22 21 46 46 H 1.08998 * 110.72352 * 277.13939 * 24 23 22 47 47 H 1.08998 * 110.71866 * 153.86307 * 24 23 22 48 48 H 1.09002 * 109.47153 * 175.00006 * 27 25 21 49 49 H 1.09001 * 109.46832 * 55.00197 * 27 25 21 50 50 H 0.96701 * 113.99881 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0059 5 6 4.7900 1.5007 -0.0141 6 6 5.1872 1.7950 -1.4377 7 1 4.6171 1.3778 -2.2546 8 6 6.2784 2.5967 -1.6973 9 7 6.9723 3.1051 -0.7025 10 14 6.7713 2.9609 -3.4620 11 1 6.0730 4.1858 -3.9282 12 1 8.2396 3.1709 -3.5325 13 1 6.3927 1.8155 -4.3280 14 6 3.6143 -0.7154 -0.0031 15 6 4.8351 -1.5990 -0.0081 16 6 2.3271 -1.1330 0.0049 17 6 1.8600 -2.5658 0.0099 18 6 1.7100 -3.0481 1.4542 19 6 1.2422 -4.4807 1.4592 20 8 1.0484 -5.0591 0.4110 21 7 1.0393 -5.1191 2.6286 22 6 1.2343 -4.5387 3.9697 23 6 1.4850 -5.7549 4.8957 24 6 0.5225 -6.8108 4.2906 25 6 0.5864 -6.5099 2.7783 26 1 1.2924 -7.1838 2.2932 27 6 -0.8016 -6.6749 2.1561 28 8 -1.7477 -5.8932 2.8881 29 1 -0.3633 0.0038 1.0276 30 1 -0.3633 0.8881 -0.5172 31 1 -0.3632 -0.8919 -0.5105 32 1 4.5592 2.4343 0.4990 33 1 5.6122 0.9992 0.4962 34 1 7.7402 3.6689 -0.8851 35 1 5.1239 -1.8137 -1.0369 36 1 5.6539 -1.0901 0.5005 37 1 4.6103 -2.5320 0.5085 38 1 2.5905 -3.1880 -0.5069 39 1 0.8983 -2.6361 -0.4983 40 1 0.9794 -2.4258 1.9710 41 1 2.6716 -2.9778 1.9624 42 1 2.0986 -3.8744 3.9735 43 1 0.3399 -4.0006 4.2839 44 1 2.5208 -6.0881 4.8314 45 1 1.2138 -5.5240 5.9259 46 1 -0.4900 -6.6716 4.6694 47 1 0.8777 -7.8201 4.4981 48 1 -1.0930 -7.7247 2.1912 49 1 -0.7773 -6.3390 1.1195 50 1 -2.6515 -5.9503 2.5487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427650872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:37 Heat of formation + Delta-G solvation = -31.665200 kcal Electronic energy + Delta-G solvation = -29327.468962 eV Core-core repulsion = 25355.475216 eV Total energy + Delta-G solvation = -3971.993746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.65905 -40.28984 -37.92619 -36.37361 -34.37231 -33.37200 -32.46899 -31.90817 -30.73757 -29.94508 -28.93685 -26.76728 -25.85691 -25.58403 -24.10058 -22.71982 -22.08230 -21.02360 -19.01888 -18.77232 -18.61224 -17.93131 -16.93699 -16.68109 -16.56603 -15.62292 -15.33056 -15.06107 -14.74151 -14.44344 -14.22734 -13.80588 -13.60089 -13.59587 -13.29037 -13.04013 -12.94721 -12.82948 -12.51348 -12.39362 -12.34574 -12.17385 -12.06691 -11.76615 -11.66211 -11.49291 -11.30908 -11.22658 -11.16938 -11.06303 -10.95167 -10.78946 -10.68249 -10.36803 -10.24609 -9.75440 -9.68769 -9.56258 -8.78689 -8.64167 -8.15733 -7.44731 -6.25827 -4.33031 2.64574 2.74420 2.86495 3.21939 3.28036 3.32516 3.41802 3.63678 3.88168 4.22183 4.30198 4.32298 4.58134 4.77034 4.86082 4.97385 5.06926 5.07972 5.21403 5.23014 5.30635 5.33932 5.36975 5.44077 5.49278 5.52883 5.58406 5.63634 5.68801 5.78820 5.85088 5.94603 5.97347 6.01575 6.05040 6.08530 6.19837 6.26794 6.39137 6.48757 6.57785 6.88299 7.04404 7.13747 7.30789 7.42042 7.54038 7.67211 7.89301 8.07708 8.16146 8.68577 8.76996 9.33397 10.81768 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.002328 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.522512 B =12022.975692 C =12357.252845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.268 4.268 17 C -0.010 4.010 18 C -0.127 4.127 19 C 0.532 3.468 20 O -0.543 6.543 21 N -0.613 5.613 22 C 0.102 3.898 23 C -0.133 4.133 24 C -0.126 4.126 25 C 0.138 3.862 26 H 0.085 0.915 27 C 0.062 3.938 28 O -0.567 6.567 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 -20.534 11.709 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.280 4.280 17 C -0.049 4.049 18 C -0.167 4.167 19 C 0.322 3.678 20 O -0.420 6.420 21 N -0.348 5.348 22 C -0.021 4.021 23 C -0.171 4.171 24 C -0.164 4.164 25 C 0.034 3.966 26 H 0.103 0.897 27 C -0.017 4.017 28 O -0.372 6.372 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.271 -19.112 11.457 25.439 hybrid contribution -0.039 -0.608 -1.208 1.353 sum -12.310 -19.721 10.249 25.406 Atomic orbital electron populations 1.20022 0.88071 1.02372 1.01810 1.21941 0.96106 0.90771 1.02535 1.77270 0.87492 1.22656 1.24709 1.49239 1.05772 1.04194 1.51271 1.19647 0.77989 0.89533 0.98897 1.21309 1.13012 1.31652 0.91346 0.91813 1.24926 0.95692 0.95024 0.98149 1.69917 1.18982 1.32967 1.31171 0.86358 0.77601 0.78993 0.83769 1.20302 1.20868 1.19657 1.20770 0.96106 0.85673 1.01250 1.20343 0.93755 0.97126 1.03161 1.19350 0.91351 0.95087 1.22248 1.19391 1.01518 0.90864 0.93111 1.21721 1.02795 0.91045 1.01181 1.20732 0.76395 0.88980 0.81692 1.90665 1.52115 1.68423 1.30840 1.48545 1.67256 1.12867 1.06137 1.22314 1.01631 0.96322 0.81810 1.22760 1.00019 0.95122 0.99194 1.22635 1.01394 0.99278 0.93086 1.21639 0.93723 0.84413 0.96800 0.89687 1.22530 0.89064 0.94072 0.96021 1.86447 1.20978 1.71514 1.58293 0.91611 0.91591 0.91278 0.93089 0.93114 0.92271 0.90462 0.90949 0.91137 0.91456 0.91351 0.89093 0.89246 0.90393 0.90983 0.90660 0.89796 0.89297 0.90448 0.93201 0.91894 0.77639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.26 36.01 0.37 -0.57 16 2 C 0.05 0.99 7.22 -82.40 -0.59 0.39 16 3 N -0.30 -6.94 12.58 33.67 0.42 -6.51 16 4 N -0.33 -7.68 3.60 -58.31 -0.21 -7.89 16 5 C 0.26 6.65 6.00 -5.19 -0.03 6.62 16 6 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 10 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.09 1.89 6.93 -82.26 -0.57 1.32 16 15 C -0.09 -1.43 9.72 36.01 0.35 -1.08 16 16 C -0.27 -4.91 5.35 -105.05 -0.56 -5.47 16 17 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 18 C -0.13 -1.60 4.69 -27.88 -0.13 -1.73 16 19 C 0.53 6.94 7.63 -10.99 -0.08 6.85 16 20 O -0.54 -8.71 14.94 5.56 0.08 -8.62 16 21 N -0.61 -6.43 3.02 -163.01 -0.49 -6.93 16 22 C 0.10 0.83 6.69 -2.53 -0.02 0.81 16 23 C -0.13 -0.82 7.08 -24.58 -0.17 -0.99 16 24 C -0.13 -0.83 6.36 -24.90 -0.16 -0.99 16 25 C 0.14 1.24 3.26 -66.95 -0.22 1.02 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 27 C 0.06 0.54 6.70 37.16 0.25 0.79 16 28 O -0.57 -4.84 12.41 -35.23 -0.44 -5.28 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.90 7.25 -51.93 -0.38 0.52 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 1.30 7.05 -51.93 -0.37 0.93 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.23 7.08 -51.93 -0.37 0.86 16 37 H 0.07 0.96 7.77 -51.93 -0.40 0.56 16 38 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 39 H 0.07 1.04 7.20 -51.93 -0.37 0.66 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 42 H 0.08 0.59 7.48 -51.93 -0.39 0.20 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.63 6.95 -51.93 -0.36 0.27 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.70 6.71 -51.93 -0.35 0.35 16 50 H 0.38 1.78 9.12 45.56 0.42 2.19 16 LS Contribution 405.73 15.07 6.11 6.11 Total: -1.00 -33.92 405.73 -8.49 -42.42 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.57 Total: 1.74 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.12 Total: -6.83 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.46 Total: -45.88 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.35 Total: -13.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.92 -8.49 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.751 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds