Wall clock time and date at job start Tue Mar 31 2020 20:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00008 * 2 1 4 4 O 1.20822 * 119.99871 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99881 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47033 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47063 * 180.02562 * 6 5 3 8 8 N 1.40082 * 126.03910 * 90.02538 * 7 6 5 9 9 C 1.30836 * 108.20645 * 179.97438 * 8 7 6 10 10 C 1.50701 * 125.89844 * 179.97438 * 9 8 7 11 11 C 1.39866 * 108.20417 * 0.02562 * 9 8 7 12 12 C 1.50700 * 126.04220 * 179.97438 * 11 9 8 13 13 N 1.46898 * 109.46789 * 89.97254 * 12 11 9 14 14 C 1.46906 * 110.99795 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47262 * 185.35299 * 14 13 12 16 16 C 1.50699 * 115.54878 * 65.04321 * 15 14 13 17 17 H 1.07994 * 120.00484 * 265.44367 * 16 15 14 18 18 C 1.37880 * 119.99464 * 85.45324 * 16 15 14 19 19 N 1.31513 * 120.00401 * 353.59199 * 18 16 15 20 20 Si 1.86808 * 119.99633 * 173.59305 * 18 16 15 21 21 H 1.48496 * 109.47078 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46917 * 119.99789 * 20 18 16 23 23 H 1.48499 * 109.46976 * 239.99729 * 20 18 16 24 24 C 1.53005 * 117.49685 * 279.37723 * 15 14 13 25 25 C 1.53000 * 117.49819 * 210.71970 * 15 14 13 26 26 C 1.34955 * 126.03630 * 269.71965 * 7 6 5 27 27 C 1.50694 * 126.12666 * 359.97438 * 26 7 6 28 28 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47294 * 300.00638 * 1 2 3 30 30 H 1.09005 * 109.46746 * 60.00398 * 1 2 3 31 31 H 1.09003 * 109.47510 * 299.99940 * 5 3 2 32 32 H 1.09002 * 109.47195 * 59.99862 * 5 3 2 33 33 H 1.08990 * 109.47752 * 300.00158 * 6 5 3 34 34 H 1.09002 * 109.46576 * 60.00505 * 6 5 3 35 35 H 1.08994 * 109.46857 * 90.02981 * 10 9 8 36 36 H 1.08998 * 109.47240 * 210.03014 * 10 9 8 37 37 H 1.09007 * 109.47182 * 330.02970 * 10 9 8 38 38 H 1.08994 * 109.47336 * 209.97532 * 12 11 9 39 39 H 1.09001 * 109.46778 * 329.97325 * 12 11 9 40 40 H 1.00902 * 111.00409 * 303.95133 * 13 12 11 41 41 H 1.09004 * 109.47043 * 305.35143 * 14 13 12 42 42 H 1.08999 * 109.47016 * 65.35033 * 14 13 12 43 43 H 0.96998 * 120.00143 * 180.02562 * 19 18 16 44 44 H 1.09001 * 117.49562 * 359.97438 * 24 15 14 45 45 H 1.08998 * 117.49663 * 145.01376 * 24 15 14 46 46 H 1.08997 * 117.49495 * 214.97457 * 25 15 14 47 47 H 1.09000 * 117.49798 * 359.97343 * 25 15 14 48 48 H 1.09002 * 109.47438 * 90.02289 * 27 26 7 49 49 H 1.09003 * 109.47397 * 210.02937 * 27 26 7 50 50 H 1.09005 * 109.47248 * 330.02503 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 -0.0002 8 7 6.2862 2.8617 -1.1330 9 6 7.5300 2.9274 -0.7324 10 6 8.7433 2.9906 -1.6239 11 6 7.5391 2.9278 0.6663 12 6 8.7617 2.9918 1.5450 13 7 9.0867 4.3958 1.8300 14 6 10.2765 4.4974 2.6858 15 6 10.5052 5.9607 3.0697 16 6 9.4341 6.5824 3.9284 17 1 8.6317 7.1416 3.4704 18 6 9.4788 6.4375 5.2988 19 7 10.3811 5.6541 5.8482 20 14 8.2576 7.3538 6.3752 21 1 7.3536 8.1635 5.5194 22 1 7.4569 6.3775 7.1570 23 1 8.9917 8.2492 7.3049 24 6 11.1992 6.8598 2.0445 25 6 11.9482 6.4128 3.3024 26 6 6.2558 2.8661 1.0910 27 6 5.7944 2.8503 2.5255 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9558 0.7809 0.8908 32 1 3.9564 0.7805 -0.8891 33 1 3.6109 3.2356 -0.8905 34 1 3.6101 3.2366 0.8894 35 1 8.9821 4.0320 -1.8392 36 1 9.5885 2.5205 -1.1212 37 1 8.5369 2.4649 -2.5563 38 1 8.5650 2.4673 2.4800 39 1 9.6015 2.5210 1.0339 40 1 9.2102 4.9190 0.9761 41 1 10.1268 3.9042 3.5880 42 1 11.1459 4.1234 2.1452 43 1 10.4123 5.5519 6.8122 44 1 11.4932 6.4086 1.0968 45 1 10.8813 7.9010 1.9914 46 1 12.1228 7.1602 4.0763 47 1 12.7346 5.6676 3.1824 48 1 5.7370 1.8202 2.8774 49 1 6.5022 3.4056 3.1410 50 1 4.8103 3.3136 2.5958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430779060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:29 Heat of formation + Delta-G solvation = 8.840426 kcal Electronic energy + Delta-G solvation = -28868.306552 eV Core-core repulsion = 24898.069262 eV Total energy + Delta-G solvation = -3970.237290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35648 -40.80884 -37.13575 -36.95196 -35.26322 -34.15474 -32.41824 -31.78330 -31.01665 -28.83100 -27.99164 -27.20129 -25.79350 -25.06853 -23.86437 -22.54165 -21.20121 -20.94934 -19.49983 -19.32741 -18.84394 -18.10742 -17.12585 -17.07926 -16.21154 -15.90205 -15.30997 -15.02807 -14.80546 -14.40701 -13.98110 -13.83194 -13.66893 -13.52507 -13.32849 -13.27699 -13.15174 -12.97929 -12.82608 -12.55648 -12.45831 -12.21004 -11.93720 -11.77897 -11.61032 -11.40487 -11.29500 -11.24801 -11.12466 -10.98716 -10.91275 -10.58857 -10.39076 -10.22092 -10.10276 -9.39496 -8.94451 -8.72390 -8.32068 -8.19800 -7.92938 -7.37753 -5.90477 -3.90910 1.73432 1.86523 2.11621 2.71369 2.89788 3.35162 3.43570 3.48941 4.17423 4.32310 4.47975 4.51776 4.67432 4.73740 4.78725 4.81138 4.92133 5.09930 5.12239 5.14192 5.26500 5.36999 5.39844 5.46319 5.56674 5.61315 5.68559 5.68793 5.70476 5.91041 5.96462 6.10661 6.18822 6.21953 6.30306 6.42790 6.50957 6.59070 6.72123 6.81241 6.86273 6.97411 7.14006 7.18813 7.26596 7.54362 7.67233 7.88134 8.02928 8.08649 8.29662 8.63791 9.08456 9.71547 11.19466 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.002674 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.596487 B =10469.975267 C =12126.707040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.505 6.505 5 C -0.132 4.132 6 C 0.151 3.849 7 N -0.380 5.380 8 N -0.305 5.305 9 C 0.084 3.916 10 C -0.073 4.073 11 C -0.220 4.220 12 C 0.138 3.862 13 N -0.663 5.663 14 C 0.108 3.892 15 C 0.053 3.947 16 C -0.464 4.464 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.885 3.115 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.287 1.287 24 C -0.216 4.216 25 C -0.159 4.159 26 C 0.108 3.892 27 C -0.098 4.098 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.023 0.977 40 H 0.329 0.671 41 H 0.075 0.925 42 H -0.007 1.007 43 H 0.255 0.745 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 -13.255 -11.918 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.312 3.688 4 O -0.393 6.393 5 C -0.171 4.171 6 C 0.028 3.972 7 N -0.162 5.162 8 N -0.126 5.126 9 C -0.083 4.083 10 C -0.132 4.132 11 C -0.231 4.231 12 C 0.008 3.992 13 N -0.293 5.293 14 C -0.021 4.021 15 C 0.053 3.947 16 C -0.502 4.502 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.714 3.286 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.214 1.214 24 C -0.253 4.253 25 C -0.198 4.198 26 C -0.018 4.018 27 C -0.156 4.156 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.011 0.989 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.123 0.877 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.452 -13.034 -12.199 22.969 hybrid contribution 0.314 0.303 0.749 0.867 sum -14.139 -12.731 -11.450 22.206 Atomic orbital electron populations 1.23313 0.75866 1.03901 1.02778 1.86507 1.23799 1.33203 1.83986 1.23440 0.91589 0.81518 0.72265 1.90714 1.67231 1.36198 1.45133 1.21781 0.88061 0.99977 1.07276 1.21233 0.75423 0.94457 1.06050 1.48208 1.05307 1.59001 1.03703 1.77242 1.01096 1.26766 1.07524 1.22189 0.93397 0.98914 0.93769 1.20171 0.92388 1.03019 0.97572 1.19705 0.94394 1.16139 0.92888 1.20109 0.91460 0.91356 0.96316 1.60326 1.40153 1.08509 1.20331 1.21541 0.87157 0.98301 0.95115 1.18831 0.91549 0.89574 0.94783 1.20339 1.08270 1.31715 0.89881 0.92320 1.24924 0.95495 0.95141 0.97929 1.70018 1.34997 1.37037 1.10387 0.86650 0.81474 0.79882 0.80637 1.19845 1.21274 1.21362 1.22983 1.09354 1.00460 0.92527 1.22516 0.96656 1.02860 0.97735 1.20869 0.90582 0.99869 0.90455 1.20558 1.02700 1.02986 0.89364 0.87919 0.91648 0.91730 0.86864 0.86612 0.87958 0.87967 0.90442 0.90560 0.91250 0.91023 0.95857 0.85375 0.90637 0.98905 0.93479 0.92208 0.90657 0.90179 0.92199 0.90715 0.87709 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.03 10.57 -39.25 -0.41 -3.44 16 3 C 0.47 4.38 7.96 36.01 0.29 4.67 16 4 O -0.51 -5.99 15.73 -18.75 -0.29 -6.29 16 5 C -0.13 -1.09 6.13 -27.88 -0.17 -1.26 16 6 C 0.15 1.57 5.54 -4.04 -0.02 1.55 16 7 N -0.38 -5.10 3.61 -57.14 -0.21 -5.31 16 8 N -0.30 -4.59 12.58 33.67 0.42 -4.17 16 9 C 0.08 1.23 7.22 -82.41 -0.59 0.63 16 10 C -0.07 -0.84 10.26 36.01 0.37 -0.47 16 11 C -0.22 -3.37 5.61 -105.05 -0.59 -3.96 16 12 C 0.14 2.22 5.58 -4.98 -0.03 2.19 16 13 N -0.66 -12.70 6.37 -115.05 -0.73 -13.44 16 14 C 0.11 2.34 5.51 -3.82 -0.02 2.31 16 15 C 0.05 1.29 1.55 -155.66 -0.24 1.05 16 16 C -0.46 -12.52 8.74 -34.44 -0.30 -12.82 16 17 H 0.06 1.64 7.82 -52.49 -0.41 1.22 16 18 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 19 N -0.89 -24.87 12.92 55.43 0.72 -24.15 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.22 -4.69 9.96 -26.69 -0.27 -4.95 16 25 C -0.16 -3.74 9.41 -26.69 -0.25 -3.99 16 26 C 0.11 1.55 6.93 -82.26 -0.57 0.98 16 27 C -0.10 -1.21 9.72 36.00 0.35 -0.86 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.10 1.00 7.00 -51.93 -0.36 0.64 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.81 7.25 -51.93 -0.38 0.44 16 37 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.07 1.17 7.79 -51.93 -0.40 0.77 16 39 H 0.02 0.35 7.26 -51.93 -0.38 -0.02 16 40 H 0.33 6.17 8.78 -39.29 -0.34 5.83 16 41 H 0.08 1.83 8.13 -51.93 -0.42 1.40 16 42 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 43 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 46 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.10 1.56 7.79 -51.93 -0.40 1.16 16 50 H 0.07 0.72 7.08 -51.93 -0.37 0.35 16 LS Contribution 419.77 15.07 6.33 6.33 Total: -1.00 -31.81 419.77 -8.80 -40.61 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.52 Total: 5.56 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.08 Total: -11.95 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.20 Total: -47.07 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.71 Total: -9.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.81 -8.80 -40.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430779060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.455 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds