Wall clock time and date at job start Tue Mar 31 2020 20:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00008 * 2 1 4 4 O 1.20822 * 119.99871 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99881 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47033 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47063 * 180.02562 * 6 5 3 8 8 N 1.40082 * 126.03910 * 90.02538 * 7 6 5 9 9 C 1.30836 * 108.20645 * 179.97438 * 8 7 6 10 10 C 1.50701 * 125.89844 * 179.97438 * 9 8 7 11 11 C 1.39866 * 108.20417 * 0.02562 * 9 8 7 12 12 C 1.50700 * 126.04220 * 179.97438 * 11 9 8 13 13 N 1.46898 * 109.46789 * 89.97254 * 12 11 9 14 14 C 1.46906 * 110.99795 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47262 * 185.35299 * 14 13 12 16 16 C 1.50699 * 115.54878 * 65.04321 * 15 14 13 17 17 H 1.07994 * 120.00484 * 265.44367 * 16 15 14 18 18 C 1.37880 * 119.99464 * 85.45324 * 16 15 14 19 19 N 1.31513 * 120.00401 * 353.59199 * 18 16 15 20 20 Si 1.86808 * 119.99633 * 173.59305 * 18 16 15 21 21 H 1.48496 * 109.47078 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46917 * 119.99789 * 20 18 16 23 23 H 1.48499 * 109.46976 * 239.99729 * 20 18 16 24 24 C 1.53005 * 117.49685 * 279.37723 * 15 14 13 25 25 C 1.53000 * 117.49819 * 210.71970 * 15 14 13 26 26 C 1.34955 * 126.03630 * 269.71965 * 7 6 5 27 27 C 1.50694 * 126.12666 * 359.97438 * 26 7 6 28 28 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47294 * 300.00638 * 1 2 3 30 30 H 1.09005 * 109.46746 * 60.00398 * 1 2 3 31 31 H 1.09003 * 109.47510 * 299.99940 * 5 3 2 32 32 H 1.09002 * 109.47195 * 59.99862 * 5 3 2 33 33 H 1.08990 * 109.47752 * 300.00158 * 6 5 3 34 34 H 1.09002 * 109.46576 * 60.00505 * 6 5 3 35 35 H 1.08994 * 109.46857 * 90.02981 * 10 9 8 36 36 H 1.08998 * 109.47240 * 210.03014 * 10 9 8 37 37 H 1.09007 * 109.47182 * 330.02970 * 10 9 8 38 38 H 1.08994 * 109.47336 * 209.97532 * 12 11 9 39 39 H 1.09001 * 109.46778 * 329.97325 * 12 11 9 40 40 H 1.00902 * 111.00409 * 303.95133 * 13 12 11 41 41 H 1.09004 * 109.47043 * 305.35143 * 14 13 12 42 42 H 1.08999 * 109.47016 * 65.35033 * 14 13 12 43 43 H 0.96998 * 120.00143 * 180.02562 * 19 18 16 44 44 H 1.09001 * 117.49562 * 359.97438 * 24 15 14 45 45 H 1.08998 * 117.49663 * 145.01376 * 24 15 14 46 46 H 1.08997 * 117.49495 * 214.97457 * 25 15 14 47 47 H 1.09000 * 117.49798 * 359.97343 * 25 15 14 48 48 H 1.09002 * 109.47438 * 90.02289 * 27 26 7 49 49 H 1.09003 * 109.47397 * 210.02937 * 27 26 7 50 50 H 1.09005 * 109.47248 * 330.02503 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 -0.0002 8 7 6.2862 2.8617 -1.1330 9 6 7.5300 2.9274 -0.7324 10 6 8.7433 2.9906 -1.6239 11 6 7.5391 2.9278 0.6663 12 6 8.7617 2.9918 1.5450 13 7 9.0867 4.3958 1.8300 14 6 10.2765 4.4974 2.6858 15 6 10.5052 5.9607 3.0697 16 6 9.4341 6.5824 3.9284 17 1 8.6317 7.1416 3.4704 18 6 9.4788 6.4375 5.2988 19 7 10.3811 5.6541 5.8482 20 14 8.2576 7.3538 6.3752 21 1 7.3536 8.1635 5.5194 22 1 7.4569 6.3775 7.1570 23 1 8.9917 8.2492 7.3049 24 6 11.1992 6.8598 2.0445 25 6 11.9482 6.4128 3.3024 26 6 6.2558 2.8661 1.0910 27 6 5.7944 2.8503 2.5255 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9558 0.7809 0.8908 32 1 3.9564 0.7805 -0.8891 33 1 3.6109 3.2356 -0.8905 34 1 3.6101 3.2366 0.8894 35 1 8.9821 4.0320 -1.8392 36 1 9.5885 2.5205 -1.1212 37 1 8.5369 2.4649 -2.5563 38 1 8.5650 2.4673 2.4800 39 1 9.6015 2.5210 1.0339 40 1 9.2102 4.9190 0.9761 41 1 10.1268 3.9042 3.5880 42 1 11.1459 4.1234 2.1452 43 1 10.4123 5.5519 6.8122 44 1 11.4932 6.4086 1.0968 45 1 10.8813 7.9010 1.9914 46 1 12.1228 7.1602 4.0763 47 1 12.7346 5.6676 3.1824 48 1 5.7370 1.8202 2.8774 49 1 6.5022 3.4056 3.1410 50 1 4.8103 3.3136 2.5958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430779060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:28 Heat of formation + Delta-G solvation = -9.446756 kcal Electronic energy + Delta-G solvation = -28869.099543 eV Core-core repulsion = 24898.069262 eV Total energy + Delta-G solvation = -3971.030282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.38768 -41.56337 -38.74156 -37.81368 -36.42444 -35.41089 -33.85258 -33.38517 -32.09459 -29.60158 -29.10048 -27.99152 -27.56688 -26.55601 -24.98538 -23.86543 -22.75973 -21.92277 -20.91323 -20.46880 -20.30194 -18.86996 -18.01829 -17.84696 -17.76012 -16.95451 -16.70589 -16.32081 -16.25587 -15.63360 -15.34813 -15.09530 -14.88497 -14.69732 -14.48915 -14.27472 -14.13840 -13.99491 -13.84911 -13.75468 -13.42230 -13.15112 -13.02350 -12.99178 -12.86448 -12.81584 -12.67394 -12.59621 -12.46412 -12.37317 -12.26520 -11.95875 -11.86771 -11.75307 -11.38086 -11.23195 -10.67231 -10.31986 -9.98505 -9.88010 -9.27136 -8.85669 -7.98543 -6.03494 0.85946 1.01590 1.25748 1.42762 1.46390 1.56501 1.76884 1.92226 2.51352 3.31444 3.43449 3.46091 3.51895 3.73022 3.84524 3.86903 3.92571 4.15207 4.22197 4.26982 4.30319 4.34135 4.45814 4.49348 4.50214 4.61145 4.64965 4.67473 4.69468 4.73111 4.78910 4.83027 4.87058 4.94781 5.05364 5.06867 5.14767 5.16443 5.22885 5.26536 5.34574 5.40813 5.69814 5.79661 5.82759 5.95295 6.11855 6.48559 6.56328 6.60686 6.79487 6.86356 6.99539 7.60923 9.10568 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.002674 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.596487 B =10469.975267 C =12126.707040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.535 6.535 5 C -0.121 4.121 6 C 0.147 3.853 7 N -0.376 5.376 8 N -0.325 5.325 9 C 0.078 3.922 10 C -0.072 4.072 11 C -0.243 4.243 12 C 0.147 3.853 13 N -0.672 5.672 14 C 0.124 3.876 15 C 0.027 3.973 16 C -0.473 4.473 17 H 0.043 0.957 18 C 0.024 3.976 19 N -0.910 5.910 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.286 1.286 24 C -0.190 4.190 25 C -0.166 4.166 26 C 0.106 3.894 27 C -0.094 4.094 28 H 0.131 0.869 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.333 0.667 41 H 0.044 0.956 42 H 0.007 0.993 43 H 0.255 0.745 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.076 0.924 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 -14.245 -12.831 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.159 4.159 6 C 0.025 3.975 7 N -0.158 5.158 8 N -0.147 5.147 9 C -0.088 4.088 10 C -0.130 4.130 11 C -0.254 4.254 12 C 0.017 3.983 13 N -0.302 5.302 14 C -0.005 4.005 15 C 0.026 3.974 16 C -0.512 4.512 17 H 0.061 0.939 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.212 1.212 24 C -0.228 4.228 25 C -0.204 4.204 26 C -0.021 4.021 27 C -0.152 4.152 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.150 0.850 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.095 0.905 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.254 -14.039 -13.132 24.540 hybrid contribution 0.479 0.596 1.001 1.259 sum -14.775 -13.443 -12.131 23.371 Atomic orbital electron populations 1.23584 0.74423 1.05822 1.02702 1.86499 1.25252 1.32531 1.83547 1.23537 0.91822 0.81359 0.71351 1.90706 1.67920 1.37150 1.46698 1.21655 0.87453 0.98481 1.08310 1.21388 0.73831 0.96115 1.06133 1.48381 1.06122 1.58240 1.03097 1.77207 1.01504 1.27613 1.08394 1.22605 0.94083 0.98238 0.93874 1.20258 0.91489 1.03533 0.97731 1.19711 0.94410 1.17998 0.93275 1.20000 0.92434 0.89493 0.96336 1.60227 1.38963 1.10651 1.20394 1.21176 0.88674 0.96113 0.94531 1.18959 0.91063 0.91263 0.96076 1.20506 1.08556 1.31523 0.90582 0.93904 1.25508 0.97041 0.95893 0.99032 1.70107 1.36320 1.38076 1.10454 0.85797 0.79655 0.78809 0.79056 1.19846 1.20792 1.21246 1.22964 1.06953 0.99932 0.92906 1.22433 0.96863 1.02821 0.98318 1.21147 0.90696 0.98979 0.91307 1.20549 1.02498 1.04264 0.87882 0.85060 0.91760 0.91835 0.85306 0.86009 0.88454 0.87386 0.90074 0.89710 0.90001 0.91845 0.94513 0.84977 0.93726 0.97454 0.93581 0.89238 0.91039 0.92665 0.90928 0.88259 0.90509 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.52 10.57 -51.37 -0.54 -6.06 16 3 C 0.48 8.25 7.96 71.24 0.57 8.82 16 4 O -0.53 -12.28 15.73 21.98 0.35 -11.94 16 5 C -0.12 -1.78 6.13 29.85 0.18 -1.60 16 6 C 0.15 2.88 5.54 86.38 0.48 3.36 16 7 N -0.38 -9.66 3.61 -334.70 -1.21 -10.87 16 8 N -0.33 -9.42 12.58 -47.39 -0.60 -10.02 16 9 C 0.08 2.19 7.22 43.10 0.31 2.50 16 10 C -0.07 -1.52 10.26 71.24 0.73 -0.79 16 11 C -0.24 -7.18 5.61 -20.14 -0.11 -7.30 16 12 C 0.15 4.62 5.58 85.56 0.48 5.10 16 13 N -0.67 -25.36 6.37 -517.92 -3.30 -28.65 16 14 C 0.12 5.35 5.51 86.30 0.48 5.83 16 15 C 0.03 1.30 1.55 -52.93 -0.08 1.22 16 16 C -0.47 -25.77 8.74 25.60 0.22 -25.55 16 17 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 18 C 0.02 1.32 5.39 84.66 0.46 1.78 16 19 N -0.91 -51.70 12.92 21.45 0.28 -51.42 16 20 Si 0.94 44.04 29.54 68.60 2.03 46.06 16 21 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 C -0.19 -7.99 9.96 30.62 0.30 -7.68 16 25 C -0.17 -7.74 9.41 30.62 0.29 -7.45 16 26 C 0.11 2.92 6.93 41.40 0.29 3.20 16 27 C -0.09 -2.22 9.72 71.23 0.69 -1.53 16 28 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.10 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.11 1.99 7.00 -2.39 -0.02 1.97 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.63 7.25 -2.39 -0.02 1.62 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 2.08 7.79 -2.39 -0.02 2.06 16 39 H 0.04 1.06 7.26 -2.39 -0.02 1.04 16 40 H 0.33 12.09 8.78 -89.69 -0.79 11.30 16 41 H 0.04 2.18 8.13 -2.38 -0.02 2.16 16 42 H 0.01 0.30 8.09 -2.39 -0.02 0.28 16 43 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 47 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 48 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.08 2.29 7.79 -2.39 -0.02 2.28 16 50 H 0.08 1.65 7.08 -2.38 -0.02 1.63 16 Total: -1.00 -67.94 419.77 3.62 -64.32 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.14 Total: 27.19 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 6.48 Total: -18.61 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -4.83 Total: -100.96 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.20 Total: -17.99 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.94 3.62 -64.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430779060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.870 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds