Wall clock time and date at job start Tue Mar 31 2020 20:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00109 * 2 1 4 4 C 1.53001 * 109.47238 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47096 * 64.99975 * 4 3 2 6 6 C 1.36986 * 120.00351 * 264.81061 * 5 4 3 7 7 H 1.08000 * 119.99618 * 125.07563 * 6 5 4 8 8 C 1.38973 * 119.99702 * 305.07612 * 6 5 4 9 9 N 1.31409 * 120.00157 * 4.61389 * 8 6 5 10 10 Si 1.86801 * 119.99670 * 184.60691 * 8 6 5 11 11 H 1.48500 * 109.47210 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46642 * 120.00222 * 10 8 6 13 13 H 1.48497 * 109.47531 * 239.99943 * 10 8 6 14 14 C 1.34780 * 120.00038 * 84.80565 * 5 4 3 15 15 O 1.21632 * 119.99532 * 3.34567 * 14 5 4 16 16 C 1.47358 * 120.00287 * 183.34002 * 14 5 4 17 17 C 1.41320 * 126.42004 * 352.57008 * 16 14 5 18 18 N 1.30451 * 108.02208 * 180.29871 * 17 16 14 19 19 N 1.39929 * 108.91577 * 359.74269 * 18 17 16 20 20 C 1.46501 * 125.75063 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47436 * 59.96680 * 20 19 18 22 22 C 1.52998 * 109.47153 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47153 * 60.00247 * 22 21 20 24 24 C 1.52998 * 109.47158 * 300.00041 * 23 22 21 25 25 C 1.52998 * 109.47122 * 59.99940 * 24 23 22 26 26 C 1.34288 * 108.49626 * 359.97438 * 19 18 17 27 27 C 1.50709 * 126.29355 * 180.02562 * 26 19 18 28 28 H 1.08997 * 109.47070 * 59.99637 * 1 2 3 29 29 H 1.08994 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46758 * 299.99649 * 1 2 3 31 31 H 1.09004 * 109.47133 * 59.99911 * 3 2 1 32 32 H 1.09000 * 109.47666 * 300.00198 * 3 2 1 33 33 H 1.08997 * 109.46946 * 305.00277 * 4 3 2 34 34 H 1.09002 * 109.47108 * 185.00179 * 4 3 2 35 35 H 0.96999 * 119.99888 * 179.97438 * 9 8 6 36 36 H 1.07989 * 125.98772 * 0.03102 * 17 16 14 37 37 H 1.09003 * 109.46982 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47465 * 300.00231 * 21 20 19 39 39 H 1.09000 * 109.47102 * 60.00017 * 21 20 19 40 40 H 1.08994 * 109.47270 * 300.00185 * 22 21 20 41 41 H 1.09007 * 109.47128 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47214 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47051 * 60.00149 * 23 22 21 44 44 H 1.09003 * 109.47228 * 300.00000 * 24 23 22 45 45 H 1.09000 * 109.47371 * 180.02562 * 24 23 22 46 46 H 1.09007 * 109.47128 * 180.02562 * 25 24 23 47 47 H 1.08994 * 109.47270 * 60.00125 * 25 24 23 48 48 H 1.09002 * 109.47013 * 90.00694 * 27 26 19 49 49 H 1.08997 * 109.47231 * 330.00057 * 27 26 19 50 50 H 1.09000 * 109.46748 * 209.99838 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2508 6 6 4.2003 -0.7865 -1.3041 7 1 3.6949 -1.3887 -2.0446 8 6 5.0775 -1.3815 -0.4053 9 7 5.6227 -0.6657 0.5525 10 14 5.4815 -3.1989 -0.5586 11 1 4.7434 -3.7745 -1.7115 12 1 6.9415 -3.3649 -0.7734 13 1 5.0813 -3.9018 0.6867 14 6 4.1626 1.3216 -2.3499 15 8 4.0231 2.5282 -2.2874 16 6 4.5350 0.6881 -3.6272 17 6 4.8742 -0.6698 -3.8228 18 7 5.1471 -0.8395 -5.0871 19 7 4.9923 0.3817 -5.7525 20 6 5.2051 0.6095 -7.1840 21 6 4.2548 -0.2793 -7.9887 22 6 4.4775 -0.0418 -9.4837 23 6 5.9244 -0.3843 -9.8444 24 6 6.8748 0.5045 -9.0397 25 6 6.6520 0.2670 -7.5448 26 6 4.6146 1.3094 -4.8580 27 6 4.3358 2.7626 -5.1437 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 6.2346 -1.0812 1.1800 36 1 4.9064 -1.4322 -3.0588 37 1 5.0098 1.6560 -7.4183 38 1 4.4501 -1.3258 -7.7544 39 1 3.2240 -0.0357 -7.7314 40 1 4.2825 1.0045 -9.7184 41 1 3.8008 -0.6755 -10.0570 42 1 6.0832 -0.2147 -10.9094 43 1 6.1194 -1.4308 -9.6098 44 1 6.6798 1.5509 -9.2744 45 1 7.9055 0.2608 -9.2970 46 1 7.3288 0.9006 -6.9714 47 1 6.8470 -0.7794 -7.3101 48 1 3.2826 2.8879 -5.3952 49 1 4.9511 3.0930 -5.9805 50 1 4.5719 3.3580 -4.2617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457204588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:41 Heat of formation + Delta-G solvation = -11.288242 kcal Electronic energy + Delta-G solvation = -30512.284404 eV Core-core repulsion = 26541.174270 eV Total energy + Delta-G solvation = -3971.110134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.80680 -38.59394 -37.91038 -36.76617 -34.64389 -32.87821 -31.60198 -31.32307 -30.96458 -29.59988 -28.10725 -26.57467 -25.75451 -24.73700 -23.19245 -22.76811 -22.12144 -20.98799 -19.94496 -19.07777 -18.78217 -17.07253 -16.27988 -15.70607 -15.56360 -15.20097 -15.02386 -14.85167 -14.48156 -14.30193 -14.19315 -14.12515 -13.95599 -13.32322 -13.07199 -12.90238 -12.75672 -12.54407 -12.45161 -12.40201 -12.00248 -11.87801 -11.66861 -11.45983 -11.31547 -11.30298 -11.14836 -10.97454 -10.92175 -10.78236 -10.58654 -10.50065 -10.36861 -10.28801 -10.01258 -9.89362 -8.95364 -8.81236 -8.59661 -8.37694 -7.72661 -7.14361 -6.23256 -4.09198 2.31545 2.92857 3.18987 3.26311 3.30817 3.32625 4.17462 4.41573 4.55354 4.56508 4.67970 4.71630 4.82848 4.99662 5.03698 5.06372 5.11691 5.24045 5.27971 5.31239 5.40628 5.52171 5.55021 5.70804 5.76773 5.78849 5.81517 5.86363 5.92200 5.99921 6.02621 6.03050 6.05058 6.11872 6.14861 6.19398 6.24227 6.42680 6.43606 6.47953 6.57007 6.74768 6.99547 7.37115 7.50237 7.56617 7.60384 7.93820 8.25087 8.42497 8.49595 9.17789 9.66045 10.08898 10.79547 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.003700 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.654707 B = 7566.157700 C = 8500.246548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.430 5.430 6 C -0.323 4.323 7 H 0.089 0.911 8 C 0.052 3.948 9 N -0.866 5.866 10 Si 0.903 3.097 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.559 3.441 15 O -0.613 6.613 16 C -0.247 4.247 17 C 0.089 3.911 18 N -0.326 5.326 19 N -0.371 5.371 20 C 0.167 3.833 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.127 4.127 26 C 0.117 3.883 27 C -0.090 4.090 28 H 0.030 0.970 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.268 0.732 36 H 0.217 0.783 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 1.987 -14.273 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.027 4.027 4 C -0.001 4.001 5 N -0.148 5.148 6 C -0.452 4.452 7 H 0.106 0.894 8 C -0.154 4.154 9 N -0.502 5.502 10 Si 0.729 3.271 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.205 1.205 14 C 0.349 3.651 15 O -0.501 6.501 16 C -0.261 4.261 17 C -0.096 4.096 18 N -0.145 5.145 19 N -0.151 5.151 20 C 0.064 3.936 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.165 4.165 26 C -0.013 4.013 27 C -0.149 4.149 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.877 1.544 -15.053 15.248 hybrid contribution -0.292 -0.220 0.798 0.878 sum -2.169 1.323 -14.255 14.480 Atomic orbital electron populations 1.22631 0.83593 1.01647 0.98725 1.88135 1.17214 1.27870 1.95016 1.23097 0.96952 0.84178 0.98432 1.21401 0.88572 0.98914 0.91194 1.42893 1.57800 1.06980 1.07104 1.19312 1.24035 0.82718 1.19131 0.89416 1.25565 0.95073 0.99212 0.95558 1.69771 1.28935 1.36394 1.15113 0.86253 0.78631 0.83376 0.78868 1.18761 1.20456 1.20496 1.17495 0.78462 0.85296 0.83803 1.90527 1.58635 1.14523 1.86381 1.20088 1.17983 0.94532 0.93532 1.25625 0.93549 0.97713 0.92731 1.77100 1.26972 1.02537 1.07923 1.48457 1.53086 1.06739 1.06834 1.21186 0.96250 1.00118 0.76015 1.21853 0.98974 1.01260 0.94296 1.21511 0.96855 1.01718 0.95259 1.21583 0.94710 1.00248 0.99435 1.21511 0.99659 1.00001 0.94181 1.21866 0.94882 1.03638 0.96099 1.21351 0.97864 0.92687 0.89428 1.20544 1.01426 0.89237 1.03644 0.95128 0.90491 0.95233 0.94472 0.94258 0.87387 0.91393 0.92172 0.76700 0.88791 0.90308 0.91578 0.91855 0.91475 0.91887 0.91645 0.91860 0.91454 0.91502 0.90288 0.90916 0.92488 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.82 10.42 -35.23 -0.37 -8.18 16 3 C 0.05 1.08 6.25 37.16 0.23 1.31 16 4 C 0.12 2.96 5.26 -4.04 -0.02 2.94 16 5 N -0.43 -11.01 2.41 -116.05 -0.28 -11.29 16 6 C -0.32 -8.24 6.09 -14.98 -0.09 -8.33 16 7 H 0.09 2.22 5.89 -52.49 -0.31 1.91 16 8 C 0.05 1.32 5.33 -17.46 -0.09 1.23 16 9 N -0.87 -23.08 11.47 55.50 0.64 -22.44 16 10 Si 0.90 19.74 29.01 -169.99 -4.93 14.81 16 11 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.56 14.18 7.59 -12.55 -0.10 14.09 16 15 O -0.61 -15.97 14.46 5.25 0.08 -15.90 16 16 C -0.25 -5.69 6.02 -105.07 -0.63 -6.32 16 17 C 0.09 2.00 10.24 -16.97 -0.17 1.82 16 18 N -0.33 -6.63 12.33 30.87 0.38 -6.25 16 19 N -0.37 -6.56 3.25 -50.14 -0.16 -6.72 16 20 C 0.17 2.18 2.89 -67.93 -0.20 1.98 16 21 C -0.13 -1.47 5.45 -26.74 -0.15 -1.62 16 22 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 23 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 24 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 25 C -0.13 -1.51 5.45 -26.73 -0.15 -1.66 16 26 C 0.12 2.28 7.01 -81.56 -0.57 1.71 16 27 C -0.09 -1.45 9.49 36.01 0.34 -1.10 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.11 2.79 6.08 -51.93 -0.32 2.47 16 34 H 0.07 1.65 7.54 -51.93 -0.39 1.26 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.22 4.95 4.21 -52.49 -0.22 4.73 16 37 H 0.09 1.07 6.63 -51.93 -0.34 0.73 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.06 0.72 7.07 -51.93 -0.37 0.36 16 50 H 0.11 1.96 6.36 -51.93 -0.33 1.63 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -30.46 392.89 -7.86 -38.32 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.18 Total: 7.54 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.96 Total: 4.19 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.57 Total: -46.70 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.29 Total: -24.08 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.93 Total: 14.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.46 -7.86 -38.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.028 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds