Wall clock time and date at job start Tue Mar 31 2020 20:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00109 * 2 1 4 4 C 1.53001 * 109.47238 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47096 * 64.99975 * 4 3 2 6 6 C 1.36986 * 120.00351 * 264.81061 * 5 4 3 7 7 H 1.08000 * 119.99618 * 125.07563 * 6 5 4 8 8 C 1.38973 * 119.99702 * 305.07612 * 6 5 4 9 9 N 1.31409 * 120.00157 * 4.61389 * 8 6 5 10 10 Si 1.86801 * 119.99670 * 184.60691 * 8 6 5 11 11 H 1.48500 * 109.47210 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46642 * 120.00222 * 10 8 6 13 13 H 1.48497 * 109.47531 * 239.99943 * 10 8 6 14 14 C 1.34780 * 120.00038 * 84.80565 * 5 4 3 15 15 O 1.21632 * 119.99532 * 3.34567 * 14 5 4 16 16 C 1.47358 * 120.00287 * 183.34002 * 14 5 4 17 17 C 1.41320 * 126.42004 * 352.57008 * 16 14 5 18 18 N 1.30451 * 108.02208 * 180.29871 * 17 16 14 19 19 N 1.39929 * 108.91577 * 359.74269 * 18 17 16 20 20 C 1.46501 * 125.75063 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47436 * 59.96680 * 20 19 18 22 22 C 1.52998 * 109.47153 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47153 * 60.00247 * 22 21 20 24 24 C 1.52998 * 109.47158 * 300.00041 * 23 22 21 25 25 C 1.52998 * 109.47122 * 59.99940 * 24 23 22 26 26 C 1.34288 * 108.49626 * 359.97438 * 19 18 17 27 27 C 1.50709 * 126.29355 * 180.02562 * 26 19 18 28 28 H 1.08997 * 109.47070 * 59.99637 * 1 2 3 29 29 H 1.08994 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46758 * 299.99649 * 1 2 3 31 31 H 1.09004 * 109.47133 * 59.99911 * 3 2 1 32 32 H 1.09000 * 109.47666 * 300.00198 * 3 2 1 33 33 H 1.08997 * 109.46946 * 305.00277 * 4 3 2 34 34 H 1.09002 * 109.47108 * 185.00179 * 4 3 2 35 35 H 0.96999 * 119.99888 * 179.97438 * 9 8 6 36 36 H 1.07989 * 125.98772 * 0.03102 * 17 16 14 37 37 H 1.09003 * 109.46982 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47465 * 300.00231 * 21 20 19 39 39 H 1.09000 * 109.47102 * 60.00017 * 21 20 19 40 40 H 1.08994 * 109.47270 * 300.00185 * 22 21 20 41 41 H 1.09007 * 109.47128 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47214 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.47051 * 60.00149 * 23 22 21 44 44 H 1.09003 * 109.47228 * 300.00000 * 24 23 22 45 45 H 1.09000 * 109.47371 * 180.02562 * 24 23 22 46 46 H 1.09007 * 109.47128 * 180.02562 * 25 24 23 47 47 H 1.08994 * 109.47270 * 60.00125 * 25 24 23 48 48 H 1.09002 * 109.47013 * 90.00694 * 27 26 19 49 49 H 1.08997 * 109.47231 * 330.00057 * 27 26 19 50 50 H 1.09000 * 109.46748 * 209.99838 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2508 6 6 4.2003 -0.7865 -1.3041 7 1 3.6949 -1.3887 -2.0446 8 6 5.0775 -1.3815 -0.4053 9 7 5.6227 -0.6657 0.5525 10 14 5.4815 -3.1989 -0.5586 11 1 4.7434 -3.7745 -1.7115 12 1 6.9415 -3.3649 -0.7734 13 1 5.0813 -3.9018 0.6867 14 6 4.1626 1.3216 -2.3499 15 8 4.0231 2.5282 -2.2874 16 6 4.5350 0.6881 -3.6272 17 6 4.8742 -0.6698 -3.8228 18 7 5.1471 -0.8395 -5.0871 19 7 4.9923 0.3817 -5.7525 20 6 5.2051 0.6095 -7.1840 21 6 4.2548 -0.2793 -7.9887 22 6 4.4775 -0.0418 -9.4837 23 6 5.9244 -0.3843 -9.8444 24 6 6.8748 0.5045 -9.0397 25 6 6.6520 0.2670 -7.5448 26 6 4.6146 1.3094 -4.8580 27 6 4.3358 2.7626 -5.1437 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 6.2346 -1.0812 1.1800 36 1 4.9064 -1.4322 -3.0588 37 1 5.0098 1.6560 -7.4183 38 1 4.4501 -1.3258 -7.7544 39 1 3.2240 -0.0357 -7.7314 40 1 4.2825 1.0045 -9.7184 41 1 3.8008 -0.6755 -10.0570 42 1 6.0832 -0.2147 -10.9094 43 1 6.1194 -1.4308 -9.6098 44 1 6.6798 1.5509 -9.2744 45 1 7.9055 0.2608 -9.2970 46 1 7.3288 0.9006 -6.9714 47 1 6.8470 -0.7794 -7.3101 48 1 3.2826 2.8879 -5.3952 49 1 4.9511 3.0930 -5.9805 50 1 4.5719 3.3580 -4.2617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457204588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:40 Heat of formation + Delta-G solvation = -28.905806 kcal Electronic energy + Delta-G solvation = -30513.048359 eV Core-core repulsion = 26541.174270 eV Total energy + Delta-G solvation = -3971.874089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.33942 -40.18729 -39.11605 -38.40239 -36.56024 -34.16881 -33.49453 -32.79767 -31.78336 -31.21252 -29.44443 -28.08465 -27.30078 -26.55400 -24.49544 -23.68553 -23.58482 -22.51291 -21.23560 -20.53099 -20.33062 -18.79234 -17.84657 -17.30527 -17.19328 -16.62753 -16.32958 -16.21821 -16.05756 -15.93337 -15.65221 -15.13285 -15.10852 -14.86615 -14.60167 -14.45565 -13.97826 -13.82771 -13.74317 -13.52674 -13.29841 -13.23780 -13.14845 -13.08225 -13.00327 -12.73195 -12.50955 -12.32844 -12.25951 -12.11398 -12.03854 -11.77301 -11.62048 -11.52319 -11.28348 -11.24190 -10.77192 -10.51597 -10.29063 -10.06893 -9.43145 -9.05254 -8.18282 -6.08951 0.74261 1.42222 1.46092 1.53092 1.57642 1.58311 2.33539 2.81933 2.98753 3.11826 3.20508 3.48409 3.68613 3.74901 3.90796 4.02202 4.18159 4.21295 4.23840 4.29805 4.32125 4.43261 4.47061 4.52062 4.56278 4.57326 4.60388 4.67372 4.69359 4.70731 4.81742 4.86285 4.89466 4.92805 5.03808 5.04402 5.15946 5.18592 5.19180 5.26955 5.32569 5.33764 5.41041 5.51179 5.57089 5.80168 6.18794 6.26167 6.46235 6.49874 6.82513 7.20484 7.72038 8.14308 8.84979 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.003700 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.654707 B = 7566.157700 C = 8500.246548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.123 3.877 5 N -0.443 5.443 6 C -0.323 4.323 7 H 0.086 0.914 8 C 0.012 3.988 9 N -0.898 5.898 10 Si 0.962 3.038 11 H -0.254 1.254 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.548 3.452 15 O -0.631 6.631 16 C -0.293 4.293 17 C 0.076 3.924 18 N -0.331 5.331 19 N -0.355 5.355 20 C 0.153 3.847 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.123 4.123 26 C 0.130 3.870 27 C -0.086 4.086 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.269 0.731 36 H 0.204 0.796 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 2.300 -17.249 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.013 4.013 4 C -0.001 4.001 5 N -0.160 5.160 6 C -0.451 4.451 7 H 0.103 0.897 8 C -0.191 4.191 9 N -0.536 5.536 10 Si 0.785 3.215 11 H -0.177 1.177 12 H -0.206 1.206 13 H -0.202 1.202 14 C 0.340 3.660 15 O -0.520 6.520 16 C -0.307 4.307 17 C -0.109 4.109 18 N -0.151 5.151 19 N -0.135 5.135 20 C 0.053 3.947 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.159 4.159 24 C -0.146 4.146 25 C -0.161 4.161 26 C -0.003 4.003 27 C -0.144 4.144 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.220 0.780 37 H 0.140 0.860 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.116 0.884 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.461 1.836 -18.057 18.316 hybrid contribution -0.140 -0.272 1.618 1.647 sum -2.601 1.564 -16.439 16.716 Atomic orbital electron populations 1.22871 0.80763 1.03269 1.00140 1.88066 1.20356 1.27928 1.95290 1.22851 0.94709 0.84489 0.99285 1.21316 0.90978 0.97557 0.90242 1.43097 1.58143 1.07216 1.07561 1.19398 1.23990 0.82810 1.18918 0.89702 1.26235 0.94820 1.02884 0.95113 1.69888 1.29748 1.38003 1.15926 0.85349 0.78189 0.78888 0.79032 1.17735 1.20551 1.20225 1.17909 0.78206 0.85308 0.84622 1.90485 1.59628 1.15046 1.86875 1.20125 1.21252 0.95327 0.94025 1.25342 0.94775 0.97437 0.93332 1.77019 1.26850 1.04074 1.07178 1.48866 1.50865 1.05409 1.08356 1.21782 0.97509 1.02152 0.73259 1.21820 0.98069 0.99512 0.96523 1.21505 0.97431 1.03173 0.92514 1.21594 0.94142 0.99489 1.00648 1.21504 1.00471 1.01296 0.91368 1.21840 0.93691 1.01957 0.98641 1.21799 0.95715 0.94230 0.88572 1.20607 1.03352 0.86297 1.04118 0.94482 0.88859 0.92920 0.91570 0.95171 0.89391 0.92625 0.92166 0.78034 0.85973 0.92534 0.92218 0.89964 0.90419 0.89605 0.92747 0.89964 0.90548 0.92462 0.92556 0.89100 0.88403 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.11 10.42 -148.98 -1.55 -18.67 16 3 C 0.06 2.74 6.25 71.98 0.45 3.19 16 4 C 0.12 6.16 5.26 86.38 0.45 6.62 16 5 N -0.44 -23.60 2.41 -639.31 -1.54 -25.14 16 6 C -0.32 -17.05 6.09 84.06 0.51 -16.53 16 7 H 0.09 4.47 5.89 -2.91 -0.02 4.45 16 8 C 0.01 0.64 5.33 84.93 0.45 1.09 16 9 N -0.90 -49.61 11.47 21.67 0.25 -49.36 16 10 Si 0.96 41.51 29.01 68.60 1.99 43.50 16 11 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.55 28.85 7.59 86.64 0.66 29.51 16 15 O -0.63 -33.97 14.46 -4.13 -0.06 -34.03 16 16 C -0.29 -13.83 6.02 -20.15 -0.12 -13.95 16 17 C 0.08 3.51 10.24 85.66 0.88 4.39 16 18 N -0.33 -13.61 12.33 -56.26 -0.69 -14.31 16 19 N -0.35 -12.24 3.25 -312.54 -1.02 -13.26 16 20 C 0.15 3.64 2.89 44.99 0.13 3.77 16 21 C -0.12 -2.58 5.45 30.59 0.17 -2.41 16 22 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 23 C -0.12 -1.57 5.92 30.59 0.18 -1.38 16 24 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 25 C -0.12 -2.71 5.45 30.60 0.17 -2.54 16 26 C 0.13 4.99 7.01 42.15 0.30 5.28 16 27 C -0.09 -2.58 9.49 71.24 0.68 -1.90 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 4.76 6.08 -2.39 -0.01 4.74 16 34 H 0.06 2.84 7.54 -2.39 -0.02 2.83 16 35 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.20 9.69 4.21 -2.92 -0.01 9.67 16 37 H 0.12 2.27 6.63 -2.39 -0.02 2.25 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.10 2.11 7.07 -2.39 -0.02 2.09 16 50 H 0.08 3.00 6.36 -2.39 -0.02 2.98 16 Total: -1.00 -69.52 392.89 4.82 -64.70 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.93 Total: 32.03 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.51 Total: 14.53 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -3.00 Total: -102.07 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.61 Total: -52.69 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.99 Total: 43.50 kcal Total: -69.52 4.82 -64.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457204588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.792 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds