Wall clock time and date at job start Tue Mar 31 2020 19:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32217 * 120.51538 * 2 1 4 4 C 1.31907 * 121.14405 * 179.97438 * 3 2 1 5 5 C 1.50703 * 118.90064 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46842 * 59.99745 * 5 4 3 7 7 C 1.52999 * 109.46896 * 179.97438 * 5 4 3 8 8 C 1.52996 * 109.47126 * 299.99994 * 5 4 3 9 9 N 1.31748 * 122.19472 * 0.02562 * 4 3 2 10 10 C 1.32746 * 120.87293 * 359.65837 * 9 4 3 11 11 O 1.35284 * 120.61489 * 180.31060 * 10 9 4 12 12 C 1.39773 * 120.50663 * 179.97438 * 2 1 3 13 13 C 1.47537 * 120.97861 * 0.02562 * 12 2 1 14 14 O 1.21593 * 119.99856 * 90.00188 * 13 12 2 15 15 N 1.34777 * 120.00133 * 269.72740 * 13 12 2 16 16 C 1.46504 * 119.99854 * 180.27865 * 15 13 12 17 17 C 1.53004 * 109.46928 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46866 * 299.99525 * 17 16 15 19 19 C 1.52994 * 109.47172 * 59.99462 * 17 16 15 20 20 C 1.50699 * 109.46843 * 180.02562 * 17 16 15 21 21 H 1.08001 * 119.99981 * 359.97438 * 20 17 16 22 22 C 1.37876 * 119.99570 * 179.97438 * 20 17 16 23 23 N 1.31514 * 120.00351 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 119.99771 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.46867 * 90.00067 * 24 22 20 26 26 H 1.48501 * 109.47216 * 209.99924 * 24 22 20 27 27 H 1.48499 * 109.47135 * 330.00265 * 24 22 20 28 28 H 1.09000 * 109.46843 * 270.02530 * 1 2 3 29 29 H 1.09000 * 109.46397 * 30.02480 * 1 2 3 30 30 H 1.08998 * 109.47127 * 150.02323 * 1 2 3 31 31 H 1.09000 * 109.46846 * 60.00297 * 6 5 4 32 32 H 1.09007 * 109.46949 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47609 * 299.99719 * 6 5 4 34 34 H 1.08995 * 109.47110 * 60.00100 * 7 5 4 35 35 H 1.09007 * 109.46409 * 180.02562 * 7 5 4 36 36 H 1.08996 * 109.47020 * 299.99942 * 7 5 4 37 37 H 1.09003 * 109.47149 * 59.99567 * 8 5 4 38 38 H 1.09002 * 109.47642 * 179.97438 * 8 5 4 39 39 H 1.09004 * 109.47311 * 300.00299 * 8 5 4 40 40 H 0.96695 * 113.99699 * 270.30362 * 11 10 9 41 41 H 0.97000 * 119.99736 * 0.27139 * 15 13 12 42 42 H 1.08998 * 109.46968 * 299.99782 * 16 15 13 43 43 H 1.08997 * 109.47198 * 59.99605 * 16 15 13 44 44 H 1.09007 * 109.47177 * 60.00009 * 18 17 16 45 45 H 1.08994 * 109.47297 * 180.02562 * 18 17 16 46 46 H 1.08997 * 109.47361 * 300.00353 * 18 17 16 47 47 H 1.09006 * 109.47135 * 60.00046 * 19 17 16 48 48 H 1.09001 * 109.47144 * 179.97438 * 19 17 16 49 49 H 1.08998 * 109.47717 * 300.00195 * 19 17 16 50 50 H 0.96996 * 120.00389 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1390 0.0000 4 6 3.4974 1.1535 0.0005 5 6 4.2112 2.4808 -0.0001 6 6 3.8170 3.2724 1.2485 7 6 5.7232 2.2466 0.0013 8 6 3.8180 3.2707 -1.2500 9 7 4.2115 0.0464 0.0005 10 6 3.6233 -1.1436 0.0068 11 8 4.3617 -2.2771 0.0131 12 6 2.2166 -1.2042 0.0005 13 6 1.5122 -2.5006 0.0006 14 8 1.2225 -3.0351 -1.0525 15 7 1.1950 -3.0952 1.1677 16 6 0.5010 -4.3854 1.1677 17 6 0.2624 -4.8362 2.6102 18 6 1.6057 -4.9797 3.3284 19 6 -0.5946 -3.7961 3.3344 20 6 -0.4509 -6.1637 2.6101 21 1 -0.7086 -6.6382 1.6747 22 6 -0.7744 -6.7725 3.8041 23 7 -0.4601 -6.1949 4.9431 24 14 -1.6592 -8.4177 3.8041 25 1 -0.6606 -9.5167 3.8001 26 1 -2.5072 -8.5238 5.0185 27 1 -2.5132 -8.5204 2.5935 28 1 -0.3633 0.0005 1.0277 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.0971 2.7096 2.1389 32 1 4.3336 4.2322 1.2483 33 1 2.7398 3.4392 1.2479 34 1 6.0043 1.6825 -0.8879 35 1 6.2394 3.2067 0.0013 36 1 6.0028 1.6841 0.8920 37 1 2.7408 3.4374 -1.2506 38 1 4.3339 4.2309 -1.2503 39 1 4.0988 2.7067 -2.1395 40 1 4.5805 -2.6089 -0.8684 41 1 1.4262 -2.6688 2.0078 42 1 -0.4557 -4.2833 0.6555 43 1 1.1118 -5.1265 0.6521 44 1 2.1221 -4.0197 3.3284 45 1 1.4358 -5.3013 4.3559 46 1 2.2163 -5.7206 2.8125 47 1 -1.5517 -3.6939 2.8226 48 1 -0.7650 -4.1175 4.3619 49 1 -0.0784 -2.8362 3.3344 50 1 -0.6874 -6.6234 5.7831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:03 Heat of formation + Delta-G solvation = -48.992383 kcal Electronic energy + Delta-G solvation = -30004.450250 eV Core-core repulsion = 26031.705141 eV Total energy + Delta-G solvation = -3972.745109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67871 -39.31079 -38.10397 -36.82472 -36.35667 -34.03736 -33.36675 -31.82311 -30.75733 -28.93848 -27.54330 -27.36503 -26.05670 -25.76274 -25.34752 -24.36103 -22.97592 -20.91804 -19.93146 -18.91832 -18.73224 -18.10667 -17.64445 -16.25671 -15.91631 -15.64973 -15.19383 -14.75315 -14.73966 -14.49774 -14.17184 -14.07098 -13.71202 -13.62186 -13.00068 -12.97749 -12.86194 -12.65009 -12.45506 -12.39883 -12.25317 -12.19318 -11.91490 -11.87524 -11.42771 -11.26688 -11.23130 -11.18400 -11.06003 -10.90164 -10.72992 -10.49142 -10.43073 -10.24333 -9.85033 -9.67940 -9.50280 -9.41013 -9.32646 -8.83207 -8.55993 -8.38423 -6.05088 -4.15618 0.44602 0.74411 2.67164 3.02999 3.26329 3.27813 3.33616 3.37146 3.53431 3.63155 3.98628 4.37118 4.53697 4.63387 4.68561 4.80971 4.87387 5.05700 5.16430 5.21757 5.37002 5.38907 5.39733 5.54052 5.55746 5.59838 5.63498 5.67507 5.79557 5.87970 6.02112 6.08980 6.14316 6.16763 6.24917 6.45193 6.66185 6.70601 6.79133 6.86019 6.92156 6.97433 7.15214 7.30698 7.51801 7.65871 7.83442 7.87815 7.97018 8.09621 8.32979 8.47059 8.84866 9.50478 10.96332 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.002607 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.742593 B =10739.493960 C =10766.946757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.228 3.772 3 N -0.519 5.519 4 C 0.362 3.638 5 C 0.000 4.000 6 C -0.137 4.137 7 C -0.129 4.129 8 C -0.135 4.135 9 N -0.535 5.535 10 C 0.398 3.602 11 O -0.466 6.466 12 C -0.250 4.250 13 C 0.569 3.431 14 O -0.542 6.542 15 N -0.698 5.698 16 C 0.131 3.869 17 C 0.057 3.943 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.507 4.507 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.885 5.885 24 Si 0.894 3.106 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.412 0.588 41 H 0.400 0.600 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.005 0.995 45 H 0.086 0.914 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.086 0.914 49 H 0.005 0.995 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 18.454 -8.451 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 N -0.234 5.234 4 C 0.095 3.905 5 C -0.002 4.002 6 C -0.194 4.194 7 C -0.187 4.187 8 C -0.193 4.193 9 N -0.259 5.259 10 C 0.210 3.790 11 O -0.274 6.274 12 C -0.259 4.259 13 C 0.351 3.649 14 O -0.420 6.420 15 N -0.347 5.347 16 C 0.009 3.991 17 C 0.056 3.944 18 C -0.189 4.189 19 C -0.189 4.189 20 C -0.545 4.545 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.524 5.524 24 Si 0.722 3.278 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.273 0.727 41 H 0.235 0.765 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.105 0.895 49 H 0.024 0.976 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.499 18.794 -8.394 22.269 hybrid contribution -0.558 -1.820 0.028 1.904 sum 7.942 16.974 -8.365 20.523 Atomic orbital electron populations 1.20926 0.86816 1.04845 1.04575 1.21802 0.97688 0.85861 0.86512 1.68016 1.09294 1.29356 1.16760 1.22993 0.86075 0.93315 0.88113 1.19463 0.95164 0.87724 0.97890 1.21856 1.02662 0.99444 0.95487 1.21727 0.92248 1.01309 1.03380 1.21845 1.02657 0.99435 0.95407 1.67844 1.42243 0.98037 1.17804 1.19390 0.85586 0.85800 0.88255 1.84659 1.72483 1.35788 1.34498 1.21918 0.95096 0.97372 1.11560 1.17543 0.79093 0.83337 0.84910 1.90799 1.55035 1.64924 1.31260 1.46326 1.57657 1.23333 1.07394 1.21833 0.95067 0.81245 1.00990 1.18357 0.93478 0.94896 0.87648 1.21836 0.96215 0.96539 1.04313 1.21838 0.97761 0.94899 1.04396 1.20960 1.37327 1.03547 0.92683 0.92385 1.24879 0.95555 0.97530 0.95509 1.69800 1.46999 1.38344 0.97231 0.86566 0.79681 0.84062 0.77533 1.20702 1.21257 1.19893 0.88672 0.89153 0.89434 0.92574 0.91411 0.91235 0.91965 0.92228 0.91830 0.91261 0.91425 0.92713 0.72676 0.76504 0.92322 0.92363 0.97584 0.89538 0.95343 0.95315 0.89511 0.97639 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.85 36.01 0.35 -0.94 16 2 C 0.23 3.07 6.86 -81.85 -0.56 2.51 16 3 N -0.52 -6.67 9.70 -6.72 -0.07 -6.74 16 4 C 0.36 4.54 6.25 -157.14 -0.98 3.56 16 5 C 0.00 0.00 0.92 -155.66 -0.14 -0.15 16 6 C -0.14 -1.14 8.36 37.16 0.31 -0.82 16 7 C -0.13 -1.12 7.66 37.16 0.28 -0.83 16 8 C -0.14 -1.08 8.37 37.16 0.31 -0.77 16 9 N -0.53 -7.30 9.00 -10.47 -0.09 -7.40 16 10 C 0.40 5.74 7.85 -16.19 -0.13 5.61 16 11 O -0.47 -6.25 13.10 -17.54 -0.23 -6.48 16 12 C -0.25 -3.76 5.67 -104.56 -0.59 -4.35 16 13 C 0.57 9.84 5.51 -12.47 -0.07 9.78 16 14 O -0.54 -10.92 17.11 5.28 0.09 -10.83 16 15 N -0.70 -12.42 4.96 -61.35 -0.30 -12.72 16 16 C 0.13 2.69 4.50 -4.04 -0.02 2.68 16 17 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 18 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 19 C -0.13 -2.89 8.08 37.15 0.30 -2.59 16 20 C -0.51 -13.03 8.01 -34.44 -0.28 -13.30 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 22 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 23 N -0.89 -23.39 9.35 55.43 0.52 -22.87 16 24 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.09 7.18 -51.93 -0.37 0.72 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.61 8.00 -51.93 -0.42 0.19 16 34 H 0.06 0.57 8.03 -51.93 -0.42 0.16 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.07 0.59 8.00 -51.93 -0.42 0.17 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.41 3.70 9.06 45.56 0.41 4.11 16 41 H 0.40 6.82 6.15 -40.82 -0.25 6.57 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 45 H 0.09 2.16 6.07 -51.93 -0.31 1.85 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 49 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 50 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -29.67 401.65 -7.54 -37.21 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.41 Total: 7.74 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.08 Total: 0.56 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.06 Total: -49.73 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.14 Total: -17.31 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.67 -7.54 -37.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.779 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds