Wall clock time and date at job start Tue Mar 31 2020 18:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00318 * 2 1 4 4 N 1.34782 * 119.99682 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.00198 * 185.41141 * 4 2 1 6 6 C 1.38762 * 120.03070 * 24.54908 * 5 4 2 7 7 C 1.38757 * 119.85452 * 180.22684 * 6 5 4 8 8 N 1.39683 * 120.03920 * 179.77240 * 7 6 5 9 9 C 1.46494 * 119.99827 * 179.72655 * 8 7 6 10 10 C 1.53000 * 109.47101 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47283 * 59.99128 * 10 9 8 12 12 O 1.42907 * 109.46923 * 299.99976 * 10 9 8 13 13 C 1.52998 * 109.47395 * 180.02562 * 10 9 8 14 14 N 1.46899 * 109.46960 * 185.58461 * 13 10 9 15 15 C 1.46902 * 111.00069 * 199.31447 * 14 13 10 16 16 C 1.46908 * 110.99823 * 75.36187 * 14 13 10 17 17 C 1.50704 * 109.46781 * 189.99579 * 16 14 13 18 18 H 1.07997 * 120.00231 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99687 * 179.97438 * 17 16 14 20 20 N 1.31506 * 120.00165 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47091 * 90.00333 * 21 19 17 23 23 H 1.48504 * 109.46672 * 209.99944 * 21 19 17 24 24 H 1.48497 * 109.47303 * 330.00016 * 21 19 17 25 25 C 1.38986 * 119.92483 * 359.49649 * 7 6 5 26 26 C 1.38132 * 120.06162 * 0.22958 * 25 7 6 27 27 C 1.38184 * 120.14681 * 0.02562 * 26 25 7 28 28 C 1.50690 * 119.96284 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.47481 * 270.00414 * 1 2 3 30 30 H 1.09002 * 109.46978 * 30.00252 * 1 2 3 31 31 H 1.08997 * 109.47841 * 149.99924 * 1 2 3 32 32 H 0.97003 * 119.99891 * 5.40939 * 4 2 1 33 33 H 1.08002 * 120.07032 * 359.97438 * 6 5 4 34 34 H 0.96997 * 119.99837 * 359.72585 * 8 7 6 35 35 H 1.09000 * 109.47252 * 60.00160 * 9 8 7 36 36 H 1.09005 * 109.47104 * 299.99694 * 9 8 7 37 37 H 0.96698 * 113.99636 * 300.00240 * 12 10 9 38 38 H 1.08996 * 109.47234 * 65.58586 * 13 10 9 39 39 H 1.08999 * 109.46724 * 305.57915 * 13 10 9 40 40 H 1.09002 * 109.47153 * 291.03740 * 15 14 13 41 41 H 1.08999 * 109.46974 * 51.03390 * 15 14 13 42 42 H 1.08996 * 109.47538 * 171.03901 * 15 14 13 43 43 H 1.08992 * 109.47106 * 309.99692 * 16 14 13 44 44 H 1.09005 * 109.46629 * 70.00194 * 16 14 13 45 45 H 0.97002 * 120.00538 * 180.02562 * 20 19 17 46 46 H 1.07997 * 119.97095 * 180.24844 * 25 7 6 47 47 H 1.08006 * 119.92514 * 180.02562 * 26 25 7 48 48 H 1.09003 * 109.47337 * 89.99705 * 28 27 26 49 49 H 1.09004 * 109.47659 * 209.99875 * 28 27 26 50 50 H 1.09007 * 109.47416 * 329.99903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5753 -1.1701 0.1148 6 6 4.2247 -0.1032 0.7195 7 6 5.6081 -0.1076 0.8266 8 7 6.2661 0.9666 1.4303 9 6 7.7262 0.9583 1.5484 10 6 8.1890 2.2407 2.2428 11 1 7.7444 2.2966 3.2364 12 8 7.7797 3.3733 1.4735 13 6 9.7141 2.2324 2.3655 14 7 10.1486 3.3966 3.1490 15 6 11.5692 3.6881 2.9150 16 6 9.8805 3.1981 4.5797 17 6 10.1073 4.4924 5.3175 18 1 10.4189 5.3743 4.7776 19 6 9.9159 4.5510 6.6817 20 7 9.5360 3.4772 7.3390 21 14 10.1963 6.1556 7.5961 22 1 8.9302 6.9306 7.6354 23 1 10.6413 5.8639 8.9825 24 1 11.2401 6.9476 6.8974 25 6 6.3380 -1.1846 0.3377 26 6 5.6878 -2.2475 -0.2585 27 6 4.3106 -2.2436 -0.3714 28 6 3.6055 -3.4056 -1.0221 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3635 -0.8899 -0.5138 32 1 1.6990 -2.0055 -0.0783 33 1 3.6548 0.7306 1.1022 34 1 5.7561 1.7179 1.7713 35 1 8.1708 0.9020 0.5547 36 1 8.0384 0.0946 2.1356 37 1 8.1387 3.3894 0.5757 38 1 10.1588 2.2769 1.3714 39 1 10.0333 1.3181 2.8659 40 1 12.1791 2.8968 3.3510 41 1 11.7571 3.7426 1.8427 42 1 11.8256 4.6411 3.3777 43 1 8.8472 2.8790 4.7149 44 1 10.5513 2.4337 4.9723 45 1 9.4010 3.5184 8.2987 46 1 7.4145 -1.1906 0.4244 47 1 6.2572 -3.0835 -0.6373 48 1 3.3594 -4.1510 -0.2658 49 1 2.6898 -3.0548 -1.4980 50 1 4.2574 -3.8518 -1.7732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583199201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:23 Heat of formation + Delta-G solvation = -53.638626 kcal Electronic energy + Delta-G solvation = -28434.036031 eV Core-core repulsion = 24461.089446 eV Total energy + Delta-G solvation = -3972.946585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82197 -39.04788 -38.07610 -36.22462 -35.34216 -34.21169 -32.49806 -31.82396 -31.09050 -29.72954 -28.84102 -27.35237 -26.54465 -25.03319 -23.68454 -23.23350 -21.76893 -21.10739 -20.43162 -20.10888 -18.10608 -17.20679 -16.62569 -16.42242 -15.96707 -15.79516 -15.61544 -15.32687 -14.75345 -14.66613 -14.45742 -14.13142 -14.04848 -13.82752 -13.63145 -13.49592 -13.33720 -13.04367 -13.03323 -12.69054 -12.47224 -12.41795 -12.03890 -11.94158 -11.59204 -11.49426 -11.43210 -11.16431 -10.95399 -10.82634 -10.73990 -10.62247 -10.39979 -9.93699 -9.78257 -9.71386 -9.68563 -9.15785 -8.41676 -8.24196 -7.25708 -7.22555 -6.01637 -4.02279 1.29402 1.56355 2.38745 2.78700 3.34127 3.39723 3.43278 3.48210 3.86739 4.38241 4.43294 4.64048 4.74315 4.79295 4.80442 4.91076 4.97153 5.10356 5.20177 5.27924 5.30644 5.34949 5.38337 5.39417 5.39763 5.53250 5.64166 5.67584 5.70114 5.72213 5.85159 6.00338 6.06878 6.18000 6.21887 6.33512 6.41396 6.45703 6.51593 6.70873 6.87498 7.15898 7.24332 7.29943 7.43457 7.79359 7.81184 7.85047 8.02828 8.08236 8.19362 8.54656 9.05030 9.61789 11.09464 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.002155 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.420111 B =12992.153957 C =13974.972978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.517 6.517 4 N -0.670 5.670 5 C 0.191 3.809 6 C -0.207 4.207 7 C 0.239 3.761 8 N -0.733 5.733 9 C 0.094 3.906 10 C 0.104 3.896 11 H 0.110 0.890 12 O -0.540 6.540 13 C 0.029 3.971 14 N -0.532 5.532 15 C 0.041 3.959 16 C 0.192 3.808 17 C -0.505 4.505 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.216 4.216 26 C -0.051 4.051 27 C -0.187 4.187 28 C -0.101 4.101 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.410 0.590 33 H 0.143 0.857 34 H 0.407 0.593 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.364 0.636 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.012 0.988 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.030 0.970 44 H -0.010 1.010 45 H 0.261 0.739 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 -15.738 -18.309 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.392 6.392 4 N -0.315 5.315 5 C 0.096 3.904 6 C -0.232 4.232 7 C 0.133 3.867 8 N -0.361 5.361 9 C -0.032 4.032 10 C 0.044 3.956 11 H 0.128 0.872 12 O -0.343 6.343 13 C -0.101 4.101 14 N -0.256 5.256 15 C -0.107 4.107 16 C 0.067 3.933 17 C -0.543 4.543 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.540 5.540 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.239 4.239 26 C -0.070 4.070 27 C -0.192 4.192 28 C -0.158 4.158 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.246 0.754 33 H 0.161 0.839 34 H 0.243 0.757 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.210 0.790 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.008 0.992 45 H 0.070 0.930 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.474 -14.456 -17.689 27.044 hybrid contribution 0.555 -0.331 0.556 0.852 sum -13.919 -14.787 -17.133 26.569 Atomic orbital electron populations 1.21903 0.90855 1.05160 1.05198 1.21024 0.90874 0.83265 0.75479 1.90746 1.70199 1.31332 1.46939 1.43673 1.05708 1.09807 1.72274 1.17225 0.81857 0.95090 0.96270 1.20702 0.92712 1.01870 1.07945 1.17665 0.90854 0.87604 0.90555 1.44638 1.05820 1.20947 1.64731 1.22086 0.80970 0.99689 1.00436 1.22156 0.94422 0.83271 0.95795 0.87224 1.86683 1.74167 1.45244 1.28255 1.22607 0.94979 0.94074 0.98456 1.62036 1.17226 1.34999 1.11371 1.22190 0.88643 1.01286 0.98600 1.19799 0.96238 0.96697 0.80577 1.21148 1.45204 0.96164 0.91803 0.91859 1.24991 0.95454 0.96603 0.97649 1.69950 1.47517 1.28144 1.08379 0.86490 0.78535 0.83568 0.78774 1.20592 1.21363 1.19872 1.20610 0.99629 0.95393 1.08275 1.20494 0.92739 0.97118 0.96641 1.19236 0.93813 0.97914 1.08224 1.20548 0.99789 0.95731 0.99757 0.88381 0.88468 0.90070 0.75409 0.83915 0.75731 0.92227 0.91486 0.78980 0.91848 0.94727 0.96948 0.93861 0.90883 0.95215 0.99244 0.92954 0.86194 0.86084 0.92001 0.92670 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.31 36.00 0.37 -0.46 16 2 C 0.51 4.89 7.75 -10.99 -0.09 4.80 16 3 O -0.52 -7.52 14.24 5.55 0.08 -7.44 16 4 N -0.67 -5.73 4.98 -9.88 -0.05 -5.78 16 5 C 0.19 2.22 6.41 -83.72 -0.54 1.68 16 6 C -0.21 -2.90 8.57 -39.20 -0.34 -3.23 16 7 C 0.24 3.28 6.65 -83.81 -0.56 2.72 16 8 N -0.73 -10.12 5.62 -58.65 -0.33 -10.45 16 9 C 0.09 1.22 4.57 -4.04 -0.02 1.20 16 10 C 0.10 1.66 3.14 -26.73 -0.08 1.57 16 11 H 0.11 2.11 6.63 -51.93 -0.34 1.76 16 12 O -0.54 -8.92 13.04 -35.23 -0.46 -9.38 16 13 C 0.03 0.49 4.63 -3.83 -0.02 0.47 16 14 N -0.53 -11.44 4.64 -244.37 -1.13 -12.58 16 15 C 0.04 0.80 9.31 60.07 0.56 1.36 16 16 C 0.19 5.02 4.55 -4.97 -0.02 5.00 16 17 C -0.50 -14.42 8.58 -34.44 -0.30 -14.72 16 18 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.05 13.28 55.43 0.74 -26.31 16 21 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.22 -2.62 9.31 -39.34 -0.37 -2.98 16 26 C -0.05 -0.53 9.68 -39.64 -0.38 -0.92 16 27 C -0.19 -1.91 5.90 -104.40 -0.62 -2.52 16 28 C -0.10 -0.67 9.44 36.00 0.34 -0.33 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.41 2.02 7.37 -40.82 -0.30 1.72 16 33 H 0.14 2.22 5.76 -52.49 -0.30 1.91 16 34 H 0.41 5.96 8.36 -40.82 -0.34 5.62 16 35 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 36 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 37 H 0.36 4.64 9.04 45.56 0.41 5.05 16 38 H 0.06 0.90 7.76 -51.93 -0.40 0.50 16 39 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 40 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 41 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 42 H 0.07 1.52 7.01 -51.93 -0.36 1.15 16 43 H 0.03 0.83 6.54 -51.93 -0.34 0.49 16 44 H -0.01 -0.28 8.07 -51.93 -0.42 -0.70 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.12 1.33 6.72 -52.49 -0.35 0.97 16 47 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.05 0.30 6.97 -51.93 -0.36 -0.06 16 50 H 0.06 0.39 8.09 -51.92 -0.42 -0.03 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -35.28 405.12 -9.45 -44.73 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.23 Total: 8.94 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.15 Total: -4.90 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.78 Total: -55.12 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.38 Total: -16.81 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.28 -9.45 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583199201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.909 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds