Wall clock time and date at job start Tue Mar 31 2020 18:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00318 * 2 1 4 4 N 1.34782 * 119.99682 * 179.97438 * 2 1 3 5 5 C 1.39922 * 120.00198 * 185.41141 * 4 2 1 6 6 C 1.38762 * 120.03070 * 24.54908 * 5 4 2 7 7 C 1.38757 * 119.85452 * 180.22684 * 6 5 4 8 8 N 1.39683 * 120.03920 * 179.77240 * 7 6 5 9 9 C 1.46494 * 119.99827 * 179.72655 * 8 7 6 10 10 C 1.53000 * 109.47101 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47283 * 59.99128 * 10 9 8 12 12 O 1.42907 * 109.46923 * 299.99976 * 10 9 8 13 13 C 1.52998 * 109.47395 * 180.02562 * 10 9 8 14 14 N 1.46899 * 109.46960 * 185.58461 * 13 10 9 15 15 C 1.46902 * 111.00069 * 199.31447 * 14 13 10 16 16 C 1.46908 * 110.99823 * 75.36187 * 14 13 10 17 17 C 1.50704 * 109.46781 * 189.99579 * 16 14 13 18 18 H 1.07997 * 120.00231 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99687 * 179.97438 * 17 16 14 20 20 N 1.31506 * 120.00165 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47091 * 90.00333 * 21 19 17 23 23 H 1.48504 * 109.46672 * 209.99944 * 21 19 17 24 24 H 1.48497 * 109.47303 * 330.00016 * 21 19 17 25 25 C 1.38986 * 119.92483 * 359.49649 * 7 6 5 26 26 C 1.38132 * 120.06162 * 0.22958 * 25 7 6 27 27 C 1.38184 * 120.14681 * 0.02562 * 26 25 7 28 28 C 1.50690 * 119.96284 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.47481 * 270.00414 * 1 2 3 30 30 H 1.09002 * 109.46978 * 30.00252 * 1 2 3 31 31 H 1.08997 * 109.47841 * 149.99924 * 1 2 3 32 32 H 0.97003 * 119.99891 * 5.40939 * 4 2 1 33 33 H 1.08002 * 120.07032 * 359.97438 * 6 5 4 34 34 H 0.96997 * 119.99837 * 359.72585 * 8 7 6 35 35 H 1.09000 * 109.47252 * 60.00160 * 9 8 7 36 36 H 1.09005 * 109.47104 * 299.99694 * 9 8 7 37 37 H 0.96698 * 113.99636 * 300.00240 * 12 10 9 38 38 H 1.08996 * 109.47234 * 65.58586 * 13 10 9 39 39 H 1.08999 * 109.46724 * 305.57915 * 13 10 9 40 40 H 1.09002 * 109.47153 * 291.03740 * 15 14 13 41 41 H 1.08999 * 109.46974 * 51.03390 * 15 14 13 42 42 H 1.08996 * 109.47538 * 171.03901 * 15 14 13 43 43 H 1.08992 * 109.47106 * 309.99692 * 16 14 13 44 44 H 1.09005 * 109.46629 * 70.00194 * 16 14 13 45 45 H 0.97002 * 120.00538 * 180.02562 * 20 19 17 46 46 H 1.07997 * 119.97095 * 180.24844 * 25 7 6 47 47 H 1.08006 * 119.92514 * 180.02562 * 26 25 7 48 48 H 1.09003 * 109.47337 * 89.99705 * 28 27 26 49 49 H 1.09004 * 109.47659 * 209.99875 * 28 27 26 50 50 H 1.09007 * 109.47416 * 329.99903 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5753 -1.1701 0.1148 6 6 4.2247 -0.1032 0.7195 7 6 5.6081 -0.1076 0.8266 8 7 6.2661 0.9666 1.4303 9 6 7.7262 0.9583 1.5484 10 6 8.1890 2.2407 2.2428 11 1 7.7444 2.2966 3.2364 12 8 7.7797 3.3733 1.4735 13 6 9.7141 2.2324 2.3655 14 7 10.1486 3.3966 3.1490 15 6 11.5692 3.6881 2.9150 16 6 9.8805 3.1981 4.5797 17 6 10.1073 4.4924 5.3175 18 1 10.4189 5.3743 4.7776 19 6 9.9159 4.5510 6.6817 20 7 9.5360 3.4772 7.3390 21 14 10.1963 6.1556 7.5961 22 1 8.9302 6.9306 7.6354 23 1 10.6413 5.8639 8.9825 24 1 11.2401 6.9476 6.8974 25 6 6.3380 -1.1846 0.3377 26 6 5.6878 -2.2475 -0.2585 27 6 4.3106 -2.2436 -0.3714 28 6 3.6055 -3.4056 -1.0221 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3635 -0.8899 -0.5138 32 1 1.6990 -2.0055 -0.0783 33 1 3.6548 0.7306 1.1022 34 1 5.7561 1.7179 1.7713 35 1 8.1708 0.9020 0.5547 36 1 8.0384 0.0946 2.1356 37 1 8.1387 3.3894 0.5757 38 1 10.1588 2.2769 1.3714 39 1 10.0333 1.3181 2.8659 40 1 12.1791 2.8968 3.3510 41 1 11.7571 3.7426 1.8427 42 1 11.8256 4.6411 3.3777 43 1 8.8472 2.8790 4.7149 44 1 10.5513 2.4337 4.9723 45 1 9.4010 3.5184 8.2987 46 1 7.4145 -1.1906 0.4244 47 1 6.2572 -3.0835 -0.6373 48 1 3.3594 -4.1510 -0.2658 49 1 2.6898 -3.0548 -1.4980 50 1 4.2574 -3.8518 -1.7732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583199201.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:22 Heat of formation + Delta-G solvation = -81.821873 kcal Electronic energy + Delta-G solvation = -28435.258148 eV Core-core repulsion = 24461.089446 eV Total energy + Delta-G solvation = -3974.168702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.64069 -40.05309 -39.31842 -37.54707 -36.59459 -35.11215 -34.63828 -32.76680 -31.77695 -30.90862 -29.63397 -29.31685 -27.65558 -26.20811 -25.23648 -24.29614 -23.09020 -21.99511 -21.71486 -21.28438 -18.98007 -18.64347 -18.05139 -17.62529 -17.11480 -16.87057 -16.60865 -16.54438 -16.44983 -15.90303 -15.52158 -15.32011 -15.18454 -15.00945 -14.78592 -14.57841 -14.30672 -14.20278 -14.02575 -13.82856 -13.41090 -13.18062 -13.13740 -13.05397 -12.98361 -12.83094 -12.59273 -12.55375 -12.41914 -12.38131 -12.31027 -12.12937 -11.71096 -11.58951 -11.36731 -10.90572 -10.79115 -10.63192 -10.56950 -9.13665 -8.97930 -8.23071 -8.20337 -6.32479 0.40397 0.67394 1.37780 1.40171 1.50705 1.63051 2.09662 2.37530 2.44593 2.97293 3.09315 3.23569 3.57616 3.79558 3.84836 4.00791 4.03942 4.19333 4.25044 4.31857 4.39571 4.42878 4.51392 4.55055 4.56613 4.60841 4.63396 4.66998 4.76650 4.83461 4.92360 4.94309 5.04301 5.07219 5.09620 5.18081 5.19802 5.28146 5.37770 5.39546 5.54880 5.62677 5.68194 6.01444 6.04241 6.31276 6.44910 6.47517 6.62318 6.72295 6.83399 6.95384 7.14200 7.37005 8.88067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.002155 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.420111 B =12992.153957 C =13974.972978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.497 3.503 3 O -0.575 6.575 4 N -0.657 5.657 5 C 0.180 3.820 6 C -0.234 4.234 7 C 0.218 3.782 8 N -0.743 5.743 9 C 0.109 3.891 10 C 0.114 3.886 11 H 0.066 0.934 12 O -0.559 6.559 13 C 0.029 3.971 14 N -0.545 5.545 15 C 0.043 3.957 16 C 0.208 3.792 17 C -0.523 4.523 18 H 0.060 0.940 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.224 4.224 26 C -0.053 4.053 27 C -0.183 4.183 28 C -0.100 4.100 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.428 0.572 33 H 0.117 0.883 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.382 0.618 38 H 0.103 0.897 39 H 0.035 0.965 40 H 0.010 0.990 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.003 0.997 44 H -0.038 1.038 45 H 0.264 0.736 46 H 0.130 0.870 47 H 0.151 0.849 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.783 -17.343 -20.365 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.288 3.712 3 O -0.454 6.454 4 N -0.303 5.303 5 C 0.084 3.916 6 C -0.259 4.259 7 C 0.113 3.887 8 N -0.371 5.371 9 C -0.016 4.016 10 C 0.054 3.946 11 H 0.084 0.916 12 O -0.365 6.365 13 C -0.100 4.100 14 N -0.269 5.269 15 C -0.105 4.105 16 C 0.082 3.918 17 C -0.562 4.562 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.248 4.248 26 C -0.071 4.071 27 C -0.187 4.187 28 C -0.157 4.157 29 H 0.130 0.870 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.269 0.731 33 H 0.135 0.865 34 H 0.231 0.769 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.121 0.879 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.021 0.979 44 H -0.020 1.020 45 H 0.073 0.927 46 H 0.148 0.852 47 H 0.168 0.832 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.855 -16.122 -19.790 29.534 hybrid contribution 0.615 0.089 1.110 1.272 sum -14.240 -16.033 -18.680 28.439 Atomic orbital electron populations 1.21936 0.86735 1.06876 1.06517 1.21997 0.92809 0.82538 0.73897 1.90731 1.71707 1.33381 1.49576 1.43645 1.04697 1.10626 1.71308 1.17436 0.83399 0.94874 0.95940 1.20689 0.93093 1.02382 1.09754 1.17862 0.91017 0.88197 0.91624 1.44645 1.05965 1.21038 1.65449 1.21921 0.80748 0.97712 1.01210 1.21868 0.93678 0.84705 0.94334 0.91567 1.86641 1.74628 1.45627 1.29596 1.22724 0.95495 0.92280 0.99464 1.61915 1.18838 1.37407 1.08734 1.22211 0.87196 1.00089 1.01031 1.19409 0.93862 0.94913 0.83600 1.21483 1.45248 0.96896 0.92526 0.92133 1.25922 0.94992 1.00285 0.98632 1.70075 1.48306 1.30384 1.08786 0.85397 0.78700 0.79084 0.77537 1.20147 1.20520 1.18720 1.20831 1.00198 0.95342 1.08380 1.20910 0.93255 0.97289 0.95695 1.19690 0.93974 0.98236 1.06810 1.20637 1.00233 0.94526 1.00308 0.87047 0.88668 0.86423 0.73146 0.86528 0.76904 0.89777 0.91299 0.76911 0.87910 0.94715 0.97159 0.89735 0.92830 0.97939 1.02028 0.92711 0.85194 0.83154 0.90364 0.91333 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.31 71.23 0.73 -0.55 16 2 C 0.50 9.61 7.75 87.65 0.68 10.29 16 3 O -0.57 -17.84 14.24 -3.05 -0.04 -17.89 16 4 N -0.66 -10.59 4.98 -303.56 -1.51 -12.10 16 5 C 0.18 4.12 6.41 38.14 0.24 4.37 16 6 C -0.23 -6.94 8.57 22.52 0.19 -6.75 16 7 C 0.22 6.19 6.65 38.19 0.25 6.45 16 8 N -0.74 -21.70 5.62 -339.48 -1.91 -23.61 16 9 C 0.11 2.85 4.57 86.38 0.40 3.24 16 10 C 0.11 3.77 3.14 30.59 0.10 3.86 16 11 H 0.07 2.77 6.63 -2.39 -0.02 2.76 16 12 O -0.56 -18.72 13.04 -148.98 -1.94 -20.66 16 13 C 0.03 0.98 4.63 86.30 0.40 1.38 16 14 N -0.55 -23.67 4.64 -927.04 -4.30 -27.97 16 15 C 0.04 1.63 9.31 127.69 1.19 2.82 16 16 C 0.21 11.40 4.55 85.56 0.39 11.79 16 17 C -0.52 -30.76 8.58 25.60 0.22 -30.54 16 18 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 19 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 20 N -0.93 -57.83 13.28 21.45 0.28 -57.55 16 21 Si 0.97 45.85 29.54 68.60 2.03 47.87 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 25 C -0.22 -5.27 9.31 22.42 0.21 -5.06 16 26 C -0.05 -1.00 9.68 22.23 0.22 -0.78 16 27 C -0.18 -3.35 5.90 -19.72 -0.12 -3.47 16 28 C -0.10 -0.97 9.44 71.23 0.67 -0.30 16 29 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.43 3.18 7.37 -92.71 -0.68 2.50 16 33 H 0.12 4.04 5.76 -2.91 -0.02 4.02 16 34 H 0.40 12.84 8.36 -92.71 -0.77 12.06 16 35 H 0.08 1.79 7.95 -2.39 -0.02 1.77 16 36 H 0.07 1.76 7.95 -2.38 -0.02 1.74 16 37 H 0.38 9.37 9.04 -74.06 -0.67 8.70 16 38 H 0.10 2.62 7.76 -2.39 -0.02 2.61 16 39 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 40 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 41 H 0.08 2.49 7.86 -2.39 -0.02 2.48 16 42 H 0.05 2.22 7.01 -2.39 -0.02 2.20 16 43 H 0.00 0.15 6.54 -2.39 -0.02 0.14 16 44 H -0.04 -2.23 8.07 -2.38 -0.02 -2.25 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.13 2.69 6.72 -2.91 -0.02 2.67 16 47 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 48 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.49 6.97 -2.38 -0.02 0.48 16 50 H 0.08 0.61 8.09 -2.38 -0.02 0.60 16 Total: -1.00 -81.84 405.12 -2.32 -84.15 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -1.15 Total: 30.57 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 6.24 Total: -2.83 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -7.44 Total: -121.23 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.99 Total: -38.55 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -81.84 -2.32 -84.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583199201.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.332 kcal (2) G-P(sol) polarization free energy of solvation -81.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds