Wall clock time and date at job start Tue Mar 31 2020 19:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35685 * 117.00180 * 2 1 4 4 N 1.32280 * 119.68255 * 0.24318 * 3 2 1 5 5 C 1.31930 * 121.64639 * 180.28675 * 4 3 2 6 6 C 1.50698 * 119.58502 * 179.75138 * 5 4 3 7 7 C 1.38091 * 120.83384 * 359.73029 * 5 4 3 8 8 C 1.38783 * 119.28682 * 0.02562 * 7 5 4 9 9 C 1.50701 * 120.75595 * 179.97438 * 8 7 5 10 10 C 1.38423 * 118.48549 * 359.97438 * 8 7 5 11 11 C 1.50701 * 120.44190 * 179.97438 * 10 8 7 12 12 N 1.46499 * 109.46992 * 90.00041 * 11 10 8 13 13 C 1.34779 * 119.99872 * 179.97438 * 12 11 10 14 14 O 1.21590 * 120.00297 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99768 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99449 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46592 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47129 * 300.00266 * 17 16 15 19 19 C 1.52996 * 109.46864 * 60.00596 * 17 16 15 20 20 C 1.50704 * 109.46925 * 180.02562 * 17 16 15 21 21 H 1.08003 * 119.99728 * 0.02562 * 20 17 16 22 22 C 1.37867 * 120.00037 * 180.02562 * 20 17 16 23 23 N 1.31524 * 120.00289 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00229 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47203 * 89.99774 * 24 22 20 26 26 H 1.48501 * 109.47104 * 209.99888 * 24 22 20 27 27 H 1.48504 * 109.47144 * 329.99940 * 24 22 20 28 28 H 1.09004 * 109.46920 * 59.99594 * 1 2 3 29 29 H 1.08991 * 109.47149 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46670 * 300.00265 * 1 2 3 31 31 H 1.09002 * 109.47467 * 269.98359 * 6 5 4 32 32 H 1.08999 * 109.47067 * 29.97857 * 6 5 4 33 33 H 1.08997 * 109.47200 * 149.97795 * 6 5 4 34 34 H 1.07997 * 120.35909 * 180.02562 * 7 5 4 35 35 H 1.09002 * 109.47148 * 270.01670 * 9 8 7 36 36 H 1.08994 * 109.47318 * 30.02036 * 9 8 7 37 37 H 1.09004 * 109.46968 * 150.02061 * 9 8 7 38 38 H 1.09002 * 109.47060 * 210.00254 * 11 10 8 39 39 H 1.09001 * 109.47380 * 330.00341 * 11 10 8 40 40 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 41 41 H 0.96992 * 119.99896 * 0.02562 * 15 13 12 42 42 H 1.09000 * 109.47319 * 299.99842 * 16 15 13 43 43 H 1.08996 * 109.47236 * 60.00639 * 16 15 13 44 44 H 1.08997 * 109.47608 * 60.00408 * 18 17 16 45 45 H 1.08999 * 109.46920 * 180.02562 * 18 17 16 46 46 H 1.08996 * 109.47454 * 299.99716 * 18 17 16 47 47 H 1.09000 * 109.47680 * 59.99662 * 19 17 16 48 48 H 1.09005 * 109.47142 * 179.97438 * 19 17 16 49 49 H 1.09007 * 109.46959 * 299.99308 * 19 17 16 50 50 H 0.96993 * 120.00414 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3143 0.0049 5 6 1.8768 3.5097 -0.0006 6 6 1.0043 4.7384 -0.0003 7 6 3.2506 3.6491 -0.0060 8 6 4.0483 2.5135 -0.0063 9 6 5.5510 2.6272 -0.0128 10 6 3.4322 1.2739 -0.0005 11 6 4.2558 0.0119 -0.0012 12 7 4.5289 -0.3937 1.3798 13 6 5.2537 -1.5031 1.6255 14 8 5.6814 -2.1671 0.7010 15 7 5.5045 -1.8765 2.8961 16 6 6.2919 -3.0828 3.1631 17 6 6.4289 -3.2781 4.6744 18 6 7.1328 -2.0641 5.2838 19 6 5.0395 -3.4279 5.2972 20 6 7.2394 -4.5186 4.9492 21 1 7.6192 -5.1083 4.1279 22 6 7.4960 -4.9005 6.2488 23 7 7.0340 -4.1820 7.2488 24 14 8.5013 -6.4377 6.5894 25 1 9.9400 -6.0798 6.6729 26 1 8.0654 -7.0394 7.8751 27 1 8.2976 -7.4159 5.4908 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7900 5.0321 -1.0279 32 1 0.0702 4.5206 0.5175 33 1 1.5215 5.5511 0.5096 34 1 3.6996 4.6314 -0.0100 35 1 5.9091 2.6522 -1.0420 36 1 5.8483 3.5431 0.4977 37 1 5.9826 1.7683 0.5012 38 1 3.7067 -0.7800 -0.5107 39 1 5.1974 0.1927 -0.5197 40 1 4.1874 0.1357 2.1174 41 1 5.1630 -1.3471 3.6335 42 1 5.7905 -3.9476 2.7285 43 1 7.2819 -2.9759 2.7198 44 1 6.5470 -1.1667 5.0852 45 1 7.2308 -2.2035 6.3604 46 1 8.1227 -1.9575 4.8401 47 1 4.5379 -4.2927 4.8630 48 1 5.1370 -3.5675 6.3739 49 1 4.4536 -2.5304 5.0985 50 1 7.2148 -4.4505 8.1632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590921425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:22 Heat of formation + Delta-G solvation = -66.732743 kcal Electronic energy + Delta-G solvation = -29203.425211 eV Core-core repulsion = 25229.910823 eV Total energy + Delta-G solvation = -3973.514388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.99387 -40.91288 -39.14086 -38.28511 -36.64115 -34.99443 -34.47877 -33.05043 -32.52576 -30.15468 -28.67082 -28.16698 -27.55144 -27.41510 -26.70887 -25.36655 -23.43558 -22.05188 -21.73714 -20.57031 -19.64606 -18.90487 -18.18767 -17.76371 -17.45665 -16.99584 -16.58974 -16.52343 -16.16537 -15.44106 -15.34916 -15.23342 -15.02672 -14.90877 -14.68262 -14.49562 -14.11916 -13.99714 -13.93145 -13.58592 -13.28157 -13.21643 -13.15153 -13.09859 -13.08380 -12.73244 -12.66349 -12.58196 -12.38072 -12.23445 -12.12612 -11.91601 -11.46923 -11.42413 -11.15793 -10.69651 -10.67271 -10.45167 -10.39621 -10.28105 -9.64717 -9.41005 -8.00892 -6.16400 -0.04180 0.25371 1.43633 1.46199 1.54690 1.86200 2.09107 2.23062 2.47313 2.67695 3.15286 3.22652 3.48218 3.66578 3.71890 3.87277 4.05476 4.37837 4.38975 4.39599 4.43650 4.53991 4.56127 4.58138 4.69278 4.72740 4.73884 4.75257 4.80146 4.83271 5.01422 5.03630 5.05887 5.07362 5.12411 5.21730 5.25086 5.33836 5.39848 5.46298 5.56345 5.64665 5.68350 5.68819 6.05434 6.16258 6.22026 6.23443 6.45233 6.83876 6.87853 7.15437 7.51153 7.64553 8.98183 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.002275 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.227742 B =12306.252824 C =12572.872089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.329 3.671 4 N -0.562 5.562 5 C 0.165 3.835 6 C -0.102 4.102 7 C -0.209 4.209 8 C 0.016 3.984 9 C -0.121 4.121 10 C -0.202 4.202 11 C 0.204 3.796 12 N -0.727 5.727 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.726 5.726 16 C 0.168 3.832 17 C 0.052 3.948 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.527 4.527 21 H 0.045 0.955 22 C 0.027 3.973 23 N -0.900 5.900 24 Si 0.946 3.054 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.276 1.276 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.404 0.596 41 H 0.404 0.596 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.019 0.981 47 H 0.017 0.983 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 21.806 -13.341 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.227 6.227 3 C 0.150 3.850 4 N -0.287 5.287 5 C 0.029 3.971 6 C -0.159 4.159 7 C -0.229 4.229 8 C 0.008 3.992 9 C -0.178 4.178 10 C -0.205 4.205 11 C 0.079 3.921 12 N -0.383 5.383 13 C 0.399 3.601 14 O -0.522 6.522 15 N -0.381 5.381 16 C 0.044 3.956 17 C 0.052 3.948 18 C -0.177 4.177 19 C -0.178 4.178 20 C -0.565 4.565 21 H 0.063 0.937 22 C -0.172 4.172 23 N -0.539 5.539 24 Si 0.773 3.227 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.201 1.201 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.187 0.813 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.240 0.760 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.539 20.829 -13.970 28.040 hybrid contribution 0.768 -0.805 0.904 1.434 sum -11.771 20.025 -13.066 26.651 Atomic orbital electron populations 1.23005 0.75955 1.04202 1.02373 1.86301 1.24283 1.24776 1.87382 1.19788 0.89047 0.84935 0.91212 1.67234 1.40992 0.98779 1.21743 1.21605 0.93080 0.92149 0.90242 1.20855 0.98854 0.91923 1.04295 1.22018 0.93325 1.00308 1.07263 1.20344 0.97983 0.90785 0.90054 1.20970 0.88278 1.04307 1.04209 1.19649 0.90814 0.95992 1.14055 1.19566 0.97953 0.92302 0.82238 1.44983 1.57339 1.26952 1.09009 1.16132 0.79258 0.81281 0.83391 1.90855 1.59386 1.57223 1.44695 1.45202 1.57741 1.29626 1.05548 1.21127 0.92622 0.84266 0.97610 1.18352 0.93730 0.94420 0.88327 1.21653 0.97597 0.95713 1.02735 1.21667 0.95975 0.97358 1.02783 1.21267 1.33452 1.09697 0.92110 0.93683 1.25459 0.96592 0.99089 0.96097 1.69911 1.45868 1.39278 0.98829 0.85748 0.79166 0.80514 0.77311 1.20409 1.20854 1.20126 0.92062 0.87014 0.92316 0.88907 0.90833 0.87990 0.81279 0.88817 0.88409 0.91707 0.92580 0.90610 0.76119 0.75992 0.94824 0.94428 0.94580 0.91896 0.96185 0.96417 0.91831 0.94712 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 113.37 1.18 1.89 16 2 O -0.32 -8.03 9.54 -90.04 -0.86 -8.89 16 3 C 0.33 7.85 7.47 84.78 0.63 8.49 16 4 N -0.56 -11.99 9.13 -296.97 -2.71 -14.70 16 5 C 0.17 2.62 6.78 42.51 0.29 2.91 16 6 C -0.10 -0.87 10.17 71.24 0.72 -0.15 16 7 C -0.21 -2.82 9.44 22.37 0.21 -2.61 16 8 C 0.02 0.27 5.91 -19.69 -0.12 0.15 16 9 C -0.12 -1.59 9.28 71.24 0.66 -0.93 16 10 C -0.20 -4.45 5.28 -19.67 -0.10 -4.55 16 11 C 0.20 5.33 4.84 85.63 0.41 5.74 16 12 N -0.73 -20.29 5.55 -482.28 -2.68 -22.96 16 13 C 0.70 25.75 8.57 179.05 1.53 27.28 16 14 O -0.64 -28.98 16.34 -4.00 -0.07 -29.04 16 15 N -0.73 -26.54 4.96 -478.51 -2.37 -28.92 16 16 C 0.17 7.45 4.50 86.38 0.39 7.84 16 17 C 0.05 2.47 0.50 -52.93 -0.03 2.45 16 18 C -0.12 -5.36 8.08 71.98 0.58 -4.77 16 19 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 20 C -0.53 -28.26 8.01 25.60 0.21 -28.05 16 21 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 22 C 0.03 1.45 5.15 84.65 0.44 1.88 16 23 N -0.90 -48.41 9.35 21.44 0.20 -48.21 16 24 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 34 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 37 H 0.06 1.10 6.82 -2.39 -0.02 1.08 16 38 H 0.06 1.71 7.54 -2.39 -0.02 1.69 16 39 H 0.08 1.95 6.81 -2.39 -0.02 1.93 16 40 H 0.40 9.50 8.48 -92.71 -0.79 8.72 16 41 H 0.40 12.90 6.18 -92.71 -0.57 12.33 16 42 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 45 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 3.20 6.07 -2.38 -0.01 3.18 16 49 H 0.03 1.34 6.86 -2.38 -0.02 1.32 16 50 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -68.17 401.48 0.73 -67.44 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.40 Total: 27.53 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 7.59 Total: 12.68 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -7.56 Total: -114.79 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.92 Total: -37.93 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -68.17 0.73 -67.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590921425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.708 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds