Wall clock time and date at job start Tue Mar 31 2020 20:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30448 * 125.99099 * 2 1 4 4 N 1.39933 * 108.89613 * 180.26729 * 3 2 1 5 5 C 1.46500 * 125.75145 * 179.73014 * 4 3 2 6 6 C 1.52995 * 109.47133 * 233.53146 * 5 4 3 7 7 C 1.52998 * 109.47201 * 353.53183 * 5 4 3 8 8 C 1.52998 * 109.46953 * 113.53196 * 5 4 3 9 9 C 1.34261 * 108.49399 * 359.74909 * 4 3 2 10 10 C 1.50693 * 126.29054 * 180.02562 * 9 4 3 11 11 C 1.38042 * 107.41536 * 0.02562 * 9 4 3 12 12 C 1.47426 * 126.41441 * 179.97438 * 11 9 4 13 13 O 1.21606 * 119.99978 * 90.00190 * 12 11 9 14 14 N 1.34776 * 120.00423 * 270.00315 * 12 11 9 15 15 C 1.47030 * 125.64238 * 359.97191 * 14 12 11 16 16 C 1.54327 * 107.26484 * 178.97567 * 15 14 12 17 17 C 1.55152 * 102.94735 * 337.80888 * 16 15 14 18 18 O 1.42906 * 111.00364 * 277.39103 * 17 16 15 19 19 C 1.50699 * 111.00723 * 153.57888 * 17 16 15 20 20 H 1.08005 * 119.99817 * 244.58258 * 19 17 16 21 21 C 1.37873 * 120.00181 * 64.30350 * 19 17 16 22 22 N 1.31513 * 120.00043 * 0.28034 * 21 19 17 23 23 Si 1.86800 * 120.00227 * 180.27754 * 21 19 17 24 24 H 1.48499 * 109.46857 * 59.99840 * 23 21 19 25 25 H 1.48492 * 109.47212 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46975 * 300.00070 * 23 21 19 27 27 C 1.47463 * 125.63354 * 179.97438 * 14 12 11 28 28 H 1.09004 * 109.46468 * 270.14625 * 1 2 3 29 29 H 1.09001 * 109.47040 * 30.13866 * 1 2 3 30 30 H 1.08994 * 109.47187 * 150.14854 * 1 2 3 31 31 H 1.08994 * 109.47453 * 60.00162 * 6 5 4 32 32 H 1.09004 * 109.47304 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47138 * 300.00067 * 6 5 4 34 34 H 1.09001 * 109.47005 * 60.00152 * 7 5 4 35 35 H 1.09004 * 109.46776 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.47295 * 299.99680 * 7 5 4 37 37 H 1.08998 * 109.47297 * 66.23416 * 8 5 4 38 38 H 1.09004 * 109.47073 * 186.23078 * 8 5 4 39 39 H 1.09004 * 109.47269 * 306.23120 * 8 5 4 40 40 H 1.09002 * 109.47275 * 264.96209 * 10 9 4 41 41 H 1.09004 * 109.47504 * 24.95814 * 10 9 4 42 42 H 1.08999 * 109.47184 * 144.96293 * 10 9 4 43 43 H 1.09002 * 109.88234 * 59.56490 * 15 14 12 44 44 H 1.08996 * 110.01675 * 298.46303 * 15 14 12 45 45 H 1.08999 * 110.71734 * 219.44560 * 16 15 14 46 46 H 1.09005 * 110.86957 * 96.24646 * 16 15 14 47 47 H 0.96703 * 113.99992 * 295.41660 * 18 17 16 48 48 H 0.97002 * 120.00243 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.35214 * 85.25255 * 27 14 12 50 50 H 1.09003 * 110.40582 * 322.91240 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6441 -0.0062 5 6 4.7788 1.5289 -0.0138 6 6 5.6970 1.1516 -1.1778 7 6 4.3187 2.9790 -0.1764 8 6 5.5398 1.3802 1.3051 9 6 3.6439 -0.6981 -0.0044 10 6 4.8800 -1.5601 -0.0089 11 6 2.3373 -1.1433 0.0023 12 6 1.8916 -2.5485 0.0058 13 8 1.7127 -3.1270 1.0604 14 7 1.6823 -3.1921 -1.1597 15 6 1.8587 -2.6154 -2.5006 16 6 1.5305 -3.7240 -3.5228 17 6 1.7352 -5.0250 -2.7025 18 8 3.1150 -5.3950 -2.6650 19 6 0.8926 -6.1476 -3.2509 20 1 0.1011 -6.5716 -2.6507 21 6 1.1284 -6.6297 -4.5209 22 7 2.0922 -6.1134 -5.2518 23 14 0.0790 -8.0160 -5.2036 24 1 -1.3427 -7.5886 -5.2402 25 1 0.5319 -8.3491 -6.5780 26 1 0.2138 -9.2128 -4.3348 27 6 1.2384 -4.5913 -1.3008 28 1 -0.3632 0.0026 1.0277 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3633 -0.8913 -0.5115 31 1 5.1549 1.2575 -2.1174 32 1 6.5660 1.8096 -1.1832 33 1 6.0248 0.1185 -1.0619 34 1 3.6645 3.2479 0.6529 35 1 5.1875 3.6374 -0.1816 36 1 3.7765 3.0850 -1.1161 37 1 5.9622 0.3775 1.3699 38 1 6.3430 2.1161 1.3461 39 1 4.8566 1.5413 2.1391 40 1 5.1217 -1.8434 -1.0333 41 1 5.7130 -1.0031 0.4201 42 1 4.6994 -2.4572 0.5832 43 1 2.8897 -2.2857 -2.6296 44 1 1.1805 -1.7731 -2.6367 45 1 2.2201 -3.6874 -4.3662 46 1 0.4991 -3.6428 -3.8660 47 1 3.4836 -5.6274 -3.5284 48 1 2.2579 -6.4523 -6.1454 49 1 0.1513 -4.6512 -1.2484 50 1 1.6912 -5.2134 -0.5287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:30 Heat of formation + Delta-G solvation = -35.601614 kcal Electronic energy + Delta-G solvation = -30847.946403 eV Core-core repulsion = 26875.781961 eV Total energy + Delta-G solvation = -3972.164441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.69029 -40.74577 -38.86009 -37.84181 -36.03181 -34.15372 -33.93844 -32.63614 -31.40769 -30.10100 -29.06607 -28.41455 -28.35026 -28.06277 -26.89539 -24.39570 -22.84319 -21.77810 -21.40158 -20.01184 -19.88412 -19.08046 -18.21892 -17.23841 -16.95496 -16.78460 -16.43481 -16.22040 -15.94752 -15.43384 -15.31463 -15.10537 -14.82422 -14.72737 -14.42029 -14.19001 -13.89244 -13.73445 -13.62649 -13.50971 -13.36644 -13.20986 -13.19926 -13.11390 -13.08494 -13.02780 -12.75170 -12.70551 -12.61190 -12.47314 -12.27106 -12.16289 -12.13227 -11.86603 -11.52018 -11.29474 -10.98559 -10.61183 -10.13945 -10.11868 -9.59384 -9.53147 -8.22328 -6.36692 0.68034 1.30919 1.39787 1.45488 1.47350 1.53212 1.54578 2.20260 2.42820 3.02728 3.29674 3.49127 3.69028 3.73915 3.79570 3.85806 3.88482 3.95493 4.07012 4.27070 4.31961 4.38266 4.45550 4.55513 4.57965 4.60737 4.63890 4.66851 4.68377 4.69000 4.73351 4.81999 4.83934 4.84688 4.90720 4.94485 5.00809 5.15287 5.17193 5.22671 5.25772 5.30806 5.45497 5.52195 5.54905 5.78625 6.02088 6.08994 6.59346 6.62959 6.67000 7.14878 7.33935 7.44621 8.83650 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.003141 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.167330 B = 8912.127836 C = 9335.663058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.099 3.901 3 N -0.306 5.306 4 N -0.342 5.342 5 C 0.166 3.834 6 C -0.167 4.167 7 C -0.136 4.136 8 C -0.162 4.162 9 C 0.134 3.866 10 C -0.101 4.101 11 C -0.305 4.305 12 C 0.611 3.389 13 O -0.591 6.591 14 N -0.597 5.597 15 C 0.121 3.879 16 C -0.125 4.125 17 C 0.239 3.761 18 O -0.591 6.591 19 C -0.562 4.562 20 H 0.056 0.944 21 C 0.038 3.962 22 N -0.907 5.907 23 Si 0.959 3.041 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.278 1.278 27 C 0.124 3.876 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.379 0.621 48 H 0.271 0.729 49 H 0.074 0.926 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 18.391 5.392 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 N -0.127 5.127 4 N -0.122 5.122 5 C 0.085 3.915 6 C -0.225 4.225 7 C -0.193 4.193 8 C -0.220 4.220 9 C 0.002 3.998 10 C -0.159 4.159 11 C -0.320 4.320 12 C 0.400 3.600 13 O -0.472 6.472 14 N -0.328 5.328 15 C -0.002 4.002 16 C -0.164 4.164 17 C 0.199 3.801 18 O -0.400 6.400 19 C -0.600 4.600 20 H 0.075 0.925 21 C -0.163 4.163 22 N -0.546 5.546 23 Si 0.785 3.215 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.204 1.204 27 C 0.002 3.998 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.229 0.771 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.912 19.654 6.457 22.149 hybrid contribution -0.757 -2.160 -1.014 2.503 sum 7.156 17.494 5.443 19.669 Atomic orbital electron populations 1.20266 0.85162 1.03884 1.03811 1.22550 0.97713 0.88587 0.97829 1.76951 0.86852 1.22151 1.26796 1.48896 1.05541 1.03386 1.54405 1.21269 0.81355 0.90448 0.98440 1.22454 0.99834 1.04246 0.95968 1.21872 1.02814 0.92067 1.02565 1.22388 1.00915 1.04512 0.94194 1.21433 0.95831 0.85498 0.97066 1.20852 0.92465 0.98015 1.04530 1.19747 0.93707 0.92802 1.25748 1.17301 0.75864 0.85213 0.81612 1.90696 1.54984 1.69453 1.32082 1.48578 1.64933 1.13085 1.06181 1.21957 1.00589 0.96543 0.81093 1.22971 1.01423 0.94710 0.97272 1.19706 0.80079 0.91280 0.89012 1.86107 1.27094 1.90094 1.36729 1.21656 1.17872 1.19799 1.00683 0.92532 1.25578 0.96069 0.98260 0.96409 1.69705 1.31214 1.42582 1.11126 0.85600 0.79232 0.79429 0.77276 1.19633 1.20488 1.20380 1.22207 0.98362 0.81172 0.98064 0.89640 0.88639 0.91304 0.92627 0.86980 0.90857 0.92508 0.87804 0.92682 0.91150 0.87001 0.93062 0.88765 0.87113 0.91273 0.92182 0.91058 0.90813 0.91784 0.77075 0.91909 0.90758 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.90 10.28 71.24 0.73 -1.16 16 2 C 0.10 3.14 7.26 43.52 0.32 3.45 16 3 N -0.31 -9.01 11.54 -46.67 -0.54 -9.55 16 4 N -0.34 -8.70 3.43 -293.18 -1.01 -9.71 16 5 C 0.17 2.75 1.06 3.60 0.00 2.75 16 6 C -0.17 -2.17 8.35 71.98 0.60 -1.57 16 7 C -0.14 -1.99 7.99 71.98 0.58 -1.41 16 8 C -0.16 -2.10 8.49 71.98 0.61 -1.49 16 9 C 0.13 3.90 6.53 42.14 0.28 4.18 16 10 C -0.10 -2.41 8.36 71.23 0.60 -1.81 16 11 C -0.31 -10.67 5.06 -20.15 -0.10 -10.78 16 12 C 0.61 25.41 7.10 86.66 0.62 26.03 16 13 O -0.59 -28.65 17.36 -4.05 -0.07 -28.72 16 14 N -0.60 -24.74 3.33 -815.54 -2.71 -27.45 16 15 C 0.12 4.52 6.47 86.73 0.56 5.08 16 16 C -0.13 -5.38 5.50 31.78 0.17 -5.20 16 17 C 0.24 11.62 0.88 -10.15 -0.01 11.61 16 18 O -0.59 -30.16 13.17 -148.98 -1.96 -32.12 16 19 C -0.56 -29.31 8.25 25.60 0.21 -29.10 16 20 H 0.06 2.96 7.78 -2.91 -0.02 2.94 16 21 C 0.04 1.93 5.29 84.65 0.45 2.38 16 22 N -0.91 -45.85 10.76 21.45 0.23 -45.62 16 23 Si 0.96 40.81 29.54 68.60 2.03 42.83 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.12 5.75 6.08 86.85 0.53 6.28 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.90 8.00 -2.39 -0.02 1.88 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.97 5.09 -2.39 -0.01 0.96 16 34 H 0.06 0.99 8.11 -2.39 -0.02 0.97 16 35 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.89 5.65 -2.39 -0.01 0.88 16 38 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.05 0.84 8.14 -2.38 -0.02 0.83 16 40 H 0.09 2.16 7.97 -2.39 -0.02 2.14 16 41 H 0.11 1.83 4.34 -2.38 -0.01 1.82 16 42 H 0.07 1.95 8.08 -2.39 -0.02 1.93 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.07 3.30 7.68 -2.39 -0.02 3.28 16 46 H 0.06 2.77 8.03 -2.38 -0.02 2.75 16 47 H 0.38 19.37 7.26 -74.06 -0.54 18.84 16 48 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 49 H 0.07 3.34 8.03 -2.39 -0.02 3.32 16 50 H 0.05 2.47 8.04 -2.39 -0.02 2.45 16 Total: -1.00 -66.31 397.20 2.51 -63.80 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.41 Total: 37.30 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.14 Total: 9.24 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.03 Total: -92.33 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -2.03 Total: -60.84 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -66.31 2.51 -63.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.201 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds