Wall clock time and date at job start Tue Mar 31 2020 20:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38047 * 126.28913 * 2 1 4 4 C 1.47428 * 126.41608 * 359.95466 * 3 2 1 5 5 O 1.21605 * 120.00107 * 34.22254 * 4 3 2 6 6 N 1.34776 * 119.99986 * 214.22171 * 4 3 2 7 7 C 1.47423 * 125.64831 * 355.71792 * 6 4 3 8 8 C 1.54913 * 104.83256 * 155.90710 * 7 6 4 9 9 C 1.55152 * 101.61592 * 36.98690 * 8 7 6 10 10 O 1.42901 * 110.72230 * 82.88401 * 9 8 7 11 11 C 1.50701 * 110.71736 * 206.15366 * 9 8 7 12 12 H 1.08007 * 119.99952 * 124.71965 * 11 9 8 13 13 C 1.37876 * 120.00324 * 304.71924 * 11 9 8 14 14 N 1.31515 * 119.99955 * 174.54778 * 13 11 9 15 15 Si 1.86798 * 119.99867 * 354.54443 * 13 11 9 16 16 H 1.48510 * 109.46698 * 94.56718 * 15 13 11 17 17 H 1.48499 * 109.47242 * 214.56771 * 15 13 11 18 18 H 1.48495 * 109.47454 * 334.56942 * 15 13 11 19 19 C 1.47025 * 125.64821 * 175.75471 * 6 4 3 20 20 C 1.41291 * 107.16935 * 180.21931 * 3 2 1 21 21 N 1.30450 * 108.02080 * 359.58843 * 20 3 2 22 22 N 1.34250 * 126.29351 * 179.97438 * 2 1 3 23 23 C 1.46506 * 125.75133 * 0.02562 * 22 2 1 24 24 C 1.53002 * 109.47257 * 89.99980 * 23 22 2 25 25 C 1.53003 * 109.47202 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47027 * 65.00165 * 25 24 23 27 27 C 1.53002 * 109.46836 * 185.00210 * 25 24 23 28 28 H 1.09005 * 109.46827 * 90.02334 * 1 2 3 29 29 H 1.08996 * 109.47505 * 210.02297 * 1 2 3 30 30 H 1.09001 * 109.47414 * 330.03121 * 1 2 3 31 31 H 1.08997 * 110.36665 * 37.06784 * 7 6 4 32 32 H 1.09005 * 110.36546 * 274.74424 * 7 6 4 33 33 H 1.08999 * 111.00392 * 155.08132 * 8 7 6 34 34 H 1.09002 * 110.99749 * 278.89538 * 8 7 6 35 35 H 0.96696 * 114.00440 * 179.97438 * 10 9 8 36 36 H 0.97003 * 119.99988 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.87966 * 300.44723 * 19 6 4 38 38 H 1.08997 * 109.87833 * 61.45603 * 19 6 4 39 39 H 1.08001 * 125.98833 * 179.73644 * 20 3 2 40 40 H 1.09001 * 109.46731 * 209.99857 * 23 22 2 41 41 H 1.08996 * 109.47481 * 330.00139 * 23 22 2 42 42 H 1.09002 * 109.46805 * 300.00318 * 24 23 22 43 43 H 1.09003 * 109.47105 * 59.99644 * 24 23 22 44 44 H 1.08998 * 109.46701 * 304.99553 * 25 24 23 45 45 H 1.09004 * 109.47028 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.46839 * 299.99880 * 26 25 24 47 47 H 1.08992 * 109.47584 * 59.99821 * 26 25 24 48 48 H 1.08995 * 109.47874 * 59.99842 * 27 25 24 49 49 H 1.09000 * 109.46701 * 180.02562 * 27 25 24 50 50 H 1.09006 * 109.46699 * 299.99487 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0009 5 8 0.8732 2.8423 0.5905 6 7 2.6073 3.4504 -0.6573 7 6 3.8947 3.2171 -1.3368 8 6 3.9882 4.3361 -2.4041 9 6 3.3479 5.5353 -1.6563 10 8 4.3074 6.1759 -0.8130 11 6 2.7547 6.5175 -2.6333 12 1 1.7163 6.8025 -2.5492 13 6 3.5375 7.0522 -3.6345 14 7 2.9960 7.8249 -4.5506 15 14 5.3670 6.6793 -3.6894 16 1 5.6098 5.5240 -4.5905 17 1 6.0992 7.8667 -4.1986 18 1 5.8465 6.3506 -2.3230 19 6 2.2414 4.8657 -0.8137 20 6 3.6590 0.6499 -0.0052 21 7 3.6340 -0.6543 0.0009 22 7 2.3017 -1.0821 0.0005 23 6 1.8500 -2.4758 0.0006 24 6 1.6933 -2.9612 -1.4419 25 6 1.2223 -4.4169 -1.4418 26 6 -0.1787 -4.4995 -0.8325 27 6 1.1853 -4.9410 -2.8788 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5133 31 1 3.8999 2.2369 -1.8135 32 1 4.7184 3.2994 -0.6276 33 1 5.0267 4.5451 -2.6609 34 1 3.4126 4.0773 -3.2928 35 1 3.9575 6.9326 -0.3232 36 1 3.5466 8.2009 -5.2552 37 1 1.2841 4.9463 -1.3286 38 1 2.1772 5.3422 0.1645 39 1 4.5449 1.2677 -0.0105 40 1 2.5845 -3.0956 0.5148 41 1 0.8912 -2.5470 0.5140 42 1 0.9589 -2.3412 -1.9561 43 1 2.6522 -2.8900 -1.9554 44 1 1.9113 -5.0216 -0.8522 45 1 -0.5141 -5.5367 -0.8320 46 1 -0.1522 -4.1261 0.1912 47 1 -0.8676 -3.8948 -1.4221 48 1 2.1833 -4.8822 -3.3129 49 1 0.8492 -5.9779 -2.8787 50 1 0.4962 -4.3362 -3.4684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:35 Heat of formation + Delta-G solvation = -13.862969 kcal Electronic energy + Delta-G solvation = -29696.641010 eV Core-core repulsion = 25725.419227 eV Total energy + Delta-G solvation = -3971.221783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.53376 -39.30404 -37.52572 -37.23538 -34.56095 -33.59752 -32.44348 -32.08530 -30.33469 -29.20523 -28.21868 -27.65130 -27.34526 -25.29871 -24.18689 -23.00646 -21.52453 -20.56197 -20.38146 -19.60457 -18.77470 -17.54227 -17.12344 -16.34413 -15.68197 -15.65582 -15.30168 -14.95744 -14.77028 -14.56219 -14.51937 -14.09915 -13.97405 -13.46700 -13.31490 -13.22725 -13.04727 -12.91152 -12.87092 -12.67646 -12.35714 -12.29282 -12.22848 -12.12431 -11.84647 -11.56083 -11.41587 -11.29878 -11.19394 -11.11485 -11.09254 -10.84170 -10.55675 -10.30227 -9.98838 -9.51292 -9.38945 -8.98368 -8.70097 -8.58963 -8.51532 -8.04256 -6.22591 -4.34091 1.56147 2.21206 2.29896 3.27422 3.38802 3.42109 3.60873 3.66590 4.18679 4.24658 4.37182 4.40133 4.46461 4.53684 4.77748 4.82884 4.90419 4.96505 5.05697 5.10819 5.16468 5.18515 5.22729 5.29851 5.39395 5.39524 5.45933 5.48749 5.50182 5.55648 5.68449 5.70483 5.74193 5.81992 5.83807 5.88257 5.92363 6.03045 6.13939 6.40755 6.49236 6.64444 6.69317 6.76594 6.79747 7.16498 7.46736 7.54139 8.04069 8.19995 8.63554 8.75120 8.90576 9.40244 10.87795 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.002665 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.792695 B =10504.842568 C =10933.644049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.147 3.853 3 C -0.283 4.283 4 C 0.605 3.395 5 O -0.556 6.556 6 N -0.603 5.603 7 C 0.100 3.900 8 C -0.126 4.126 9 C 0.216 3.784 10 O -0.575 6.575 11 C -0.550 4.550 12 H 0.078 0.922 13 C 0.088 3.912 14 N -0.886 5.886 15 Si 0.870 3.130 16 H -0.285 1.285 17 H -0.299 1.299 18 H -0.223 1.223 19 C 0.099 3.901 20 C 0.082 3.918 21 N -0.301 5.301 22 N -0.361 5.361 23 C 0.128 3.872 24 C -0.133 4.133 25 C -0.093 4.093 26 C -0.154 4.154 27 C -0.148 4.148 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.366 0.634 36 H 0.267 0.733 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.190 0.810 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -24.105 6.964 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.015 3.985 3 C -0.297 4.297 4 C 0.394 3.606 5 O -0.436 6.436 6 N -0.335 5.335 7 C -0.023 4.023 8 C -0.164 4.164 9 C 0.176 3.824 10 O -0.382 6.382 11 C -0.588 4.588 12 H 0.097 0.903 13 C -0.117 4.117 14 N -0.522 5.522 15 Si 0.698 3.302 16 H -0.212 1.212 17 H -0.226 1.226 18 H -0.145 1.145 19 C -0.023 4.023 20 C -0.105 4.105 21 N -0.120 5.120 22 N -0.141 5.141 23 C 0.008 3.992 24 C -0.171 4.171 25 C -0.112 4.112 26 C -0.211 4.211 27 C -0.205 4.205 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.213 0.787 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.207 0.793 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.078 -25.563 6.938 26.569 hybrid contribution 0.234 1.079 -0.147 1.114 sum -1.844 -24.484 6.791 25.475 Atomic orbital electron populations 1.20675 0.86485 1.04956 1.03880 1.21368 0.94671 0.86247 0.96198 1.19990 0.93011 0.93545 1.23164 1.16841 0.82536 0.83152 0.78094 1.90704 1.26330 1.81584 1.45000 1.48329 1.22339 1.10212 1.52590 1.22482 0.85476 0.99339 0.94966 1.23081 1.01658 0.94154 0.97534 1.19996 0.84531 0.90395 0.87492 1.86481 1.41205 1.48440 1.62046 1.21188 0.99081 1.26198 1.12316 0.90349 1.24968 0.99122 0.93558 0.94095 1.69935 1.36575 1.32119 1.13581 0.87163 0.85414 0.77113 0.80521 1.21168 1.22614 1.14549 1.22787 1.00570 0.79159 0.99834 1.24167 0.97402 0.91753 0.97155 1.77150 0.96081 1.13178 1.25624 1.48448 1.03977 1.05799 1.55915 1.21877 1.01081 0.77494 0.98792 1.22081 1.03008 0.96454 0.95580 1.21056 0.97485 0.95087 0.97560 1.21953 0.96302 1.02129 1.00715 1.21828 1.02108 1.00963 0.95614 0.89828 0.91111 0.87508 0.91266 0.91493 0.90644 0.89373 0.78687 0.92361 0.90808 0.92307 0.79337 0.88538 0.88658 0.91028 0.90659 0.90798 0.92377 0.92544 0.92288 0.92507 0.92435 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.90 36.01 0.36 -0.73 16 2 C 0.15 1.95 7.00 -81.60 -0.57 1.38 16 3 C -0.28 -4.45 5.65 -105.07 -0.59 -5.04 16 4 C 0.60 11.28 7.66 -12.52 -0.10 11.18 16 5 O -0.56 -11.66 15.76 5.27 0.08 -11.58 16 6 N -0.60 -11.38 3.33 -171.76 -0.57 -11.95 16 7 C 0.10 1.71 5.35 -2.53 -0.01 1.70 16 8 C -0.13 -2.57 4.73 -24.58 -0.12 -2.68 16 9 C 0.22 4.77 0.68 -89.92 -0.06 4.71 16 10 O -0.58 -12.26 10.52 -35.23 -0.37 -12.63 16 11 C -0.55 -14.51 8.77 -34.44 -0.30 -14.82 16 12 H 0.08 2.26 7.89 -52.48 -0.41 1.84 16 13 C 0.09 2.41 5.42 -17.82 -0.10 2.31 16 14 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 15 Si 0.87 20.74 24.05 -169.99 -4.09 16.65 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.22 -5.13 5.24 56.52 0.30 -4.83 16 19 C 0.10 2.05 6.22 -3.04 -0.02 2.03 16 20 C 0.08 1.17 10.06 -16.98 -0.17 1.00 16 21 N -0.30 -4.20 12.50 30.86 0.39 -3.81 16 22 N -0.36 -4.32 3.58 -56.60 -0.20 -4.53 16 23 C 0.13 1.01 5.97 -4.04 -0.02 0.98 16 24 C -0.13 -0.95 5.01 -26.73 -0.13 -1.08 16 25 C -0.09 -0.50 2.92 -90.62 -0.26 -0.76 16 26 C -0.15 -0.72 8.95 37.15 0.33 -0.38 16 27 C -0.15 -0.82 9.19 37.16 0.34 -0.47 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.54 7.05 -51.93 -0.37 0.17 16 30 H 0.11 1.37 6.56 -51.93 -0.34 1.03 16 31 H 0.07 1.04 6.58 -51.93 -0.34 0.70 16 32 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 33 H 0.08 1.54 4.87 -51.93 -0.25 1.29 16 34 H 0.09 1.84 8.04 -51.93 -0.42 1.42 16 35 H 0.37 6.83 9.07 45.56 0.41 7.24 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.07 1.63 7.71 -51.93 -0.40 1.23 16 38 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.19 2.34 6.49 -52.49 -0.34 2.00 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.57 5.44 -51.93 -0.28 0.28 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.06 0.23 6.57 -51.93 -0.34 -0.11 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -33.05 388.38 -6.94 -39.99 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.37 Total: 7.92 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.43 Total: -0.67 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.39 Total: -45.53 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.29 Total: -24.21 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.09 Total: 16.65 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.05 -6.94 -39.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.124 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds