Wall clock time and date at job start Tue Mar 31 2020 20:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38047 * 126.28913 * 2 1 4 4 C 1.47428 * 126.41608 * 359.95466 * 3 2 1 5 5 O 1.21605 * 120.00107 * 34.22254 * 4 3 2 6 6 N 1.34776 * 119.99986 * 214.22171 * 4 3 2 7 7 C 1.47423 * 125.64831 * 355.71792 * 6 4 3 8 8 C 1.54913 * 104.83256 * 155.90710 * 7 6 4 9 9 C 1.55152 * 101.61592 * 36.98690 * 8 7 6 10 10 O 1.42901 * 110.72230 * 82.88401 * 9 8 7 11 11 C 1.50701 * 110.71736 * 206.15366 * 9 8 7 12 12 H 1.08007 * 119.99952 * 124.71965 * 11 9 8 13 13 C 1.37876 * 120.00324 * 304.71924 * 11 9 8 14 14 N 1.31515 * 119.99955 * 174.54778 * 13 11 9 15 15 Si 1.86798 * 119.99867 * 354.54443 * 13 11 9 16 16 H 1.48510 * 109.46698 * 94.56718 * 15 13 11 17 17 H 1.48499 * 109.47242 * 214.56771 * 15 13 11 18 18 H 1.48495 * 109.47454 * 334.56942 * 15 13 11 19 19 C 1.47025 * 125.64821 * 175.75471 * 6 4 3 20 20 C 1.41291 * 107.16935 * 180.21931 * 3 2 1 21 21 N 1.30450 * 108.02080 * 359.58843 * 20 3 2 22 22 N 1.34250 * 126.29351 * 179.97438 * 2 1 3 23 23 C 1.46506 * 125.75133 * 0.02562 * 22 2 1 24 24 C 1.53002 * 109.47257 * 89.99980 * 23 22 2 25 25 C 1.53003 * 109.47202 * 179.97438 * 24 23 22 26 26 C 1.52995 * 109.47027 * 65.00165 * 25 24 23 27 27 C 1.53002 * 109.46836 * 185.00210 * 25 24 23 28 28 H 1.09005 * 109.46827 * 90.02334 * 1 2 3 29 29 H 1.08996 * 109.47505 * 210.02297 * 1 2 3 30 30 H 1.09001 * 109.47414 * 330.03121 * 1 2 3 31 31 H 1.08997 * 110.36665 * 37.06784 * 7 6 4 32 32 H 1.09005 * 110.36546 * 274.74424 * 7 6 4 33 33 H 1.08999 * 111.00392 * 155.08132 * 8 7 6 34 34 H 1.09002 * 110.99749 * 278.89538 * 8 7 6 35 35 H 0.96696 * 114.00440 * 179.97438 * 10 9 8 36 36 H 0.97003 * 119.99988 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.87966 * 300.44723 * 19 6 4 38 38 H 1.08997 * 109.87833 * 61.45603 * 19 6 4 39 39 H 1.08001 * 125.98833 * 179.73644 * 20 3 2 40 40 H 1.09001 * 109.46731 * 209.99857 * 23 22 2 41 41 H 1.08996 * 109.47481 * 330.00139 * 23 22 2 42 42 H 1.09002 * 109.46805 * 300.00318 * 24 23 22 43 43 H 1.09003 * 109.47105 * 59.99644 * 24 23 22 44 44 H 1.08998 * 109.46701 * 304.99553 * 25 24 23 45 45 H 1.09004 * 109.47028 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.46839 * 299.99880 * 26 25 24 47 47 H 1.08992 * 109.47584 * 59.99821 * 26 25 24 48 48 H 1.08995 * 109.47874 * 59.99842 * 27 25 24 49 49 H 1.09000 * 109.46701 * 180.02562 * 27 25 24 50 50 H 1.09006 * 109.46699 * 299.99487 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0009 5 8 0.8732 2.8423 0.5905 6 7 2.6073 3.4504 -0.6573 7 6 3.8947 3.2171 -1.3368 8 6 3.9882 4.3361 -2.4041 9 6 3.3479 5.5353 -1.6563 10 8 4.3074 6.1759 -0.8130 11 6 2.7547 6.5175 -2.6333 12 1 1.7163 6.8025 -2.5492 13 6 3.5375 7.0522 -3.6345 14 7 2.9960 7.8249 -4.5506 15 14 5.3670 6.6793 -3.6894 16 1 5.6098 5.5240 -4.5905 17 1 6.0992 7.8667 -4.1986 18 1 5.8465 6.3506 -2.3230 19 6 2.2414 4.8657 -0.8137 20 6 3.6590 0.6499 -0.0052 21 7 3.6340 -0.6543 0.0009 22 7 2.3017 -1.0821 0.0005 23 6 1.8500 -2.4758 0.0006 24 6 1.6933 -2.9612 -1.4419 25 6 1.2223 -4.4169 -1.4418 26 6 -0.1787 -4.4995 -0.8325 27 6 1.1853 -4.9410 -2.8788 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5133 31 1 3.8999 2.2369 -1.8135 32 1 4.7184 3.2994 -0.6276 33 1 5.0267 4.5451 -2.6609 34 1 3.4126 4.0773 -3.2928 35 1 3.9575 6.9326 -0.3232 36 1 3.5466 8.2009 -5.2552 37 1 1.2841 4.9463 -1.3286 38 1 2.1772 5.3422 0.1645 39 1 4.5449 1.2677 -0.0105 40 1 2.5845 -3.0956 0.5148 41 1 0.8912 -2.5470 0.5140 42 1 0.9589 -2.3412 -1.9561 43 1 2.6522 -2.8900 -1.9554 44 1 1.9113 -5.0216 -0.8522 45 1 -0.5141 -5.5367 -0.8320 46 1 -0.1522 -4.1261 0.1912 47 1 -0.8676 -3.8948 -1.4221 48 1 2.1833 -4.8822 -3.3129 49 1 0.8492 -5.9779 -2.8787 50 1 0.4962 -4.3362 -3.4684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:34 Heat of formation + Delta-G solvation = -37.351033 kcal Electronic energy + Delta-G solvation = -29697.659529 eV Core-core repulsion = 25725.419227 eV Total energy + Delta-G solvation = -3972.240302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.57220 -40.80313 -38.95247 -37.94299 -36.16720 -34.52343 -34.44577 -33.04643 -31.91966 -30.37255 -29.52311 -28.46622 -28.01272 -26.96384 -24.97009 -24.50981 -22.78045 -21.73627 -21.10893 -20.94539 -20.04298 -19.36344 -18.38100 -17.31320 -17.13186 -16.78075 -16.55844 -16.35885 -16.17842 -15.92210 -15.41534 -14.98002 -14.89809 -14.77804 -14.68567 -14.55363 -14.20198 -14.03908 -13.90975 -13.78762 -13.69333 -13.21759 -13.14280 -13.08507 -13.04910 -12.82497 -12.79343 -12.39203 -12.35928 -12.16589 -11.96343 -11.87810 -11.71231 -11.60529 -11.52423 -10.97372 -10.86822 -10.79683 -10.36891 -10.31690 -9.77347 -9.47244 -8.35803 -6.51244 0.50978 1.15526 1.33492 1.38272 1.47804 1.71523 2.00461 2.30458 2.40014 2.99444 3.37483 3.53814 3.56119 3.70522 3.75090 3.85707 3.94517 3.99457 4.04707 4.13131 4.20705 4.24879 4.35506 4.41513 4.43803 4.48917 4.58839 4.60113 4.73815 4.75616 4.79981 4.84866 4.88984 4.95881 4.99428 5.04050 5.06522 5.08107 5.11044 5.16133 5.29036 5.37177 5.42937 5.48497 5.50233 5.53248 5.89773 6.08172 6.51331 6.59810 6.60893 7.15626 7.19148 7.29759 8.78479 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.002665 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.792695 B =10504.842568 C =10933.644049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.154 3.846 3 C -0.315 4.315 4 C 0.605 3.395 5 O -0.588 6.588 6 N -0.607 5.607 7 C 0.110 3.890 8 C -0.130 4.130 9 C 0.219 3.781 10 O -0.573 6.573 11 C -0.551 4.551 12 H 0.036 0.964 13 C 0.036 3.964 14 N -0.936 5.936 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.307 1.307 18 H -0.205 1.205 19 C 0.106 3.894 20 C 0.083 3.917 21 N -0.314 5.314 22 N -0.352 5.352 23 C 0.120 3.880 24 C -0.125 4.125 25 C -0.087 4.087 26 C -0.154 4.154 27 C -0.149 4.149 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.378 0.622 36 H 0.268 0.732 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.205 0.795 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.065 0.935 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 -27.303 8.068 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.020 3.980 3 C -0.330 4.330 4 C 0.396 3.604 5 O -0.470 6.470 6 N -0.338 5.338 7 C -0.012 4.012 8 C -0.168 4.168 9 C 0.179 3.821 10 O -0.380 6.380 11 C -0.589 4.589 12 H 0.054 0.946 13 C -0.165 4.165 14 N -0.574 5.574 15 Si 0.758 3.242 16 H -0.198 1.198 17 H -0.235 1.235 18 H -0.126 1.126 19 C -0.017 4.017 20 C -0.103 4.103 21 N -0.133 5.133 22 N -0.131 5.131 23 C 0.001 3.999 24 C -0.164 4.164 25 C -0.106 4.106 26 C -0.211 4.211 27 C -0.207 4.207 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.226 0.774 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.221 0.779 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.737 -28.806 8.056 29.921 hybrid contribution -0.328 2.032 -0.465 2.110 sum -1.065 -26.774 7.591 27.850 Atomic orbital electron populations 1.20735 0.84821 1.05533 1.04732 1.21697 0.95735 0.86084 0.94475 1.19858 0.94414 0.92281 1.26447 1.17271 0.81844 0.84148 0.77171 1.90680 1.27734 1.82276 1.46346 1.48348 1.23198 1.09249 1.53040 1.22535 0.85115 0.99172 0.94351 1.23036 1.01436 0.94349 0.97950 1.19793 0.85208 0.90041 0.87083 1.86422 1.40719 1.49080 1.61806 1.21407 0.97406 1.26799 1.13276 0.94568 1.25801 1.03709 0.93336 0.93616 1.70070 1.38396 1.34135 1.14833 0.86187 0.79652 0.76859 0.81466 1.19786 1.23548 1.12647 1.22470 0.99014 0.80898 0.99297 1.24365 0.97263 0.91959 0.96758 1.77118 0.97290 1.12995 1.25911 1.48762 1.03196 1.06875 1.54306 1.22290 1.02575 0.75447 0.99605 1.22002 1.01990 0.97547 0.94815 1.21022 0.98194 0.93802 0.97591 1.21962 0.95524 1.02563 1.01075 1.21844 1.01675 1.01430 0.95731 0.88745 0.87540 0.89866 0.88842 0.89306 0.90004 0.90559 0.77374 0.92282 0.93336 0.92167 0.77876 0.87438 0.86165 0.91640 0.92314 0.89997 0.91842 0.91592 0.92586 0.93083 0.91602 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.90 71.24 0.70 -1.22 16 2 C 0.15 3.78 7.00 42.14 0.29 4.07 16 3 C -0.32 -9.44 5.65 -20.15 -0.11 -9.55 16 4 C 0.60 22.23 7.66 86.66 0.66 22.90 16 5 O -0.59 -24.92 15.76 -4.05 -0.06 -24.99 16 6 N -0.61 -22.41 3.33 -815.57 -2.71 -25.13 16 7 C 0.11 3.49 5.35 86.86 0.46 3.96 16 8 C -0.13 -5.05 4.73 31.99 0.15 -4.90 16 9 C 0.22 9.62 0.68 -10.34 -0.01 9.61 16 10 O -0.57 -23.40 10.52 -148.98 -1.57 -24.96 16 11 C -0.55 -29.91 8.77 25.60 0.22 -29.69 16 12 H 0.04 2.21 7.89 -2.91 -0.02 2.19 16 13 C 0.04 1.99 5.42 84.65 0.46 2.45 16 14 N -0.94 -56.68 13.96 21.45 0.30 -56.38 16 15 Si 0.93 42.51 24.05 68.60 1.65 44.16 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.31 -14.38 7.11 99.48 0.71 -13.68 16 18 H -0.20 -8.65 5.24 99.48 0.52 -8.13 16 19 C 0.11 4.47 6.22 86.74 0.54 5.01 16 20 C 0.08 2.18 10.06 85.65 0.86 3.04 16 21 N -0.31 -7.97 12.50 -56.27 -0.70 -8.67 16 22 N -0.35 -7.49 3.58 -332.99 -1.19 -8.68 16 23 C 0.12 1.49 5.97 86.38 0.52 2.01 16 24 C -0.13 -1.49 5.01 30.60 0.15 -1.34 16 25 C -0.09 -0.71 2.92 -10.79 -0.03 -0.74 16 26 C -0.15 -0.97 8.95 71.98 0.64 -0.33 16 27 C -0.15 -1.39 9.19 71.98 0.66 -0.72 16 28 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.11 1.24 7.05 -2.39 -0.02 1.22 16 30 H 0.08 2.08 6.56 -2.39 -0.02 2.06 16 31 H 0.09 2.55 6.58 -2.39 -0.02 2.53 16 32 H 0.09 2.48 7.70 -2.38 -0.02 2.46 16 33 H 0.08 3.09 4.87 -2.39 -0.01 3.08 16 34 H 0.08 3.13 8.04 -2.39 -0.02 3.11 16 35 H 0.38 13.62 9.07 -74.06 -0.67 12.94 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.05 2.25 7.71 -2.39 -0.02 2.23 16 38 H 0.06 2.48 8.07 -2.39 -0.02 2.46 16 39 H 0.20 4.44 6.49 -2.91 -0.02 4.42 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.12 0.92 5.44 -2.39 -0.01 0.91 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 46 H 0.07 0.29 6.57 -2.39 -0.02 0.28 16 47 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -73.31 388.38 1.99 -71.32 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.09 Total: 28.78 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 6.19 Total: 4.55 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -4.31 Total: -98.86 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -1.63 Total: -49.95 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.65 Total: 44.16 kcal Total: -73.31 1.99 -71.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.969 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds