Wall clock time and date at job start Tue Mar 31 2020 20:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30837 * 125.89875 * 2 1 4 4 N 1.40090 * 108.20714 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03481 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47240 * 299.97291 * 5 4 3 7 7 C 1.53001 * 109.47344 * 59.97847 * 5 4 3 8 8 C 1.34947 * 107.92084 * 0.02562 * 4 3 2 9 9 C 1.50706 * 126.12086 * 179.97438 * 8 4 3 10 10 C 1.35306 * 107.74948 * 0.22558 * 8 4 3 11 11 C 1.50700 * 126.04226 * 179.77318 * 10 8 4 12 12 C 1.50699 * 109.47146 * 89.99691 * 11 10 8 13 13 O 1.21287 * 120.00250 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00059 * 180.02562 * 12 11 10 15 15 C 1.47020 * 125.64669 * 0.02966 * 14 12 11 16 16 C 1.54329 * 107.26715 * 181.02017 * 15 14 12 17 17 C 1.55157 * 102.94368 * 22.19389 * 16 15 14 18 18 O 1.42897 * 111.00507 * 82.60976 * 17 16 15 19 19 C 1.50698 * 111.00183 * 206.42229 * 17 16 15 20 20 H 1.08004 * 120.00339 * 118.54384 * 19 17 16 21 21 C 1.37882 * 120.00235 * 298.54312 * 19 17 16 22 22 N 1.31516 * 119.99761 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00123 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46863 * 60.00136 * 23 21 19 25 25 H 1.48502 * 109.46957 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47193 * 300.00003 * 23 21 19 27 27 C 1.47423 * 125.64752 * 179.71596 * 14 12 11 28 28 H 1.08998 * 109.46898 * 90.02301 * 1 2 3 29 29 H 1.08992 * 109.46483 * 210.02269 * 1 2 3 30 30 H 1.08998 * 109.47177 * 330.02730 * 1 2 3 31 31 H 1.09008 * 109.46830 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47119 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47301 * 300.00301 * 6 5 4 34 34 H 1.08998 * 109.46861 * 60.00418 * 6 5 4 35 35 H 1.08996 * 109.47119 * 59.99475 * 7 5 4 36 36 H 1.09000 * 109.47119 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.46575 * 299.99466 * 7 5 4 38 38 H 1.08999 * 109.46995 * 90.02290 * 9 8 4 39 39 H 1.08994 * 109.46790 * 210.01977 * 9 8 4 40 40 H 1.08997 * 109.47305 * 330.02417 * 9 8 4 41 41 H 1.09002 * 109.47598 * 209.99946 * 11 10 8 42 42 H 1.09005 * 109.46892 * 330.00170 * 11 10 8 43 43 H 1.09000 * 109.88264 * 300.43118 * 15 14 12 44 44 H 1.08994 * 109.88633 * 61.60884 * 15 14 12 45 45 H 1.09002 * 110.71735 * 140.55760 * 16 15 14 46 46 H 1.08998 * 110.71903 * 263.64591 * 16 15 14 47 47 H 0.96698 * 114.00498 * 61.45442 * 18 17 16 48 48 H 0.96997 * 119.99980 * 179.97438 * 22 21 19 49 49 H 1.08995 * 110.36965 * 274.75099 * 27 14 12 50 50 H 1.09000 * 110.36766 * 37.07209 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6089 0.6341 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 4.7745 2.3845 -1.2492 7 6 4.7744 2.3836 1.2493 8 6 3.6142 -0.7153 -0.0015 9 6 4.8352 -1.5989 -0.0030 10 6 2.3273 -1.1330 -0.0066 11 6 1.8600 -2.5657 -0.0142 12 6 1.7008 -3.0496 1.4041 13 8 1.9425 -2.3044 2.3300 14 7 1.2898 -4.3107 1.6437 15 6 0.9646 -5.3149 0.6204 16 6 0.5192 -6.5944 1.3594 17 6 0.0768 -6.0583 2.7466 18 8 -1.2605 -5.5569 2.6993 19 6 0.2147 -7.1216 3.8056 20 1 0.8807 -6.9679 4.6418 21 6 -0.5095 -8.2908 3.7071 22 7 -1.3202 -8.4783 2.6886 23 14 -0.3380 -9.6091 5.0194 24 1 -0.7356 -9.0508 6.3367 25 1 -1.2164 -10.7586 4.6840 26 1 1.0737 -10.0657 5.0809 27 6 1.0982 -4.9135 2.9754 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.6909 0.8872 -0.0004 32 1 5.6535 3.0290 -1.2492 33 1 4.7855 1.7556 -2.1394 34 1 3.8736 2.9980 -1.2490 35 1 4.7854 1.7541 2.1390 36 1 5.6534 3.0282 1.2497 37 1 3.8735 2.9972 1.2494 38 1 5.1299 -1.8129 1.0244 39 1 4.6075 -2.5323 -0.5176 40 1 5.6510 -1.0904 -0.5166 41 1 0.9025 -2.6329 -0.5307 42 1 2.5948 -3.1848 -0.5289 43 1 0.1546 -4.9510 -0.0118 44 1 1.8455 -5.5249 0.0138 45 1 -0.3172 -7.0663 0.8437 46 1 1.3513 -7.2913 1.4596 47 1 -1.9217 -6.2215 2.4622 48 1 -1.8294 -9.3009 2.6191 49 1 2.0408 -5.3121 3.3505 50 1 0.6933 -4.1777 3.6702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:44 Heat of formation + Delta-G solvation = -22.443626 kcal Electronic energy + Delta-G solvation = -29911.652785 eV Core-core repulsion = 25940.058917 eV Total energy + Delta-G solvation = -3971.593868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.40013 -39.25790 -37.17513 -35.98199 -34.20472 -33.00250 -32.21480 -32.11994 -29.95024 -29.04936 -28.18509 -27.56506 -27.30711 -26.09389 -24.67225 -22.29721 -21.84041 -20.08326 -19.50642 -18.98992 -18.40970 -17.16779 -16.69674 -16.54744 -15.33610 -15.31594 -14.95316 -14.91996 -14.55748 -14.10480 -14.09487 -13.62790 -13.50566 -13.32404 -13.24490 -13.17785 -12.93176 -12.58942 -12.50182 -12.27385 -12.17890 -12.07290 -12.06176 -11.80933 -11.71471 -11.48164 -11.39512 -11.35921 -11.29374 -11.26152 -10.86117 -10.60762 -10.49283 -10.28112 -10.00462 -9.38427 -9.26482 -8.91011 -8.67443 -8.21379 -8.10806 -7.89645 -6.27806 -4.35628 1.95386 2.47643 2.81890 3.21801 3.22867 3.26761 3.30356 3.78353 4.23599 4.27559 4.59693 4.64054 4.70932 4.86782 4.95559 4.98275 5.18282 5.21975 5.24662 5.30148 5.37378 5.42035 5.45524 5.49043 5.55482 5.59639 5.70224 5.72511 5.76374 5.78078 5.85922 5.89805 5.91454 6.03483 6.05825 6.20320 6.31334 6.34652 6.48022 6.70721 6.84007 6.92554 7.03561 7.15291 7.31543 7.36121 7.73942 7.88721 8.04072 8.25165 8.66346 8.80880 9.31748 9.40887 10.79488 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.002479 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.468591 B =11293.689556 C =11572.977328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.091 3.909 3 N -0.297 5.297 4 N -0.368 5.368 5 C 0.158 3.842 6 C -0.159 4.159 7 C -0.161 4.161 8 C 0.095 3.905 9 C -0.092 4.092 10 C -0.211 4.211 11 C -0.055 4.055 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.610 5.610 15 C 0.099 3.901 16 C -0.136 4.136 17 C 0.248 3.752 18 O -0.582 6.582 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.902 3.098 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.121 3.879 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.380 0.620 48 H 0.268 0.732 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.858 13.775 -11.017 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 N -0.119 5.119 4 N -0.151 5.151 5 C 0.056 3.944 6 C -0.217 4.217 7 C -0.218 4.218 8 C -0.032 4.032 9 C -0.151 4.151 10 C -0.223 4.223 11 C -0.096 4.096 12 C 0.310 3.690 13 O -0.425 6.425 14 N -0.344 5.344 15 C -0.024 4.024 16 C -0.175 4.175 17 C 0.208 3.792 18 O -0.390 6.390 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.729 3.271 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.001 4.001 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.229 0.771 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.367 16.058 -10.457 22.281 hybrid contribution -0.186 -2.325 0.490 2.384 sum 11.181 13.733 -9.967 20.321 Atomic orbital electron populations 1.20165 0.86979 1.03558 1.02462 1.22088 0.96634 0.90204 0.98621 1.77174 0.86121 1.22407 1.26192 1.48440 1.05121 1.03514 1.57989 1.21216 0.84420 0.91714 0.97044 1.22121 1.03282 0.99883 0.96419 1.22120 1.03174 0.99913 0.96629 1.20686 0.96647 0.84621 1.01267 1.20455 0.92890 0.98192 1.03512 1.19042 0.91270 0.94721 1.17218 1.19864 1.02957 0.92074 0.94705 1.20241 0.77215 0.80255 0.91264 1.90658 1.51274 1.54423 1.46134 1.48653 1.65331 1.11099 1.09299 1.22170 0.98524 0.90499 0.91194 1.23169 1.01682 0.93740 0.98895 1.19633 0.80133 0.88201 0.91274 1.86142 1.18062 1.41618 1.93193 1.21416 1.26236 1.00813 1.08862 0.91866 1.24981 0.94310 0.98057 0.95609 1.69706 1.27008 1.27272 1.29469 0.86492 0.78154 0.80541 0.81882 1.20026 1.21146 1.20084 1.22360 0.98479 0.95592 0.83627 0.90736 0.90393 0.91053 0.88431 0.90944 0.92217 0.91095 0.91948 0.90968 0.91105 0.90047 0.89752 0.91484 0.88628 0.89110 0.92414 0.92994 0.89597 0.91458 0.77059 0.92209 0.91313 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.12 36.01 0.36 -0.59 16 2 C 0.09 1.41 7.22 -82.40 -0.59 0.81 16 3 N -0.30 -4.61 12.43 33.67 0.42 -4.19 16 4 N -0.37 -4.91 3.28 -50.69 -0.17 -5.08 16 5 C 0.16 1.50 3.64 -67.93 -0.25 1.25 16 6 C -0.16 -1.26 9.45 37.16 0.35 -0.91 16 7 C -0.16 -1.47 9.45 37.16 0.35 -1.12 16 8 C 0.09 1.30 6.93 -82.26 -0.57 0.73 16 9 C -0.09 -0.93 9.74 36.01 0.35 -0.58 16 10 C -0.21 -3.21 4.59 -105.06 -0.48 -3.69 16 11 C -0.06 -0.79 4.84 -29.04 -0.14 -0.93 16 12 C 0.52 9.85 7.84 -10.99 -0.09 9.77 16 13 O -0.55 -12.33 16.29 5.55 0.09 -12.24 16 14 N -0.61 -11.93 3.32 -170.38 -0.57 -12.49 16 15 C 0.10 1.73 6.49 -3.06 -0.02 1.71 16 16 C -0.14 -2.85 5.37 -24.89 -0.13 -2.98 16 17 C 0.25 5.91 0.87 -89.50 -0.08 5.83 16 18 O -0.58 -14.64 13.17 -35.23 -0.46 -15.11 16 19 C -0.53 -13.81 8.27 -34.44 -0.28 -14.09 16 20 H 0.06 1.63 7.79 -52.48 -0.41 1.23 16 21 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 22 N -0.90 -22.69 10.76 55.43 0.60 -22.10 16 23 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.12 2.71 6.10 -2.41 -0.01 2.70 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.73 6.67 -51.92 -0.35 0.38 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.77 7.14 -51.93 -0.37 0.40 16 40 H 0.07 0.50 7.09 -51.93 -0.37 0.14 16 41 H 0.10 1.25 7.95 -51.93 -0.41 0.83 16 42 H 0.09 1.09 7.14 -51.93 -0.37 0.72 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.88 7.55 -51.93 -0.39 1.48 16 46 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 47 H 0.38 9.49 7.57 45.56 0.34 9.83 16 48 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 49 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 50 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 LS Contribution 405.13 15.07 6.11 6.11 Total: -1.00 -31.42 405.13 -8.11 -39.53 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.77 Total: 10.90 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.33 Total: -0.34 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.28 Total: -43.86 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.37 Total: -27.35 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.42 -8.11 -39.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.090 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds