Wall clock time and date at job start Tue Mar 31 2020 20:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30837 * 125.89875 * 2 1 4 4 N 1.40090 * 108.20714 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03481 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47240 * 299.97291 * 5 4 3 7 7 C 1.53001 * 109.47344 * 59.97847 * 5 4 3 8 8 C 1.34947 * 107.92084 * 0.02562 * 4 3 2 9 9 C 1.50706 * 126.12086 * 179.97438 * 8 4 3 10 10 C 1.35306 * 107.74948 * 0.22558 * 8 4 3 11 11 C 1.50700 * 126.04226 * 179.77318 * 10 8 4 12 12 C 1.50699 * 109.47146 * 89.99691 * 11 10 8 13 13 O 1.21287 * 120.00250 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00059 * 180.02562 * 12 11 10 15 15 C 1.47020 * 125.64669 * 0.02966 * 14 12 11 16 16 C 1.54329 * 107.26715 * 181.02017 * 15 14 12 17 17 C 1.55157 * 102.94368 * 22.19389 * 16 15 14 18 18 O 1.42897 * 111.00507 * 82.60976 * 17 16 15 19 19 C 1.50698 * 111.00183 * 206.42229 * 17 16 15 20 20 H 1.08004 * 120.00339 * 118.54384 * 19 17 16 21 21 C 1.37882 * 120.00235 * 298.54312 * 19 17 16 22 22 N 1.31516 * 119.99761 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 120.00123 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46863 * 60.00136 * 23 21 19 25 25 H 1.48502 * 109.46957 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47193 * 300.00003 * 23 21 19 27 27 C 1.47423 * 125.64752 * 179.71596 * 14 12 11 28 28 H 1.08998 * 109.46898 * 90.02301 * 1 2 3 29 29 H 1.08992 * 109.46483 * 210.02269 * 1 2 3 30 30 H 1.08998 * 109.47177 * 330.02730 * 1 2 3 31 31 H 1.09008 * 109.46830 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47119 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47301 * 300.00301 * 6 5 4 34 34 H 1.08998 * 109.46861 * 60.00418 * 6 5 4 35 35 H 1.08996 * 109.47119 * 59.99475 * 7 5 4 36 36 H 1.09000 * 109.47119 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.46575 * 299.99466 * 7 5 4 38 38 H 1.08999 * 109.46995 * 90.02290 * 9 8 4 39 39 H 1.08994 * 109.46790 * 210.01977 * 9 8 4 40 40 H 1.08997 * 109.47305 * 330.02417 * 9 8 4 41 41 H 1.09002 * 109.47598 * 209.99946 * 11 10 8 42 42 H 1.09005 * 109.46892 * 330.00170 * 11 10 8 43 43 H 1.09000 * 109.88264 * 300.43118 * 15 14 12 44 44 H 1.08994 * 109.88633 * 61.60884 * 15 14 12 45 45 H 1.09002 * 110.71735 * 140.55760 * 16 15 14 46 46 H 1.08998 * 110.71903 * 263.64591 * 16 15 14 47 47 H 0.96698 * 114.00498 * 61.45442 * 18 17 16 48 48 H 0.96997 * 119.99980 * 179.97438 * 22 21 19 49 49 H 1.08995 * 110.36965 * 274.75099 * 27 14 12 50 50 H 1.09000 * 110.36766 * 37.07209 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6089 0.6341 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 4.7745 2.3845 -1.2492 7 6 4.7744 2.3836 1.2493 8 6 3.6142 -0.7153 -0.0015 9 6 4.8352 -1.5989 -0.0030 10 6 2.3273 -1.1330 -0.0066 11 6 1.8600 -2.5657 -0.0142 12 6 1.7008 -3.0496 1.4041 13 8 1.9425 -2.3044 2.3300 14 7 1.2898 -4.3107 1.6437 15 6 0.9646 -5.3149 0.6204 16 6 0.5192 -6.5944 1.3594 17 6 0.0768 -6.0583 2.7466 18 8 -1.2605 -5.5569 2.6993 19 6 0.2147 -7.1216 3.8056 20 1 0.8807 -6.9679 4.6418 21 6 -0.5095 -8.2908 3.7071 22 7 -1.3202 -8.4783 2.6886 23 14 -0.3380 -9.6091 5.0194 24 1 -0.7356 -9.0508 6.3367 25 1 -1.2164 -10.7586 4.6840 26 1 1.0737 -10.0657 5.0809 27 6 1.0982 -4.9135 2.9754 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.6909 0.8872 -0.0004 32 1 5.6535 3.0290 -1.2492 33 1 4.7855 1.7556 -2.1394 34 1 3.8736 2.9980 -1.2490 35 1 4.7854 1.7541 2.1390 36 1 5.6534 3.0282 1.2497 37 1 3.8735 2.9972 1.2494 38 1 5.1299 -1.8129 1.0244 39 1 4.6075 -2.5323 -0.5176 40 1 5.6510 -1.0904 -0.5166 41 1 0.9025 -2.6329 -0.5307 42 1 2.5948 -3.1848 -0.5289 43 1 0.1546 -4.9510 -0.0118 44 1 1.8455 -5.5249 0.0138 45 1 -0.3172 -7.0663 0.8437 46 1 1.3513 -7.2913 1.4596 47 1 -1.9217 -6.2215 2.4622 48 1 -1.8294 -9.3009 2.6191 49 1 2.0408 -5.3121 3.3505 50 1 0.6933 -4.1777 3.6702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:42 Heat of formation + Delta-G solvation = -42.846517 kcal Electronic energy + Delta-G solvation = -29912.537521 eV Core-core repulsion = 25940.058917 eV Total energy + Delta-G solvation = -3972.478604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.42235 -40.81565 -38.84874 -36.84095 -35.98069 -34.18844 -33.99833 -33.16511 -31.50283 -30.30796 -29.71966 -28.29781 -28.23604 -27.43423 -26.24469 -23.81680 -22.73496 -21.65973 -20.91220 -19.99982 -19.74536 -19.04659 -18.05459 -17.58650 -16.94230 -16.75547 -16.46012 -16.27950 -15.76824 -15.47289 -15.31553 -14.95477 -14.69790 -14.36096 -14.33859 -14.15888 -14.03269 -13.88448 -13.66563 -13.44672 -13.33832 -13.30830 -13.20536 -13.05180 -12.98514 -12.93096 -12.73693 -12.60647 -12.49484 -12.41733 -12.25561 -12.24787 -12.11112 -11.79044 -11.31783 -11.22352 -10.84569 -10.60136 -10.11329 -9.92415 -9.47423 -9.17966 -8.21284 -6.35818 0.93757 1.44134 1.46373 1.52841 1.59319 1.67918 1.77802 2.30633 2.44194 3.03657 3.43677 3.72414 3.73553 3.90742 3.93437 3.95333 4.05471 4.10256 4.15273 4.21837 4.34865 4.45070 4.48732 4.54218 4.61067 4.63334 4.64398 4.66147 4.72771 4.76579 4.77811 4.78200 4.82945 4.95580 4.97057 5.06306 5.08119 5.18523 5.21327 5.25455 5.34803 5.38112 5.50069 5.59740 5.79550 5.80960 6.13026 6.24625 6.66489 6.76624 6.83509 7.31480 7.34644 7.43815 8.84135 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.002479 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.468591 B =11293.689556 C =11572.977328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.069 3.931 3 N -0.325 5.325 4 N -0.367 5.367 5 C 0.145 3.855 6 C -0.151 4.151 7 C -0.156 4.156 8 C 0.093 3.907 9 C -0.092 4.092 10 C -0.241 4.241 11 C -0.041 4.041 12 C 0.520 3.480 13 O -0.591 6.591 14 N -0.613 5.613 15 C 0.105 3.895 16 C -0.126 4.126 17 C 0.234 3.766 18 O -0.593 6.593 19 C -0.562 4.562 20 H 0.051 0.949 21 C 0.038 3.962 22 N -0.904 5.904 23 Si 0.957 3.043 24 H -0.281 1.281 25 H -0.279 1.279 26 H -0.270 1.270 27 C 0.127 3.873 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.377 0.623 48 H 0.271 0.729 49 H 0.069 0.931 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.768 13.509 -13.011 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 N -0.148 5.148 4 N -0.150 5.150 5 C 0.045 3.955 6 C -0.209 4.209 7 C -0.213 4.213 8 C -0.036 4.036 9 C -0.150 4.150 10 C -0.252 4.252 11 C -0.081 4.081 12 C 0.311 3.689 13 O -0.472 6.472 14 N -0.345 5.345 15 C -0.017 4.017 16 C -0.165 4.165 17 C 0.194 3.806 18 O -0.401 6.401 19 C -0.601 4.601 20 H 0.069 0.931 21 C -0.163 4.163 22 N -0.543 5.543 23 Si 0.782 3.218 24 H -0.207 1.207 25 H -0.204 1.204 26 H -0.196 1.196 27 C 0.004 3.996 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.141 0.859 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.226 0.774 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.280 15.801 -12.481 24.120 hybrid contribution -0.754 -2.177 1.169 2.583 sum 12.526 13.624 -11.312 21.690 Atomic orbital electron populations 1.20173 0.86147 1.02780 1.03723 1.22485 0.97616 0.90660 0.98884 1.77101 0.87439 1.23042 1.27177 1.48831 1.05241 1.04075 1.56871 1.21667 0.84009 0.92113 0.97736 1.22065 1.03684 0.99653 0.95450 1.22093 1.03715 0.99737 0.95804 1.21281 0.97532 0.85149 0.99595 1.20588 0.92294 0.98479 1.03607 1.19272 0.92053 0.94912 1.19012 1.19849 1.04774 0.92118 0.91380 1.21121 0.75725 0.79235 0.92836 1.90636 1.53097 1.55418 1.48020 1.48728 1.65495 1.11918 1.08400 1.22241 1.00914 0.88055 0.90447 1.22945 1.01007 0.95251 0.97282 1.19806 0.79637 0.88431 0.92751 1.86131 1.18841 1.41801 1.93364 1.21639 1.26861 1.02064 1.09504 0.93063 1.25568 0.94011 0.99474 0.97277 1.69766 1.26857 1.27617 1.30069 0.85639 0.78318 0.78445 0.79349 1.20670 1.20370 1.19553 1.22099 0.97951 0.94573 0.85012 0.88417 0.91649 0.91232 0.85757 0.87952 0.92271 0.93114 0.93822 0.87669 0.93171 0.90814 0.88341 0.88521 0.87033 0.85896 0.90685 0.88897 0.90649 0.91958 0.77361 0.91975 0.91283 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 10.12 71.24 0.72 -1.10 16 2 C 0.07 2.14 7.22 43.10 0.31 2.45 16 3 N -0.32 -10.11 12.43 -47.38 -0.59 -10.70 16 4 N -0.37 -9.43 3.28 -314.29 -1.03 -10.46 16 5 C 0.14 2.47 3.64 44.99 0.16 2.63 16 6 C -0.15 -2.07 9.45 71.98 0.68 -1.39 16 7 C -0.16 -2.69 9.45 71.98 0.68 -2.01 16 8 C 0.09 2.38 6.93 41.41 0.29 2.67 16 9 C -0.09 -1.59 9.74 71.24 0.69 -0.89 16 10 C -0.24 -7.04 4.59 -20.15 -0.09 -7.13 16 11 C -0.04 -1.08 4.84 29.10 0.14 -0.94 16 12 C 0.52 19.23 7.84 87.66 0.69 19.92 16 13 O -0.59 -27.09 16.29 -3.05 -0.05 -27.14 16 14 N -0.61 -23.39 3.32 -811.36 -2.70 -26.09 16 15 C 0.11 3.40 6.49 86.73 0.56 3.97 16 16 C -0.13 -5.16 5.37 31.78 0.17 -4.99 16 17 C 0.23 11.27 0.87 -10.07 -0.01 11.26 16 18 O -0.59 -30.43 13.17 -148.98 -1.96 -32.39 16 19 C -0.56 -29.50 8.27 25.60 0.21 -29.29 16 20 H 0.05 2.73 7.79 -2.91 -0.02 2.70 16 21 C 0.04 1.95 5.29 84.66 0.45 2.39 16 22 N -0.90 -45.61 10.76 21.45 0.23 -45.38 16 23 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C 0.13 5.79 6.10 86.93 0.53 6.32 16 28 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.84 7.95 -2.39 -0.02 1.82 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.12 1.44 6.67 -2.38 -0.02 1.42 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.42 7.14 -2.39 -0.02 1.41 16 40 H 0.10 1.07 7.09 -2.39 -0.02 1.05 16 41 H 0.11 2.61 7.95 -2.39 -0.02 2.60 16 42 H 0.12 2.45 7.14 -2.38 -0.02 2.43 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 3.23 7.55 -2.39 -0.02 3.21 16 46 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 47 H 0.38 19.20 7.57 -74.06 -0.56 18.64 16 48 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 49 H 0.07 3.09 8.03 -2.39 -0.02 3.07 16 50 H 0.04 1.92 8.03 -2.39 -0.02 1.91 16 Total: -1.00 -70.56 405.13 2.49 -68.07 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.37 Total: 37.25 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 6.19 Total: 3.86 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -4.09 Total: -92.63 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -2.01 Total: -59.53 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -70.56 2.49 -68.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.221 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds