Wall clock time and date at job start Tue Mar 31 2020 20:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30842 * 125.89379 * 2 1 4 4 N 1.40088 * 108.20064 * 180.25273 * 3 2 1 5 5 C 1.46494 * 126.03750 * 179.69367 * 4 3 2 6 6 C 1.53000 * 109.47485 * 300.02620 * 5 4 3 7 7 C 1.52999 * 109.47287 * 60.02376 * 5 4 3 8 8 C 1.34953 * 107.92391 * 359.71362 * 4 3 2 9 9 C 1.50703 * 126.12121 * 179.97438 * 8 4 3 10 10 C 1.35314 * 107.74820 * 0.02562 * 8 4 3 11 11 C 1.50692 * 126.04011 * 179.97438 * 10 8 4 12 12 C 1.50706 * 109.46855 * 90.00088 * 11 10 8 13 13 O 1.21281 * 120.00160 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99667 * 180.02562 * 12 11 10 15 15 C 1.47425 * 125.65136 * 359.95409 * 14 12 11 16 16 C 1.54915 * 104.83334 * 204.16738 * 15 14 12 17 17 C 1.55165 * 101.57980 * 322.99105 * 16 15 14 18 18 O 1.42893 * 110.71912 * 277.13741 * 17 16 15 19 19 C 1.50700 * 110.71840 * 153.86731 * 17 16 15 20 20 H 1.08005 * 119.99597 * 246.47621 * 19 17 16 21 21 C 1.37868 * 120.00222 * 66.47683 * 19 17 16 22 22 N 1.31519 * 120.00187 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00056 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47056 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47479 * 119.99918 * 23 21 19 26 26 H 1.48502 * 109.46831 * 239.99660 * 23 21 19 27 27 C 1.47022 * 125.64528 * 180.02562 * 14 12 11 28 28 H 1.08998 * 109.47665 * 270.21897 * 1 2 3 29 29 H 1.09001 * 109.47174 * 30.22405 * 1 2 3 30 30 H 1.09005 * 109.46863 * 150.21537 * 1 2 3 31 31 H 1.08999 * 109.47258 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47299 * 59.99523 * 6 5 4 33 33 H 1.08997 * 109.47598 * 179.97438 * 6 5 4 34 34 H 1.09009 * 109.46783 * 300.00274 * 6 5 4 35 35 H 1.08998 * 109.47595 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47166 * 300.00295 * 7 5 4 37 37 H 1.09005 * 109.47262 * 59.99798 * 7 5 4 38 38 H 1.08997 * 109.47644 * 270.02227 * 9 8 4 39 39 H 1.08997 * 109.47271 * 30.03528 * 9 8 4 40 40 H 1.09011 * 109.46386 * 150.02785 * 9 8 4 41 41 H 1.08997 * 109.47276 * 330.00571 * 11 10 8 42 42 H 1.09002 * 109.47562 * 209.99886 * 11 10 8 43 43 H 1.08997 * 110.36855 * 323.00479 * 15 14 12 44 44 H 1.08999 * 110.36490 * 85.21794 * 15 14 12 45 45 H 1.08995 * 111.00392 * 204.91661 * 16 15 14 46 46 H 1.09001 * 111.00387 * 81.05917 * 16 15 14 47 47 H 0.96699 * 114.00392 * 293.52799 * 18 17 16 48 48 H 0.96995 * 120.00067 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.88723 * 59.48678 * 27 14 12 50 50 H 1.08998 * 109.88661 * 298.31659 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0059 5 6 4.7898 1.5009 -0.0142 6 6 4.7675 2.3814 -1.2652 7 6 4.7811 2.3868 1.2332 8 6 3.6141 -0.7153 -0.0030 9 6 4.8350 -1.5988 -0.0078 10 6 2.3271 -1.1330 0.0039 11 6 1.8599 -2.5657 0.0087 12 6 1.7110 -3.0407 1.4311 13 8 1.9602 -2.2899 2.3504 14 7 1.3019 -4.3002 1.6815 15 6 0.9669 -5.3132 0.6641 16 6 0.0061 -6.2937 1.3820 17 6 0.6137 -6.3363 2.8091 18 8 1.7010 -7.2617 2.8682 19 6 -0.4410 -6.6850 3.8274 20 1 -0.7419 -5.9553 4.5647 21 6 -1.0219 -7.9353 3.8180 22 7 -0.6558 -8.8237 2.9199 23 14 -2.3298 -8.3671 5.0798 24 1 -2.5608 -7.2025 5.9717 25 1 -3.5939 -8.7160 4.3831 26 1 -1.8740 -9.5265 5.8882 27 6 1.1143 -4.8911 3.0147 28 1 -0.3634 0.0039 1.0276 29 1 -0.3633 0.8880 -0.5173 30 1 -0.3633 -0.8920 -0.5105 31 1 5.6906 0.8873 -0.0178 32 1 3.8666 2.9950 -1.2617 33 1 5.6460 3.0266 -1.2712 34 1 4.7737 1.7502 -2.1539 35 1 5.6601 3.0313 1.2273 36 1 3.8802 3.0004 1.2368 37 1 4.7970 1.7595 2.1245 38 1 5.1240 -1.8137 -1.0365 39 1 5.6538 -1.0899 0.5009 40 1 4.6102 -2.5319 0.5090 41 1 2.5910 -3.1879 -0.5075 42 1 0.8987 -2.6361 -0.5004 43 1 0.4679 -4.8470 -0.1854 44 1 1.8669 -5.8332 0.3360 45 1 0.0334 -7.2787 0.9162 46 1 -1.0103 -5.9005 1.4018 47 1 1.4394 -8.1844 2.7448 48 1 -1.0642 -9.7034 2.9135 49 1 0.3741 -4.3182 3.5733 50 1 2.0621 -4.9004 3.5528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:48 Heat of formation + Delta-G solvation = -22.820194 kcal Electronic energy + Delta-G solvation = -29878.564236 eV Core-core repulsion = 25906.954038 eV Total energy + Delta-G solvation = -3971.610197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.41439 -39.28298 -37.21068 -35.99702 -34.26425 -33.00347 -32.16786 -32.13589 -29.93947 -29.06425 -28.21087 -27.56824 -27.32799 -26.10853 -24.67599 -22.33852 -21.87012 -20.13983 -19.42901 -19.00604 -18.41370 -17.27618 -16.70934 -16.52742 -15.35205 -15.34200 -14.97856 -14.96070 -14.59371 -14.13906 -13.95972 -13.67752 -13.52432 -13.31206 -13.24841 -13.18186 -12.91415 -12.60955 -12.54743 -12.25242 -12.18700 -12.11694 -11.98315 -11.82966 -11.66225 -11.47600 -11.41608 -11.37395 -11.33700 -11.27596 -10.90096 -10.58773 -10.46731 -10.29785 -10.11443 -9.42349 -9.27009 -8.92500 -8.67710 -8.20675 -8.12472 -7.92656 -6.30283 -4.37021 1.93835 2.46175 2.80411 3.18491 3.20356 3.27724 3.32784 3.75481 4.23106 4.26832 4.59310 4.63789 4.70948 4.84841 4.96404 4.97198 5.14980 5.22312 5.24422 5.29662 5.37256 5.38621 5.42931 5.46829 5.51169 5.58566 5.66967 5.73950 5.77438 5.81831 5.85537 5.90499 5.95826 5.98222 6.04571 6.18370 6.27828 6.29397 6.49309 6.74048 6.82228 6.93700 7.02231 7.13946 7.31335 7.35018 7.73512 7.87076 8.01050 8.21853 8.65292 8.78530 9.31500 9.45399 10.77571 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002488 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.181051 B =11250.879221 C =11483.274732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.089 3.911 3 N -0.297 5.297 4 N -0.367 5.367 5 C 0.158 3.842 6 C -0.159 4.159 7 C -0.161 4.161 8 C 0.096 3.904 9 C -0.093 4.093 10 C -0.211 4.211 11 C -0.055 4.055 12 C 0.521 3.479 13 O -0.546 6.546 14 N -0.612 5.612 15 C 0.096 3.904 16 C -0.137 4.137 17 C 0.247 3.753 18 O -0.587 6.587 19 C -0.532 4.532 20 H 0.065 0.935 21 C 0.071 3.929 22 N -0.898 5.898 23 Si 0.903 3.097 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.124 3.876 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.386 0.614 48 H 0.268 0.732 49 H 0.069 0.931 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 14.791 -11.430 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 N -0.119 5.119 4 N -0.150 5.150 5 C 0.056 3.944 6 C -0.216 4.216 7 C -0.219 4.219 8 C -0.031 4.031 9 C -0.151 4.151 10 C -0.223 4.223 11 C -0.096 4.096 12 C 0.309 3.691 13 O -0.424 6.424 14 N -0.346 5.346 15 C -0.026 4.026 16 C -0.176 4.176 17 C 0.207 3.793 18 O -0.397 6.397 19 C -0.571 4.571 20 H 0.083 0.917 21 C -0.131 4.131 22 N -0.539 5.539 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.002 3.998 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.238 0.762 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.455 17.016 -10.908 22.314 hybrid contribution -1.050 -1.819 0.558 2.173 sum 8.404 15.198 -10.349 20.217 Atomic orbital electron populations 1.20162 0.87040 1.02754 1.03159 1.22072 0.96612 0.90242 0.98764 1.77173 0.86130 1.22387 1.26212 1.48445 1.05124 1.03545 1.57871 1.21221 0.84421 0.91727 0.97052 1.22116 1.03281 0.99870 0.96379 1.22127 1.03182 0.99912 0.96670 1.20707 0.96669 0.84591 1.01151 1.20456 0.93053 0.98728 1.02865 1.19023 0.91283 0.94694 1.17281 1.19862 1.02960 0.92187 0.94592 1.20261 0.77275 0.80284 0.91295 1.90660 1.50911 1.54125 1.46725 1.48684 1.65436 1.11120 1.09312 1.22466 0.99077 0.90046 0.91042 1.23311 0.97383 0.98137 0.98765 1.19444 0.84313 0.84195 0.91379 1.86093 1.36329 1.21569 1.95735 1.21596 1.20635 0.99267 1.15576 0.91697 1.24988 0.96586 0.95999 0.95513 1.69582 1.43648 1.06082 1.34541 0.86359 0.80916 0.78546 0.81157 1.19584 1.20815 1.20770 1.22028 1.00410 0.94322 0.83057 0.90414 0.91197 0.90642 0.88395 0.91118 0.90930 0.92196 0.90948 0.91107 0.91947 0.90334 0.91292 0.89584 0.89007 0.88646 0.92174 0.92022 0.89732 0.91479 0.76241 0.92177 0.91257 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.26 36.00 0.37 -0.53 16 2 C 0.09 1.35 7.22 -82.41 -0.59 0.76 16 3 N -0.30 -4.54 12.43 33.67 0.42 -4.13 16 4 N -0.37 -4.88 3.28 -50.70 -0.17 -5.04 16 5 C 0.16 1.49 3.64 -67.93 -0.25 1.25 16 6 C -0.16 -1.25 9.45 37.16 0.35 -0.90 16 7 C -0.16 -1.47 9.45 37.16 0.35 -1.12 16 8 C 0.10 1.31 6.93 -82.26 -0.57 0.74 16 9 C -0.09 -0.96 9.55 36.01 0.34 -0.62 16 10 C -0.21 -3.17 4.59 -105.06 -0.48 -3.65 16 11 C -0.05 -0.78 4.61 -29.04 -0.13 -0.91 16 12 C 0.52 9.72 7.84 -10.98 -0.09 9.63 16 13 O -0.55 -12.20 16.36 5.56 0.09 -12.11 16 14 N -0.61 -11.92 3.33 -170.52 -0.57 -12.49 16 15 C 0.10 1.68 6.68 -2.53 -0.02 1.66 16 16 C -0.14 -2.88 5.67 -24.57 -0.14 -3.02 16 17 C 0.25 5.90 0.86 -89.93 -0.08 5.82 16 18 O -0.59 -14.68 13.09 -35.23 -0.46 -15.14 16 19 C -0.53 -13.83 8.21 -34.44 -0.28 -14.11 16 20 H 0.06 1.71 7.53 -52.48 -0.40 1.31 16 21 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 22 N -0.90 -22.79 10.70 55.43 0.59 -22.20 16 23 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.12 2.80 6.22 -3.06 -0.02 2.78 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.81 7.25 -51.93 -0.38 0.44 16 31 H 0.10 0.74 6.67 -51.93 -0.35 0.39 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.61 7.10 -51.93 -0.37 0.24 16 40 H 0.09 0.99 7.78 -51.92 -0.40 0.59 16 41 H 0.09 1.11 7.77 -51.93 -0.40 0.71 16 42 H 0.10 1.18 6.95 -51.93 -0.36 0.82 16 43 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 1.84 7.77 -51.93 -0.40 1.44 16 46 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 47 H 0.39 9.72 6.99 45.56 0.32 10.04 16 48 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 49 H 0.07 1.61 7.63 -51.93 -0.40 1.22 16 50 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -31.32 403.28 -8.09 -39.41 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.72 Total: 10.99 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.33 Total: -0.50 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.28 Total: -43.85 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.37 Total: -27.25 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.32 -8.09 -39.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.590 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds