Wall clock time and date at job start Tue Mar 31 2020 20:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30842 * 125.89379 * 2 1 4 4 N 1.40088 * 108.20064 * 180.25273 * 3 2 1 5 5 C 1.46494 * 126.03750 * 179.69367 * 4 3 2 6 6 C 1.53000 * 109.47485 * 300.02620 * 5 4 3 7 7 C 1.52999 * 109.47287 * 60.02376 * 5 4 3 8 8 C 1.34953 * 107.92391 * 359.71362 * 4 3 2 9 9 C 1.50703 * 126.12121 * 179.97438 * 8 4 3 10 10 C 1.35314 * 107.74820 * 0.02562 * 8 4 3 11 11 C 1.50692 * 126.04011 * 179.97438 * 10 8 4 12 12 C 1.50706 * 109.46855 * 90.00088 * 11 10 8 13 13 O 1.21281 * 120.00160 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99667 * 180.02562 * 12 11 10 15 15 C 1.47425 * 125.65136 * 359.95409 * 14 12 11 16 16 C 1.54915 * 104.83334 * 204.16738 * 15 14 12 17 17 C 1.55165 * 101.57980 * 322.99105 * 16 15 14 18 18 O 1.42893 * 110.71912 * 277.13741 * 17 16 15 19 19 C 1.50700 * 110.71840 * 153.86731 * 17 16 15 20 20 H 1.08005 * 119.99597 * 246.47621 * 19 17 16 21 21 C 1.37868 * 120.00222 * 66.47683 * 19 17 16 22 22 N 1.31519 * 120.00187 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00056 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47056 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47479 * 119.99918 * 23 21 19 26 26 H 1.48502 * 109.46831 * 239.99660 * 23 21 19 27 27 C 1.47022 * 125.64528 * 180.02562 * 14 12 11 28 28 H 1.08998 * 109.47665 * 270.21897 * 1 2 3 29 29 H 1.09001 * 109.47174 * 30.22405 * 1 2 3 30 30 H 1.09005 * 109.46863 * 150.21537 * 1 2 3 31 31 H 1.08999 * 109.47258 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47299 * 59.99523 * 6 5 4 33 33 H 1.08997 * 109.47598 * 179.97438 * 6 5 4 34 34 H 1.09009 * 109.46783 * 300.00274 * 6 5 4 35 35 H 1.08998 * 109.47595 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47166 * 300.00295 * 7 5 4 37 37 H 1.09005 * 109.47262 * 59.99798 * 7 5 4 38 38 H 1.08997 * 109.47644 * 270.02227 * 9 8 4 39 39 H 1.08997 * 109.47271 * 30.03528 * 9 8 4 40 40 H 1.09011 * 109.46386 * 150.02785 * 9 8 4 41 41 H 1.08997 * 109.47276 * 330.00571 * 11 10 8 42 42 H 1.09002 * 109.47562 * 209.99886 * 11 10 8 43 43 H 1.08997 * 110.36855 * 323.00479 * 15 14 12 44 44 H 1.08999 * 110.36490 * 85.21794 * 15 14 12 45 45 H 1.08995 * 111.00392 * 204.91661 * 16 15 14 46 46 H 1.09001 * 111.00387 * 81.05917 * 16 15 14 47 47 H 0.96699 * 114.00392 * 293.52799 * 18 17 16 48 48 H 0.96995 * 120.00067 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.88723 * 59.48678 * 27 14 12 50 50 H 1.08998 * 109.88661 * 298.31659 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0059 5 6 4.7898 1.5009 -0.0142 6 6 4.7675 2.3814 -1.2652 7 6 4.7811 2.3868 1.2332 8 6 3.6141 -0.7153 -0.0030 9 6 4.8350 -1.5988 -0.0078 10 6 2.3271 -1.1330 0.0039 11 6 1.8599 -2.5657 0.0087 12 6 1.7110 -3.0407 1.4311 13 8 1.9602 -2.2899 2.3504 14 7 1.3019 -4.3002 1.6815 15 6 0.9669 -5.3132 0.6641 16 6 0.0061 -6.2937 1.3820 17 6 0.6137 -6.3363 2.8091 18 8 1.7010 -7.2617 2.8682 19 6 -0.4410 -6.6850 3.8274 20 1 -0.7419 -5.9553 4.5647 21 6 -1.0219 -7.9353 3.8180 22 7 -0.6558 -8.8237 2.9199 23 14 -2.3298 -8.3671 5.0798 24 1 -2.5608 -7.2025 5.9717 25 1 -3.5939 -8.7160 4.3831 26 1 -1.8740 -9.5265 5.8882 27 6 1.1143 -4.8911 3.0147 28 1 -0.3634 0.0039 1.0276 29 1 -0.3633 0.8880 -0.5173 30 1 -0.3633 -0.8920 -0.5105 31 1 5.6906 0.8873 -0.0178 32 1 3.8666 2.9950 -1.2617 33 1 5.6460 3.0266 -1.2712 34 1 4.7737 1.7502 -2.1539 35 1 5.6601 3.0313 1.2273 36 1 3.8802 3.0004 1.2368 37 1 4.7970 1.7595 2.1245 38 1 5.1240 -1.8137 -1.0365 39 1 5.6538 -1.0899 0.5009 40 1 4.6102 -2.5319 0.5090 41 1 2.5910 -3.1879 -0.5075 42 1 0.8987 -2.6361 -0.5004 43 1 0.4679 -4.8470 -0.1854 44 1 1.8669 -5.8332 0.3360 45 1 0.0334 -7.2787 0.9162 46 1 -1.0103 -5.9005 1.4018 47 1 1.4394 -8.1844 2.7448 48 1 -1.0642 -9.7034 2.9135 49 1 0.3741 -4.3182 3.5733 50 1 2.0621 -4.9004 3.5528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:47 Heat of formation + Delta-G solvation = -43.062289 kcal Electronic energy + Delta-G solvation = -29879.441999 eV Core-core repulsion = 25906.954038 eV Total energy + Delta-G solvation = -3972.487961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.42400 -40.84302 -38.89071 -36.84613 -36.03828 -34.13429 -33.99349 -33.17561 -31.48797 -30.33707 -29.73816 -28.29749 -28.23560 -27.45519 -26.25251 -23.87477 -22.74458 -21.67001 -20.87226 -20.00619 -19.73548 -19.17641 -18.01830 -17.61035 -16.95389 -16.80861 -16.51048 -16.22899 -15.87332 -15.46723 -15.23443 -14.86887 -14.78292 -14.40501 -14.29267 -14.14179 -14.03565 -13.80851 -13.75203 -13.35042 -13.31882 -13.28965 -13.21291 -13.10711 -12.99041 -12.93137 -12.79811 -12.64464 -12.49902 -12.36349 -12.26319 -12.25542 -12.11011 -11.95188 -11.32032 -11.25000 -10.85711 -10.60924 -10.10492 -9.92529 -9.53473 -9.18053 -8.24873 -6.38276 0.93401 1.40192 1.44804 1.54448 1.57918 1.68845 1.75497 2.27817 2.42284 3.00657 3.44174 3.72372 3.75222 3.91141 3.93485 3.96060 4.05417 4.06723 4.13282 4.26773 4.28526 4.41687 4.48701 4.56895 4.62353 4.63512 4.64046 4.64901 4.67925 4.75062 4.77401 4.79194 4.83457 4.96544 4.97932 5.06233 5.08991 5.18031 5.20979 5.25039 5.32829 5.34899 5.50457 5.56840 5.78744 5.80871 6.08395 6.23626 6.62988 6.74625 6.83788 7.29098 7.33000 7.47350 8.81601 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002488 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.181051 B =11250.879221 C =11483.274732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.070 3.930 3 N -0.325 5.325 4 N -0.367 5.367 5 C 0.145 3.855 6 C -0.150 4.150 7 C -0.156 4.156 8 C 0.091 3.909 9 C -0.091 4.091 10 C -0.241 4.241 11 C -0.041 4.041 12 C 0.520 3.480 13 O -0.589 6.589 14 N -0.614 5.614 15 C 0.105 3.895 16 C -0.129 4.129 17 C 0.235 3.765 18 O -0.594 6.594 19 C -0.561 4.561 20 H 0.049 0.951 21 C 0.038 3.962 22 N -0.906 5.906 23 Si 0.958 3.042 24 H -0.278 1.278 25 H -0.274 1.274 26 H -0.278 1.278 27 C 0.131 3.869 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.382 0.618 48 H 0.273 0.727 49 H 0.052 0.948 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 14.945 -13.544 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 N -0.148 5.148 4 N -0.150 5.150 5 C 0.044 3.956 6 C -0.208 4.208 7 C -0.214 4.214 8 C -0.037 4.037 9 C -0.149 4.149 10 C -0.252 4.252 11 C -0.082 4.082 12 C 0.311 3.689 13 O -0.470 6.470 14 N -0.347 5.347 15 C -0.017 4.017 16 C -0.168 4.168 17 C 0.195 3.805 18 O -0.404 6.404 19 C -0.599 4.599 20 H 0.067 0.933 21 C -0.164 4.164 22 N -0.546 5.546 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.199 1.199 26 H -0.204 1.204 27 C 0.007 3.993 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.234 0.766 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.369 17.178 -13.053 23.937 hybrid contribution -1.261 -1.820 1.275 2.555 sum 9.108 15.359 -11.778 21.391 Atomic orbital electron populations 1.20214 0.85903 1.04236 1.02612 1.22509 0.97729 0.90504 0.98813 1.77105 0.87372 1.23128 1.27173 1.48817 1.05292 1.04014 1.56856 1.21662 0.84011 0.92115 0.97768 1.22058 1.03698 0.99632 0.95383 1.22099 1.03743 0.99732 0.95815 1.21276 0.97561 0.85160 0.99688 1.20560 0.92091 0.97527 1.04721 1.19258 0.92000 0.94960 1.18996 1.19863 1.05036 0.92110 0.91146 1.21173 0.75643 0.79172 0.92934 1.90639 1.52629 1.55128 1.48623 1.48753 1.65738 1.11929 1.08255 1.22525 0.99031 0.89020 0.91077 1.23102 0.97669 0.98844 0.97162 1.19582 0.83848 0.84202 0.92882 1.86077 1.36924 1.21503 1.95938 1.21776 1.22029 0.99694 1.16432 0.93317 1.25562 0.98043 0.95771 0.96989 1.69625 1.43889 1.06209 1.34897 0.85512 0.79076 0.77876 0.79152 1.20291 1.19899 1.20400 1.21711 0.98658 0.93987 0.84908 0.91838 0.90007 0.88930 0.85880 0.93049 0.87993 0.92273 0.87695 0.93089 0.93859 0.87454 0.89787 0.90845 0.86270 0.86284 0.87773 0.90773 0.90478 0.92282 0.76623 0.91745 0.92993 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.73 10.26 71.24 0.73 -1.00 16 2 C 0.07 2.09 7.22 43.10 0.31 2.40 16 3 N -0.33 -9.92 12.43 -47.39 -0.59 -10.51 16 4 N -0.37 -9.37 3.28 -314.31 -1.03 -10.40 16 5 C 0.14 2.47 3.64 44.99 0.16 2.64 16 6 C -0.15 -2.05 9.45 71.98 0.68 -1.37 16 7 C -0.16 -2.69 9.45 71.98 0.68 -2.01 16 8 C 0.09 2.36 6.93 41.40 0.29 2.64 16 9 C -0.09 -1.65 9.55 71.24 0.68 -0.97 16 10 C -0.24 -6.89 4.59 -20.15 -0.09 -6.98 16 11 C -0.04 -1.06 4.61 29.10 0.13 -0.93 16 12 C 0.52 18.96 7.84 87.66 0.69 19.65 16 13 O -0.59 -26.74 16.36 -3.03 -0.05 -26.79 16 14 N -0.61 -23.42 3.33 -811.78 -2.70 -26.12 16 15 C 0.11 3.41 6.68 86.86 0.58 3.99 16 16 C -0.13 -5.32 5.67 31.99 0.18 -5.14 16 17 C 0.23 11.38 0.86 -10.35 -0.01 11.37 16 18 O -0.59 -30.06 13.09 -148.98 -1.95 -32.01 16 19 C -0.56 -29.78 8.21 25.60 0.21 -29.57 16 20 H 0.05 2.66 7.53 -2.91 -0.02 2.64 16 21 C 0.04 1.91 5.28 84.65 0.45 2.36 16 22 N -0.91 -45.69 10.70 21.44 0.23 -45.46 16 23 Si 0.96 41.33 29.54 68.60 2.03 43.36 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.13 6.07 6.22 86.73 0.54 6.61 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.85 7.25 -2.38 -0.02 1.83 16 31 H 0.12 1.47 6.67 -2.39 -0.02 1.45 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.25 7.10 -2.39 -0.02 1.23 16 40 H 0.07 1.55 7.78 -2.38 -0.02 1.53 16 41 H 0.12 2.44 7.77 -2.39 -0.02 2.42 16 42 H 0.12 2.51 6.95 -2.39 -0.02 2.49 16 43 H 0.10 2.51 7.48 -2.39 -0.02 2.49 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 3.28 7.77 -2.39 -0.02 3.26 16 46 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 47 H 0.38 19.47 6.99 -74.06 -0.52 18.95 16 48 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 49 H 0.05 2.54 7.63 -2.39 -0.02 2.53 16 50 H 0.04 1.85 8.07 -2.39 -0.02 1.83 16 Total: -1.00 -70.31 403.28 2.57 -67.74 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.42 Total: 36.50 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.21 Total: 3.69 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -4.09 Total: -92.49 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -2.00 Total: -58.81 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -70.31 2.57 -67.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.676 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds