Wall clock time and date at job start Tue Mar 31 2020 20:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30845 * 125.89872 * 2 1 4 4 N 1.40080 * 108.20400 * 180.26012 * 3 2 1 5 5 C 1.46505 * 126.03948 * 179.74009 * 4 3 2 6 6 C 1.50697 * 109.46969 * 269.97574 * 5 4 3 7 7 H 1.07998 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99656 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00125 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.46780 * 90.00533 * 10 8 6 12 12 H 1.48500 * 109.47531 * 210.00236 * 10 8 6 13 13 H 1.48501 * 109.47272 * 330.00833 * 10 8 6 14 14 C 1.34952 * 107.92760 * 359.71987 * 4 3 2 15 15 C 1.50698 * 126.13076 * 179.97438 * 14 4 3 16 16 C 1.35317 * 107.74244 * 359.97438 * 14 4 3 17 17 C 1.50699 * 126.03640 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47400 * 90.00257 * 17 16 14 19 19 C 1.50699 * 109.47400 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99909 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00155 * 179.97438 * 19 18 17 22 22 C 1.46502 * 119.99824 * 174.05586 * 21 19 18 23 23 C 1.53001 * 115.55160 * 296.15900 * 22 21 19 24 24 H 1.08993 * 109.47104 * 39.20525 * 23 22 21 25 25 C 1.53001 * 109.46984 * 159.20770 * 23 22 21 26 26 O 1.42899 * 109.46896 * 279.20396 * 23 22 21 27 27 C 1.53008 * 117.51756 * 81.86082 * 22 21 19 28 28 C 1.53003 * 117.49441 * 150.48942 * 22 21 19 29 29 H 1.08999 * 109.47002 * 270.21037 * 1 2 3 30 30 H 1.09004 * 109.47369 * 30.20593 * 1 2 3 31 31 H 1.08990 * 109.47224 * 150.21069 * 1 2 3 32 32 H 1.09000 * 109.46639 * 29.97428 * 5 4 3 33 33 H 1.09000 * 109.47006 * 149.97515 * 5 4 3 34 34 H 0.97000 * 119.99595 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47142 * 270.02456 * 15 14 4 36 36 H 1.08997 * 109.46930 * 30.02209 * 15 14 4 37 37 H 1.08997 * 109.47225 * 150.02382 * 15 14 4 38 38 H 1.09000 * 109.47717 * 329.99444 * 17 16 14 39 39 H 1.09004 * 109.46788 * 209.99639 * 17 16 14 40 40 H 1.08998 * 109.47570 * 59.99444 * 18 17 16 41 41 H 1.09004 * 109.46645 * 299.99469 * 18 17 16 42 42 H 0.96991 * 119.99997 * 354.05482 * 21 19 18 43 43 H 1.08997 * 109.47310 * 58.87252 * 25 23 22 44 44 H 1.09010 * 109.46754 * 298.87116 * 25 23 22 45 45 H 1.08998 * 109.47251 * 178.87385 * 25 23 22 46 46 H 0.96703 * 114.00135 * 300.00041 * 26 23 22 47 47 H 1.08994 * 117.49787 * 214.96827 * 27 22 21 48 48 H 1.09005 * 117.49703 * 359.97438 * 27 22 21 49 49 H 1.08995 * 117.50053 * 359.97264 * 28 22 21 50 50 H 1.08999 * 117.49818 * 144.97858 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 6 4.7899 1.5008 -0.0135 6 6 5.1881 1.7951 -1.4368 7 1 4.6180 1.3786 -2.2541 8 6 6.2795 2.5969 -1.6955 9 7 6.9733 3.1044 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1862 -3.9263 12 1 8.2419 3.1710 -3.5295 13 1 6.3955 1.8158 -4.3262 14 6 3.6142 -0.7153 -0.0034 15 6 4.8350 -1.5989 -0.0085 16 6 2.3271 -1.1329 0.0047 17 6 1.8599 -2.5657 0.0107 18 6 1.7096 -3.0471 1.4552 19 6 1.2419 -4.4796 1.4612 20 8 1.0473 -5.0585 0.4133 21 7 1.0397 -5.1176 2.6311 22 6 0.4619 -6.4638 2.6409 23 6 -0.9681 -6.5722 2.1076 24 1 -1.0844 -5.9173 1.2442 25 6 -1.2496 -8.0178 1.6930 26 8 -1.8881 -6.1818 3.1290 27 6 1.4049 -7.6398 2.3781 28 6 0.8609 -7.3954 3.7872 29 1 -0.3633 0.0038 1.0277 30 1 -0.3634 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5105 32 1 4.5588 2.4343 0.4996 33 1 5.6118 0.9992 0.4975 34 1 7.7414 3.6682 -0.8824 35 1 5.1238 -1.8137 -1.0373 36 1 5.6538 -1.0902 0.5001 37 1 4.6102 -2.5320 0.5081 38 1 2.5905 -3.1883 -0.5057 39 1 0.8983 -2.6364 -0.4977 40 1 0.9790 -2.4245 1.9716 41 1 2.6713 -2.9764 1.9636 42 1 1.2767 -4.6855 3.4664 43 1 -1.1138 -8.6751 2.5518 44 1 -0.5608 -8.3090 0.8999 45 1 -2.2748 -8.0991 1.3318 46 1 -1.8403 -6.7227 3.9292 47 1 1.0065 -8.4905 1.8253 48 1 2.4554 -7.4118 2.1974 49 1 1.5536 -7.0069 4.5336 50 1 0.1046 -8.0853 4.1616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598385870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:46 Heat of formation + Delta-G solvation = -8.796359 kcal Electronic energy + Delta-G solvation = -28935.256987 eV Core-core repulsion = 24964.254909 eV Total energy + Delta-G solvation = -3971.002078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.68873 -40.39469 -38.54399 -36.02469 -34.37129 -33.44379 -33.05628 -32.47818 -30.49160 -30.19693 -28.94975 -26.89934 -25.86687 -24.91636 -23.69548 -23.00482 -22.25479 -20.79468 -19.87844 -18.79257 -18.62834 -17.72094 -17.13634 -16.69521 -16.09582 -15.79660 -15.47016 -15.32179 -15.11743 -14.59248 -14.36936 -14.04685 -13.63609 -13.51681 -13.01241 -12.96396 -12.88968 -12.59714 -12.52173 -12.48031 -12.29380 -12.11969 -11.84321 -11.78238 -11.71262 -11.63802 -11.32956 -11.25550 -11.15861 -10.97433 -10.90925 -10.79690 -10.70493 -10.53903 -10.25787 -9.83081 -9.71922 -9.58329 -9.13951 -8.64823 -8.16948 -7.46339 -6.26571 -4.33771 2.55958 2.73597 2.85880 3.20825 3.21447 3.27597 3.31996 3.40960 3.62639 4.00465 4.12494 4.29595 4.31444 4.51975 4.66881 4.82043 4.94160 5.07028 5.08056 5.13172 5.21499 5.28780 5.34835 5.36774 5.42443 5.43864 5.63562 5.66502 5.73248 5.76174 5.77691 5.84271 5.97049 5.98924 6.03374 6.07746 6.25660 6.28540 6.37753 6.47405 6.56351 6.86602 7.03272 7.12692 7.24360 7.33845 7.52879 7.66444 7.88468 8.06502 8.14966 8.67618 8.76066 9.32653 10.81007 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002160 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.417933 B =12961.069563 C =13430.029112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.093 3.907 15 C -0.086 4.086 16 C -0.269 4.269 17 C -0.010 4.010 18 C -0.133 4.133 19 C 0.518 3.482 20 O -0.533 6.533 21 N -0.704 5.704 22 C 0.072 3.928 23 C 0.132 3.868 24 H 0.113 0.887 25 C -0.184 4.184 26 O -0.555 6.555 27 C -0.169 4.169 28 C -0.174 4.174 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.402 0.598 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.370 0.630 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 -22.423 10.862 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.038 4.038 15 C -0.144 4.144 16 C -0.281 4.281 17 C -0.049 4.049 18 C -0.173 4.173 19 C 0.306 3.694 20 O -0.408 6.408 21 N -0.356 5.356 22 C -0.016 4.016 23 C 0.072 3.928 24 H 0.131 0.869 25 C -0.242 4.242 26 O -0.360 6.360 27 C -0.208 4.208 28 C -0.211 4.211 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.237 0.763 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.217 0.783 47 H 0.126 0.874 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.292 -20.823 9.691 26.050 hybrid contribution 0.885 -0.638 -0.030 1.092 sum -11.406 -21.461 9.661 26.154 Atomic orbital electron populations 1.20027 0.88035 1.02428 1.01846 1.21949 0.96121 0.90766 1.02493 1.77277 0.87484 1.22666 1.24692 1.49244 1.05786 1.04201 1.51243 1.19650 0.77978 0.89536 0.98909 1.21305 1.12995 1.31678 0.91336 0.91810 1.24931 0.95701 0.95025 0.98167 1.69920 1.18971 1.32973 1.31155 0.86354 0.77598 0.78997 0.83739 1.20297 1.20873 1.19659 1.20770 0.96106 0.85682 1.01257 1.20343 0.93766 0.97107 1.03165 1.19344 0.91338 0.95088 1.22327 1.19382 1.01597 0.90884 0.93003 1.21758 1.03025 0.91063 1.01467 1.21097 0.76293 0.89013 0.83039 1.90684 1.50686 1.68065 1.31401 1.45423 1.65159 1.15652 1.09355 1.21438 0.94390 0.81350 1.04438 1.21551 0.84085 0.96419 0.90698 0.86940 1.22580 1.03085 0.96143 1.02389 1.86663 1.60392 1.60799 1.28170 1.23504 0.99972 0.99506 0.97794 1.23299 1.03889 1.01663 0.92274 0.91583 0.91576 0.91228 0.93089 0.93121 0.92271 0.90456 0.90957 0.91150 0.91426 0.91260 0.88845 0.89158 0.76265 0.92189 0.90682 0.91303 0.78347 0.87400 0.88299 0.88000 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.26 36.00 0.37 -0.58 16 2 C 0.05 0.98 7.22 -82.40 -0.59 0.39 16 3 N -0.30 -6.90 12.58 33.67 0.42 -6.48 16 4 N -0.33 -7.64 3.60 -58.31 -0.21 -7.85 16 5 C 0.26 6.62 6.00 -5.19 -0.03 6.59 16 6 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 10 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.09 1.86 6.93 -82.26 -0.57 1.29 16 15 C -0.09 -1.41 9.72 36.00 0.35 -1.06 16 16 C -0.27 -4.83 5.35 -105.06 -0.56 -5.39 16 17 C -0.01 -0.14 4.41 -27.88 -0.12 -0.26 16 18 C -0.13 -1.53 5.68 -27.88 -0.16 -1.69 16 19 C 0.52 6.07 7.54 -10.99 -0.08 5.98 16 20 O -0.53 -7.98 15.05 5.55 0.08 -7.89 16 21 N -0.70 -6.22 5.46 -47.60 -0.26 -6.48 16 22 C 0.07 0.57 1.94 -131.81 -0.26 0.32 16 23 C 0.13 1.15 3.73 -26.73 -0.10 1.05 16 24 H 0.11 1.33 7.02 -51.93 -0.36 0.96 16 25 C -0.18 -1.19 8.18 37.16 0.30 -0.88 16 26 O -0.56 -4.75 13.34 -35.23 -0.47 -5.22 16 27 C -0.17 -1.22 9.57 -26.72 -0.26 -1.47 16 28 C -0.17 -0.89 9.46 -26.73 -0.25 -1.14 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.89 7.25 -51.93 -0.38 0.52 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 1.29 7.05 -51.93 -0.37 0.92 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.22 7.08 -51.93 -0.37 0.85 16 37 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 38 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 39 H 0.07 1.02 7.20 -51.93 -0.37 0.64 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.40 2.65 8.83 -40.82 -0.36 2.29 16 43 H 0.06 0.27 6.89 -51.93 -0.36 -0.09 16 44 H 0.07 0.51 6.83 -51.92 -0.35 0.15 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.37 1.69 8.68 45.56 0.40 2.08 16 47 H 0.11 0.68 5.90 -51.93 -0.31 0.37 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.34 7.24 -51.93 -0.38 -0.03 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -33.77 409.89 -8.29 -42.06 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.36 Total: 4.21 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.38 Total: -10.35 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.69 Total: -45.28 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.39 Total: -13.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.77 -8.29 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598385870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.264 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds