Wall clock time and date at job start Tue Mar 31 2020 20:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30845 * 125.89872 * 2 1 4 4 N 1.40080 * 108.20400 * 180.26012 * 3 2 1 5 5 C 1.46505 * 126.03948 * 179.74009 * 4 3 2 6 6 C 1.50697 * 109.46969 * 269.97574 * 5 4 3 7 7 H 1.07998 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99656 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00125 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99820 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.46780 * 90.00533 * 10 8 6 12 12 H 1.48500 * 109.47531 * 210.00236 * 10 8 6 13 13 H 1.48501 * 109.47272 * 330.00833 * 10 8 6 14 14 C 1.34952 * 107.92760 * 359.71987 * 4 3 2 15 15 C 1.50698 * 126.13076 * 179.97438 * 14 4 3 16 16 C 1.35317 * 107.74244 * 359.97438 * 14 4 3 17 17 C 1.50699 * 126.03640 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47400 * 90.00257 * 17 16 14 19 19 C 1.50699 * 109.47400 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99909 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00155 * 179.97438 * 19 18 17 22 22 C 1.46502 * 119.99824 * 174.05586 * 21 19 18 23 23 C 1.53001 * 115.55160 * 296.15900 * 22 21 19 24 24 H 1.08993 * 109.47104 * 39.20525 * 23 22 21 25 25 C 1.53001 * 109.46984 * 159.20770 * 23 22 21 26 26 O 1.42899 * 109.46896 * 279.20396 * 23 22 21 27 27 C 1.53008 * 117.51756 * 81.86082 * 22 21 19 28 28 C 1.53003 * 117.49441 * 150.48942 * 22 21 19 29 29 H 1.08999 * 109.47002 * 270.21037 * 1 2 3 30 30 H 1.09004 * 109.47369 * 30.20593 * 1 2 3 31 31 H 1.08990 * 109.47224 * 150.21069 * 1 2 3 32 32 H 1.09000 * 109.46639 * 29.97428 * 5 4 3 33 33 H 1.09000 * 109.47006 * 149.97515 * 5 4 3 34 34 H 0.97000 * 119.99595 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47142 * 270.02456 * 15 14 4 36 36 H 1.08997 * 109.46930 * 30.02209 * 15 14 4 37 37 H 1.08997 * 109.47225 * 150.02382 * 15 14 4 38 38 H 1.09000 * 109.47717 * 329.99444 * 17 16 14 39 39 H 1.09004 * 109.46788 * 209.99639 * 17 16 14 40 40 H 1.08998 * 109.47570 * 59.99444 * 18 17 16 41 41 H 1.09004 * 109.46645 * 299.99469 * 18 17 16 42 42 H 0.96991 * 119.99997 * 354.05482 * 21 19 18 43 43 H 1.08997 * 109.47310 * 58.87252 * 25 23 22 44 44 H 1.09010 * 109.46754 * 298.87116 * 25 23 22 45 45 H 1.08998 * 109.47251 * 178.87385 * 25 23 22 46 46 H 0.96703 * 114.00135 * 300.00041 * 26 23 22 47 47 H 1.08994 * 117.49787 * 214.96827 * 27 22 21 48 48 H 1.09005 * 117.49703 * 359.97438 * 27 22 21 49 49 H 1.08995 * 117.50053 * 359.97264 * 28 22 21 50 50 H 1.08999 * 117.49818 * 144.97858 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0060 5 6 4.7899 1.5008 -0.0135 6 6 5.1881 1.7951 -1.4368 7 1 4.6180 1.3786 -2.2541 8 6 6.2795 2.5969 -1.6955 9 7 6.9733 3.1044 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1862 -3.9263 12 1 8.2419 3.1710 -3.5295 13 1 6.3955 1.8158 -4.3262 14 6 3.6142 -0.7153 -0.0034 15 6 4.8350 -1.5989 -0.0085 16 6 2.3271 -1.1329 0.0047 17 6 1.8599 -2.5657 0.0107 18 6 1.7096 -3.0471 1.4552 19 6 1.2419 -4.4796 1.4612 20 8 1.0473 -5.0585 0.4133 21 7 1.0397 -5.1176 2.6311 22 6 0.4619 -6.4638 2.6409 23 6 -0.9681 -6.5722 2.1076 24 1 -1.0844 -5.9173 1.2442 25 6 -1.2496 -8.0178 1.6930 26 8 -1.8881 -6.1818 3.1290 27 6 1.4049 -7.6398 2.3781 28 6 0.8609 -7.3954 3.7872 29 1 -0.3633 0.0038 1.0277 30 1 -0.3634 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5105 32 1 4.5588 2.4343 0.4996 33 1 5.6118 0.9992 0.4975 34 1 7.7414 3.6682 -0.8824 35 1 5.1238 -1.8137 -1.0373 36 1 5.6538 -1.0902 0.5001 37 1 4.6102 -2.5320 0.5081 38 1 2.5905 -3.1883 -0.5057 39 1 0.8983 -2.6364 -0.4977 40 1 0.9790 -2.4245 1.9716 41 1 2.6713 -2.9764 1.9636 42 1 1.2767 -4.6855 3.4664 43 1 -1.1138 -8.6751 2.5518 44 1 -0.5608 -8.3090 0.8999 45 1 -2.2748 -8.0991 1.3318 46 1 -1.8403 -6.7227 3.9292 47 1 1.0065 -8.4905 1.8253 48 1 2.4554 -7.4118 2.1974 49 1 1.5536 -7.0069 4.5336 50 1 0.1046 -8.0853 4.1616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598385870.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:45 Heat of formation + Delta-G solvation = -32.958551 kcal Electronic energy + Delta-G solvation = -28936.304738 eV Core-core repulsion = 24964.254909 eV Total energy + Delta-G solvation = -3972.049830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.16731 -41.20672 -39.32871 -36.64510 -36.08939 -34.84461 -34.21218 -33.92057 -31.65917 -31.01694 -30.49975 -28.20824 -27.62754 -25.86404 -24.91467 -23.86187 -23.45715 -21.64447 -20.57877 -20.31803 -20.14174 -18.83278 -18.36299 -18.02571 -17.29182 -16.72995 -16.43326 -16.28030 -16.13470 -15.91935 -15.81905 -15.14026 -14.77883 -14.66322 -14.43747 -14.19172 -14.06027 -13.87222 -13.57842 -13.43609 -13.35393 -13.25585 -13.18651 -13.02912 -12.86542 -12.76799 -12.64344 -12.59491 -12.39805 -12.23620 -12.16681 -11.87156 -11.76997 -11.71764 -11.56423 -11.16352 -11.09419 -10.76544 -10.68185 -9.84827 -9.84393 -9.03483 -8.36048 -6.53699 1.16353 1.34598 1.35907 1.47100 1.68798 1.86020 1.93771 2.20546 2.32150 2.70364 2.93364 3.44481 3.56695 3.78758 3.82370 3.90524 3.95277 4.04301 4.21206 4.22607 4.31031 4.32157 4.37767 4.56582 4.57567 4.64089 4.71510 4.72348 4.74456 4.83053 4.86112 4.88780 4.89431 4.95419 4.96096 5.02866 5.12548 5.13992 5.18157 5.26803 5.30603 5.43666 5.49118 5.55091 5.62303 5.79173 6.04183 6.31033 6.58754 6.61242 6.86317 7.10480 7.17581 7.33220 8.69995 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002160 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.417933 B =12961.069563 C =13430.029112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.268 1.268 13 H -0.270 1.270 14 C 0.079 3.921 15 C -0.082 4.082 16 C -0.258 4.258 17 C -0.002 4.002 18 C -0.125 4.125 19 C 0.519 3.481 20 O -0.571 6.571 21 N -0.692 5.692 22 C 0.048 3.952 23 C 0.136 3.864 24 H 0.074 0.926 25 C -0.178 4.178 26 O -0.571 6.571 27 C -0.180 4.180 28 C -0.142 4.142 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.048 0.952 34 H 0.274 0.726 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.414 0.586 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.388 0.612 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.113 0.887 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 -24.768 11.865 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.193 1.193 13 H -0.195 1.195 14 C -0.051 4.051 15 C -0.140 4.140 16 C -0.269 4.269 17 C -0.041 4.041 18 C -0.165 4.165 19 C 0.307 3.693 20 O -0.450 6.450 21 N -0.344 5.344 22 C -0.040 4.040 23 C 0.075 3.925 24 H 0.092 0.908 25 C -0.236 4.236 26 O -0.378 6.378 27 C -0.219 4.219 28 C -0.179 4.179 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.251 0.749 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.237 0.763 47 H 0.133 0.867 48 H 0.104 0.896 49 H 0.131 0.869 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.010 -23.197 10.753 28.687 hybrid contribution 0.998 0.026 -0.273 1.035 sum -12.013 -23.170 10.480 28.125 Atomic orbital electron populations 1.20199 0.84805 1.03411 1.03705 1.22769 0.98081 0.90258 1.00001 1.77211 0.87821 1.24973 1.27368 1.49012 1.05333 1.05179 1.54020 1.19132 0.79018 0.88729 0.97528 1.21421 1.13428 1.32430 0.91802 0.93549 1.25748 0.95398 0.94461 1.02337 1.70000 1.19311 1.33175 1.33109 0.85363 0.77903 0.78648 0.78624 1.20015 1.19287 1.19482 1.21455 0.98167 0.84686 1.00797 1.20435 0.92238 0.97878 1.03467 1.19710 0.90370 0.96499 1.20362 1.19339 1.01218 0.88399 0.95182 1.21627 1.04172 0.91263 0.99432 1.21034 0.75997 0.88964 0.83300 1.90674 1.52599 1.68844 1.32840 1.45297 1.63979 1.16115 1.08995 1.21563 0.94074 0.81044 1.07304 1.21339 0.84667 0.96719 0.89730 0.90816 1.22520 1.02672 0.95174 1.03224 1.86617 1.60449 1.61708 1.29075 1.23539 0.99060 0.99306 0.99948 1.23451 1.03603 0.99743 0.91142 0.89172 0.91635 0.89168 0.96295 0.93455 0.91711 0.90595 0.91782 0.87551 0.91757 0.91298 0.87726 0.87828 0.74864 0.89589 0.91298 0.91640 0.76267 0.86735 0.89609 0.86907 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.26 71.24 0.73 -1.01 16 2 C 0.05 2.05 7.22 43.10 0.31 2.36 16 3 N -0.35 -16.71 12.58 -47.39 -0.60 -17.31 16 4 N -0.36 -17.30 3.60 -338.39 -1.22 -18.52 16 5 C 0.28 14.90 6.00 85.63 0.51 15.41 16 6 C -0.55 -31.80 9.39 25.60 0.24 -31.56 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.02 1.20 5.46 84.65 0.46 1.66 16 9 N -0.92 -52.71 13.29 21.45 0.28 -52.43 16 10 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 C 0.08 3.16 6.93 41.40 0.29 3.45 16 15 C -0.08 -2.68 9.72 71.24 0.69 -1.98 16 16 C -0.26 -9.11 5.35 -20.15 -0.11 -9.21 16 17 C 0.00 -0.07 4.41 29.85 0.13 0.07 16 18 C -0.12 -2.63 5.68 29.85 0.17 -2.46 16 19 C 0.52 11.46 7.54 87.66 0.66 12.12 16 20 O -0.57 -16.85 15.05 -3.05 -0.05 -16.90 16 21 N -0.69 -10.92 5.46 -422.90 -2.31 -13.22 16 22 C 0.05 0.66 1.94 3.61 0.01 0.67 16 23 C 0.14 2.18 3.73 30.59 0.11 2.30 16 24 H 0.07 1.77 7.02 -2.39 -0.02 1.75 16 25 C -0.18 -1.99 8.18 71.98 0.59 -1.40 16 26 O -0.57 -8.67 13.34 -148.98 -1.99 -10.66 16 27 C -0.18 -2.22 9.57 30.60 0.29 -1.92 16 28 C -0.14 -0.95 9.46 30.60 0.29 -0.66 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.09 2.13 7.25 -2.39 -0.02 2.11 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 2.53 7.05 -2.39 -0.02 2.52 16 34 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 2.18 7.08 -2.39 -0.02 2.16 16 37 H 0.11 2.62 7.77 -2.39 -0.02 2.60 16 38 H 0.06 1.84 7.73 -2.39 -0.02 1.82 16 39 H 0.07 1.93 7.20 -2.38 -0.02 1.91 16 40 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.41 4.39 8.83 -92.72 -0.82 3.57 16 43 H 0.09 0.49 6.89 -2.39 -0.02 0.47 16 44 H 0.07 0.86 6.83 -2.38 -0.02 0.84 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.39 2.39 8.68 -74.06 -0.64 1.75 16 47 H 0.11 1.22 5.90 -2.39 -0.01 1.21 16 48 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.13 0.23 7.24 -2.39 -0.02 0.21 16 Total: -1.00 -76.49 409.89 1.05 -75.45 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.50 Total: 19.72 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.38 Total: -12.16 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -3.84 Total: -101.48 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -2.03 Total: -27.55 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -76.49 1.05 -75.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598385870.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.489 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds