Wall clock time and date at job start Tue Mar 31 2020 19:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34489 * 125.57078 * 2 1 4 4 C 1.46683 * 106.32687 * 179.97438 * 3 2 1 5 5 C 1.47273 * 126.93648 * 180.02562 * 4 3 2 6 6 O 1.21630 * 119.99687 * 137.73485 * 5 4 3 7 7 N 1.34767 * 119.99832 * 317.73270 * 5 4 3 8 8 C 1.46499 * 120.00561 * 4.89437 * 7 5 4 9 9 C 1.50699 * 109.47406 * 95.30342 * 8 7 5 10 10 H 1.07999 * 119.99984 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99793 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99673 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00218 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47363 * 89.99310 * 13 11 9 15 15 H 1.48496 * 109.46935 * 209.99378 * 13 11 9 16 16 H 1.48499 * 109.47123 * 329.99327 * 13 11 9 17 17 C 1.46508 * 119.99847 * 184.88869 * 7 5 4 18 18 C 1.53001 * 109.46756 * 90.00441 * 17 7 5 19 19 N 1.46904 * 109.46831 * 180.02562 * 18 17 7 20 20 C 1.47014 * 110.99801 * 293.63037 * 19 18 17 21 21 C 1.53098 * 109.25959 * 177.60914 * 20 19 18 22 22 O 1.43017 * 109.25644 * 56.84776 * 21 20 19 23 23 C 1.43015 * 113.73675 * 301.33076 * 22 21 20 24 24 C 1.47012 * 110.99766 * 169.99860 * 19 18 17 25 25 C 1.36765 * 106.11996 * 359.97438 * 4 3 2 26 26 C 1.50703 * 125.79987 * 180.02562 * 25 4 3 27 27 N 1.34657 * 108.39501 * 0.26438 * 25 4 3 28 28 H 0.96998 * 124.84746 * 179.70727 * 27 25 4 29 29 H 1.08998 * 109.47253 * 89.99998 * 1 2 3 30 30 H 1.08999 * 109.47132 * 210.00106 * 1 2 3 31 31 H 1.09005 * 109.47242 * 330.00036 * 1 2 3 32 32 H 1.07993 * 126.83048 * 359.96532 * 3 2 1 33 33 H 1.09005 * 109.47211 * 215.31121 * 8 7 5 34 34 H 1.09010 * 109.46665 * 335.30781 * 8 7 5 35 35 H 0.96994 * 120.00175 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47094 * 210.00018 * 17 7 5 37 37 H 1.09001 * 109.46805 * 330.00201 * 17 7 5 38 38 H 1.09000 * 109.46974 * 299.99650 * 18 17 7 39 39 H 1.08988 * 109.47545 * 59.99944 * 18 17 7 40 40 H 1.08997 * 109.50765 * 297.54847 * 20 19 18 41 41 H 1.09005 * 109.50845 * 57.67613 * 20 19 18 42 42 H 1.09002 * 109.50598 * 296.91770 * 21 20 19 43 43 H 1.08995 * 109.54284 * 176.80905 * 21 20 19 44 44 H 1.08995 * 109.50683 * 298.73241 * 23 22 21 45 45 H 1.09007 * 109.53609 * 178.62695 * 23 22 21 46 46 H 1.09001 * 109.50703 * 302.31732 * 24 19 18 47 47 H 1.08996 * 109.50842 * 62.41453 * 24 19 18 48 48 H 1.08997 * 109.47484 * 90.00334 * 26 25 4 49 49 H 1.09000 * 109.47260 * 329.99260 * 26 25 4 50 50 H 1.09009 * 109.46674 * 210.00040 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6742 0.6105 0.0006 5 6 4.8978 1.4302 0.0014 6 8 5.8365 1.1209 0.7103 7 7 4.9772 2.5229 -0.7834 8 6 3.8103 2.9567 -1.5556 9 6 3.0630 4.0145 -0.7852 10 1 3.4216 4.3322 0.1827 11 6 1.9220 4.5774 -1.3165 12 7 1.2701 5.5009 -0.6444 13 14 1.3021 4.0284 -2.9909 14 1 0.3632 2.8903 -2.8225 15 1 0.5988 5.1565 -3.6526 16 1 2.4515 3.6020 -3.8288 17 6 6.2307 3.2771 -0.8642 18 6 7.0917 2.7153 -1.9973 19 7 8.3488 3.4711 -2.0779 20 6 8.1026 4.8605 -2.4907 21 6 9.4284 5.6259 -2.5040 22 8 10.3496 4.9586 -3.3710 23 6 10.6128 3.6033 -2.9978 24 6 9.2990 2.8175 -2.9896 25 6 3.5997 -0.7551 0.0015 26 6 4.7721 -1.7020 0.0030 27 7 2.3007 -1.1098 -0.0044 28 1 1.9757 -2.0237 -0.0092 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9628 2.1233 -0.0005 33 1 4.1387 3.3666 -2.5108 34 1 3.1543 2.1042 -1.7323 35 1 0.4672 5.8967 -1.0179 36 1 6.0112 4.3265 -1.0608 37 1 6.7691 3.1890 0.0794 38 1 7.3112 1.6658 -1.8007 39 1 6.5533 2.8033 -2.9408 40 1 7.6658 4.8716 -3.4893 41 1 7.4166 5.3330 -1.7875 42 1 9.8387 5.6608 -1.4947 43 1 9.2599 6.6409 -2.8636 44 1 11.0575 3.5795 -2.0030 45 1 11.3007 3.1549 -3.7148 46 1 9.4865 1.7986 -2.6507 47 1 8.8811 2.7952 -3.9961 48 1 5.0541 -1.9296 1.0310 49 1 5.6143 -1.2383 -0.5107 50 1 4.4959 -2.6231 -0.5104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604538472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:02 Heat of formation + Delta-G solvation = -27.483672 kcal Electronic energy + Delta-G solvation = -30265.722011 eV Core-core repulsion = 26293.909590 eV Total energy + Delta-G solvation = -3971.812421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86406 -39.58335 -38.51910 -36.06255 -34.78656 -32.54034 -32.28019 -31.27623 -30.90783 -29.51062 -28.86557 -27.76319 -26.12094 -24.25721 -24.01340 -22.57059 -22.39661 -20.64735 -20.19918 -19.84572 -17.58158 -17.01111 -16.64796 -16.42983 -16.15393 -15.61276 -15.40583 -15.08413 -14.89997 -14.67070 -14.53885 -14.15799 -13.81094 -13.49023 -13.27160 -13.13590 -13.01972 -12.87265 -12.68258 -12.29575 -12.27204 -12.19526 -11.98064 -11.94151 -11.80417 -11.44024 -11.36722 -11.33042 -11.01914 -10.84225 -10.69211 -10.64368 -10.36640 -10.17790 -9.72336 -9.56682 -9.09140 -8.70822 -8.34531 -8.09926 -7.69362 -7.46327 -6.18492 -4.17687 2.37844 3.01977 3.19129 3.27156 3.29491 3.45534 3.64616 3.83465 4.02598 4.28067 4.29962 4.85523 5.00167 5.02824 5.12184 5.12421 5.17140 5.23180 5.26321 5.40845 5.42541 5.49657 5.53319 5.56383 5.64778 5.74682 5.74895 5.75614 5.81833 5.83978 5.95995 5.97167 6.09166 6.13351 6.26575 6.31849 6.47818 6.53999 6.57443 6.83861 6.88231 6.99459 7.03686 7.11024 7.42552 7.47843 7.50750 7.60594 7.90441 8.23128 8.51151 8.89146 9.10218 9.41703 10.93768 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.004049 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.668985 B = 6913.956847 C = 8882.066050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.017 4.017 3 C -0.136 4.136 4 C -0.212 4.212 5 C 0.594 3.406 6 O -0.571 6.571 7 N -0.585 5.585 8 C 0.204 3.796 9 C -0.530 4.530 10 H 0.079 0.921 11 C 0.078 3.922 12 N -0.890 5.890 13 Si 0.865 3.135 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.126 3.874 18 C 0.045 3.955 19 N -0.532 5.532 20 C 0.011 3.989 21 C 0.065 3.935 22 O -0.390 6.390 23 C 0.065 3.935 24 C 0.019 3.981 25 C 0.070 3.930 26 C -0.079 4.079 27 N -0.555 5.555 28 H 0.405 0.595 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.023 0.977 34 H 0.046 0.954 35 H 0.265 0.735 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.672 -10.021 -4.215 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C -0.159 4.159 4 C -0.222 4.222 5 C 0.384 3.616 6 O -0.452 6.452 7 N -0.315 5.315 8 C 0.083 3.917 9 C -0.569 4.569 10 H 0.097 0.903 11 C -0.125 4.125 12 N -0.528 5.528 13 Si 0.691 3.309 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.191 1.191 17 C 0.002 3.998 18 C -0.084 4.084 19 N -0.258 5.258 20 C -0.117 4.117 21 C -0.012 4.012 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.110 4.110 25 C -0.046 4.046 26 C -0.137 4.137 27 N -0.152 5.152 28 H 0.241 0.759 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.192 0.808 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.058 0.942 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.204 -10.027 -3.568 13.438 hybrid contribution -1.365 -0.670 -1.564 2.182 sum 6.840 -10.698 -5.132 13.695 Atomic orbital electron populations 1.20242 0.88314 1.02805 1.02205 1.20233 0.93258 0.86022 1.12906 1.22777 0.90071 0.99641 1.03423 1.20131 0.93907 0.91680 1.16523 1.17419 0.85583 0.79959 0.78681 1.90677 1.40148 1.72177 1.42238 1.47658 1.12393 1.26333 1.45091 1.19969 0.83969 0.96410 0.91344 1.21370 1.09184 1.20284 1.06041 0.90278 1.24824 0.96278 0.94528 0.96865 1.69895 1.18192 1.26686 1.38048 0.87020 0.79809 0.78834 0.85217 1.19566 1.21093 1.19098 1.21158 0.84405 0.95588 0.98610 1.22515 0.88939 0.98159 0.98759 1.62134 1.12323 1.02093 1.49249 1.22895 0.98388 0.89876 1.00506 1.22687 0.88223 0.95670 0.94657 1.87953 1.64096 1.25153 1.53611 1.22638 0.95550 0.82108 1.00894 1.22760 0.93974 0.99027 0.95230 1.20002 0.84761 0.93994 1.05821 1.20296 0.94264 0.96180 1.02914 1.41338 1.05147 1.08195 1.60520 0.75908 0.91639 0.92504 0.89930 0.80757 0.95940 0.93664 0.92453 0.90283 0.89785 0.90682 0.94646 0.93866 0.88656 0.92165 0.88462 0.92247 0.88764 0.89740 0.94173 0.90681 0.90115 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.41 36.01 0.37 -0.66 16 2 C -0.02 -0.27 7.13 -81.87 -0.58 -0.86 16 3 C -0.14 -2.77 8.56 -37.50 -0.32 -3.09 16 4 C -0.21 -4.31 5.33 -103.35 -0.55 -4.86 16 5 C 0.59 13.01 7.25 -12.59 -0.09 12.92 16 6 O -0.57 -13.24 16.09 5.25 0.08 -13.16 16 7 N -0.59 -12.49 2.46 -176.37 -0.43 -12.92 16 8 C 0.20 4.65 3.77 -5.19 -0.02 4.63 16 9 C -0.53 -13.81 7.89 -34.44 -0.27 -14.08 16 10 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 11 C 0.08 2.07 5.42 -17.82 -0.10 1.98 16 12 N -0.89 -25.34 13.96 55.43 0.77 -24.56 16 13 Si 0.86 19.80 27.47 -169.99 -4.67 15.13 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 17 C 0.13 2.39 5.40 -4.04 -0.02 2.37 16 18 C 0.05 0.73 5.28 -3.82 -0.02 0.71 16 19 N -0.53 -7.64 4.73 -234.31 -1.11 -8.74 16 20 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 21 C 0.06 0.76 7.01 37.21 0.26 1.02 16 22 O -0.39 -5.03 10.83 -35.23 -0.38 -5.41 16 23 C 0.07 0.71 7.01 37.21 0.26 0.97 16 24 C 0.02 0.23 5.64 -3.71 -0.02 0.20 16 25 C 0.07 1.17 7.17 -81.88 -0.59 0.58 16 26 C -0.08 -1.05 9.92 36.01 0.36 -0.69 16 27 N -0.55 -7.93 5.90 -5.42 -0.03 -7.96 16 28 H 0.41 4.15 8.96 -40.82 -0.37 3.79 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.18 4.06 5.58 -52.49 -0.29 3.77 16 33 H 0.02 0.51 7.17 -51.93 -0.37 0.14 16 34 H 0.05 1.04 4.65 -51.92 -0.24 0.80 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.08 1.50 6.45 -51.93 -0.33 1.17 16 37 H 0.08 1.68 7.36 -51.93 -0.38 1.29 16 38 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 39 H 0.04 0.59 8.12 -51.94 -0.42 0.17 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.32 6.38 -51.93 -0.33 0.98 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.08 1.17 7.75 -51.93 -0.40 0.77 16 50 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -31.75 395.29 -9.38 -41.13 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.22 Total: 9.27 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.35 Total: 1.27 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.80 Total: -54.18 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.30 Total: -18.57 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.13 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.75 -9.38 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604538472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.644 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds