Wall clock time and date at job start Tue Mar 31 2020 19:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34489 * 125.57078 * 2 1 4 4 C 1.46683 * 106.32687 * 179.97438 * 3 2 1 5 5 C 1.47273 * 126.93648 * 180.02562 * 4 3 2 6 6 O 1.21630 * 119.99687 * 137.73485 * 5 4 3 7 7 N 1.34767 * 119.99832 * 317.73270 * 5 4 3 8 8 C 1.46499 * 120.00561 * 4.89437 * 7 5 4 9 9 C 1.50699 * 109.47406 * 95.30342 * 8 7 5 10 10 H 1.07999 * 119.99984 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99793 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99673 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00218 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47363 * 89.99310 * 13 11 9 15 15 H 1.48496 * 109.46935 * 209.99378 * 13 11 9 16 16 H 1.48499 * 109.47123 * 329.99327 * 13 11 9 17 17 C 1.46508 * 119.99847 * 184.88869 * 7 5 4 18 18 C 1.53001 * 109.46756 * 90.00441 * 17 7 5 19 19 N 1.46904 * 109.46831 * 180.02562 * 18 17 7 20 20 C 1.47014 * 110.99801 * 293.63037 * 19 18 17 21 21 C 1.53098 * 109.25959 * 177.60914 * 20 19 18 22 22 O 1.43017 * 109.25644 * 56.84776 * 21 20 19 23 23 C 1.43015 * 113.73675 * 301.33076 * 22 21 20 24 24 C 1.47012 * 110.99766 * 169.99860 * 19 18 17 25 25 C 1.36765 * 106.11996 * 359.97438 * 4 3 2 26 26 C 1.50703 * 125.79987 * 180.02562 * 25 4 3 27 27 N 1.34657 * 108.39501 * 0.26438 * 25 4 3 28 28 H 0.96998 * 124.84746 * 179.70727 * 27 25 4 29 29 H 1.08998 * 109.47253 * 89.99998 * 1 2 3 30 30 H 1.08999 * 109.47132 * 210.00106 * 1 2 3 31 31 H 1.09005 * 109.47242 * 330.00036 * 1 2 3 32 32 H 1.07993 * 126.83048 * 359.96532 * 3 2 1 33 33 H 1.09005 * 109.47211 * 215.31121 * 8 7 5 34 34 H 1.09010 * 109.46665 * 335.30781 * 8 7 5 35 35 H 0.96994 * 120.00175 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47094 * 210.00018 * 17 7 5 37 37 H 1.09001 * 109.46805 * 330.00201 * 17 7 5 38 38 H 1.09000 * 109.46974 * 299.99650 * 18 17 7 39 39 H 1.08988 * 109.47545 * 59.99944 * 18 17 7 40 40 H 1.08997 * 109.50765 * 297.54847 * 20 19 18 41 41 H 1.09005 * 109.50845 * 57.67613 * 20 19 18 42 42 H 1.09002 * 109.50598 * 296.91770 * 21 20 19 43 43 H 1.08995 * 109.54284 * 176.80905 * 21 20 19 44 44 H 1.08995 * 109.50683 * 298.73241 * 23 22 21 45 45 H 1.09007 * 109.53609 * 178.62695 * 23 22 21 46 46 H 1.09001 * 109.50703 * 302.31732 * 24 19 18 47 47 H 1.08996 * 109.50842 * 62.41453 * 24 19 18 48 48 H 1.08997 * 109.47484 * 90.00334 * 26 25 4 49 49 H 1.09000 * 109.47260 * 329.99260 * 26 25 4 50 50 H 1.09009 * 109.46674 * 210.00040 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6742 0.6105 0.0006 5 6 4.8978 1.4302 0.0014 6 8 5.8365 1.1209 0.7103 7 7 4.9772 2.5229 -0.7834 8 6 3.8103 2.9567 -1.5556 9 6 3.0630 4.0145 -0.7852 10 1 3.4216 4.3322 0.1827 11 6 1.9220 4.5774 -1.3165 12 7 1.2701 5.5009 -0.6444 13 14 1.3021 4.0284 -2.9909 14 1 0.3632 2.8903 -2.8225 15 1 0.5988 5.1565 -3.6526 16 1 2.4515 3.6020 -3.8288 17 6 6.2307 3.2771 -0.8642 18 6 7.0917 2.7153 -1.9973 19 7 8.3488 3.4711 -2.0779 20 6 8.1026 4.8605 -2.4907 21 6 9.4284 5.6259 -2.5040 22 8 10.3496 4.9586 -3.3710 23 6 10.6128 3.6033 -2.9978 24 6 9.2990 2.8175 -2.9896 25 6 3.5997 -0.7551 0.0015 26 6 4.7721 -1.7020 0.0030 27 7 2.3007 -1.1098 -0.0044 28 1 1.9757 -2.0237 -0.0092 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9628 2.1233 -0.0005 33 1 4.1387 3.3666 -2.5108 34 1 3.1543 2.1042 -1.7323 35 1 0.4672 5.8967 -1.0179 36 1 6.0112 4.3265 -1.0608 37 1 6.7691 3.1890 0.0794 38 1 7.3112 1.6658 -1.8007 39 1 6.5533 2.8033 -2.9408 40 1 7.6658 4.8716 -3.4893 41 1 7.4166 5.3330 -1.7875 42 1 9.8387 5.6608 -1.4947 43 1 9.2599 6.6409 -2.8636 44 1 11.0575 3.5795 -2.0030 45 1 11.3007 3.1549 -3.7148 46 1 9.4865 1.7986 -2.6507 47 1 8.8811 2.7952 -3.9961 48 1 5.0541 -1.9296 1.0310 49 1 5.6143 -1.2383 -0.5107 50 1 4.4959 -2.6231 -0.5104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604538472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:01 Heat of formation + Delta-G solvation = -49.938618 kcal Electronic energy + Delta-G solvation = -30266.695730 eV Core-core repulsion = 26293.909590 eV Total energy + Delta-G solvation = -3972.786140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.23649 -40.72201 -40.05242 -37.39264 -36.38595 -34.52177 -33.49728 -32.48713 -32.12040 -30.93319 -29.97429 -29.54313 -27.40180 -25.58153 -25.03307 -24.41509 -23.77159 -21.99691 -21.34574 -21.22713 -19.23279 -19.02257 -18.00621 -17.66157 -17.18890 -17.06201 -16.81826 -16.27458 -16.16530 -15.97902 -15.79365 -15.69739 -15.19907 -14.87976 -14.72536 -14.59411 -14.44894 -14.12846 -14.03966 -13.75870 -13.61267 -13.49555 -13.23541 -13.15197 -12.95448 -12.88426 -12.77417 -12.47820 -12.44408 -12.35138 -12.27376 -12.12463 -11.84653 -11.69387 -11.46508 -10.82894 -10.75161 -10.70129 -9.59497 -9.53271 -9.35042 -8.83309 -8.27424 -6.31670 0.96370 1.37518 1.38302 1.47586 1.55799 2.09032 2.34356 2.37548 2.45537 2.85346 2.99171 3.06309 3.76326 3.87066 3.96437 3.98243 4.00927 4.09802 4.18293 4.25981 4.34395 4.34846 4.37683 4.44240 4.51407 4.58086 4.70730 4.72604 4.73092 4.76614 4.79661 4.80478 4.85467 4.87668 4.90212 4.99582 5.03110 5.07900 5.10980 5.21701 5.42557 5.48803 5.69781 5.88276 5.91990 5.98744 6.13549 6.15737 6.22974 6.65438 6.72852 6.79947 7.28236 7.43013 8.88843 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.004049 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.668985 B = 6913.956847 C = 8882.066050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.004 3.996 3 C -0.181 4.181 4 C -0.260 4.260 5 C 0.588 3.412 6 O -0.593 6.593 7 N -0.591 5.591 8 C 0.221 3.779 9 C -0.524 4.524 10 H 0.027 0.973 11 C 0.030 3.970 12 N -0.938 5.938 13 Si 0.929 3.071 14 H -0.254 1.254 15 H -0.284 1.284 16 H -0.252 1.252 17 C 0.129 3.871 18 C 0.064 3.936 19 N -0.540 5.540 20 C 0.011 3.989 21 C 0.068 3.932 22 O -0.402 6.402 23 C 0.065 3.935 24 C 0.018 3.982 25 C 0.090 3.910 26 C -0.076 4.076 27 N -0.531 5.531 28 H 0.431 0.569 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.268 0.732 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.121 0.879 46 H 0.096 0.904 47 H 0.038 0.962 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 -13.119 -6.119 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.270 4.270 5 C 0.379 3.621 6 O -0.476 6.476 7 N -0.321 5.321 8 C 0.099 3.901 9 C -0.563 4.563 10 H 0.045 0.955 11 C -0.169 4.169 12 N -0.578 5.578 13 Si 0.752 3.248 14 H -0.178 1.178 15 H -0.210 1.210 16 H -0.176 1.176 17 C 0.005 3.995 18 C -0.065 4.065 19 N -0.266 5.266 20 C -0.117 4.117 21 C -0.008 4.008 22 O -0.321 6.321 23 C -0.011 4.011 24 C -0.110 4.110 25 C -0.028 4.028 26 C -0.134 4.134 27 N -0.130 5.130 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.139 0.861 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.100 0.900 49 H 0.084 0.916 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.192 -13.159 -5.476 16.439 hybrid contribution -1.340 0.279 -0.830 1.601 sum 6.852 -12.880 -6.307 15.894 Atomic orbital electron populations 1.20354 0.85707 1.04093 1.03381 1.20517 0.94664 0.85480 1.09844 1.22432 0.91219 0.99218 1.07650 1.20189 0.93053 0.93460 1.20290 1.17804 0.86127 0.80040 0.78108 1.90635 1.41208 1.72832 1.42975 1.47720 1.12673 1.26601 1.45063 1.19690 0.84196 0.95375 0.90856 1.21330 1.09705 1.21008 1.04246 0.95489 1.25578 0.96141 0.94276 1.00878 1.70041 1.19004 1.28423 1.40300 0.85992 0.79851 0.78832 0.80164 1.17823 1.20958 1.17554 1.21165 0.84009 0.95209 0.99108 1.22204 0.89389 0.97921 0.97031 1.62129 1.11560 1.02448 1.50492 1.22914 0.99421 0.89679 0.99717 1.22721 0.87014 0.96133 0.94969 1.87940 1.64047 1.26080 1.54015 1.22800 0.95137 0.81195 1.02015 1.22870 0.93886 0.99726 0.94543 1.20380 0.86420 0.93126 1.02866 1.20389 0.92332 0.96902 1.03764 1.41257 1.04082 1.09045 1.58566 0.72858 0.90390 0.88799 0.91118 0.84603 0.95448 0.93011 0.92267 0.91148 0.91351 0.90936 0.94979 0.94448 0.89756 0.91857 0.86738 0.91927 0.86086 0.88612 0.94325 0.89980 0.91554 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.41 71.24 0.74 -1.10 16 2 C 0.00 0.13 7.13 40.98 0.29 0.43 16 3 C -0.18 -7.54 8.56 23.62 0.20 -7.34 16 4 C -0.26 -10.67 5.33 -19.04 -0.10 -10.77 16 5 C 0.59 26.74 7.25 86.62 0.63 27.37 16 6 O -0.59 -28.48 16.09 -4.13 -0.07 -28.54 16 7 N -0.59 -26.46 2.46 -830.18 -2.04 -28.50 16 8 C 0.22 10.36 3.77 85.63 0.32 10.69 16 9 C -0.52 -28.93 7.89 25.60 0.20 -28.73 16 10 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 11 C 0.03 1.67 5.42 84.66 0.46 2.13 16 12 N -0.94 -55.77 13.96 21.45 0.30 -55.47 16 13 Si 0.93 41.01 27.47 68.60 1.88 42.89 16 14 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 17 C 0.13 5.13 5.40 86.38 0.47 5.60 16 18 C 0.06 2.10 5.28 86.30 0.46 2.56 16 19 N -0.54 -15.50 4.73 -895.22 -4.23 -19.73 16 20 C 0.01 0.29 5.44 86.31 0.47 0.76 16 21 C 0.07 1.57 7.01 72.01 0.50 2.07 16 22 O -0.40 -9.76 10.83 -148.98 -1.61 -11.37 16 23 C 0.07 1.30 7.01 72.02 0.50 1.81 16 24 C 0.02 0.41 5.64 86.32 0.49 0.89 16 25 C 0.09 2.82 7.17 41.78 0.30 3.12 16 26 C -0.08 -1.81 9.92 71.24 0.71 -1.11 16 27 N -0.53 -13.41 5.90 -171.07 -1.01 -14.42 16 28 H 0.43 6.70 8.96 -92.71 -0.83 5.87 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.14 6.72 5.58 -2.91 -0.02 6.71 16 33 H 0.03 1.26 7.17 -2.38 -0.02 1.24 16 34 H 0.05 2.41 4.65 -2.38 -0.01 2.40 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.10 16 36 H 0.07 2.88 6.45 -2.39 -0.02 2.86 16 37 H 0.07 2.91 7.36 -2.39 -0.02 2.90 16 38 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 39 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.08 2.45 6.38 -2.38 -0.02 2.43 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.10 1.98 8.09 -2.39 -0.02 1.96 16 47 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.07 1.81 7.75 -2.39 -0.02 1.79 16 50 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -73.72 395.29 -0.08 -73.80 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.06 Total: 32.97 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.64 Total: 8.37 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -6.98 Total: -118.12 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.68 Total: -39.92 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.88 Total: 42.89 kcal Total: -73.72 -0.08 -73.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604538472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.865 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds