Wall clock time and date at job start Tue Mar 31 2020 20:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30831 * 125.89926 * 2 1 4 4 N 1.40084 * 108.20611 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03497 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47147 * 90.02285 * 5 4 3 7 7 H 1.07998 * 120.00104 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99687 * 179.71969 * 6 5 4 9 9 N 1.31510 * 119.99884 * 180.27385 * 8 6 5 10 10 Si 1.86807 * 120.00281 * 0.27978 * 8 6 5 11 11 H 1.48502 * 109.47139 * 89.99759 * 10 8 6 12 12 H 1.48500 * 109.47100 * 209.99576 * 10 8 6 13 13 H 1.48499 * 109.46625 * 329.99863 * 10 8 6 14 14 C 1.34943 * 107.92707 * 0.26280 * 4 3 2 15 15 C 1.50699 * 126.12821 * 179.73534 * 14 4 3 16 16 C 1.35323 * 107.74215 * 359.57944 * 14 4 3 17 17 C 1.50700 * 126.03702 * 180.16194 * 16 14 4 18 18 C 1.52999 * 109.47096 * 270.28100 * 17 16 14 19 19 C 1.50700 * 109.47096 * 179.97438 * 18 17 16 20 20 O 1.21277 * 120.00362 * 0.02562 * 19 18 17 21 21 N 1.34783 * 119.99991 * 180.02562 * 19 18 17 22 22 C 1.46493 * 120.00186 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.47505 * 174.45030 * 22 21 19 24 24 C 1.52999 * 115.54933 * 294.90893 * 23 22 21 25 25 O 1.42902 * 109.47092 * 294.89229 * 24 23 22 26 26 C 1.52997 * 117.49865 * 149.23396 * 23 22 21 27 27 C 1.53002 * 117.49527 * 80.57638 * 23 22 21 28 28 H 1.09000 * 109.47211 * 90.02712 * 1 2 3 29 29 H 1.09005 * 109.47118 * 210.01994 * 1 2 3 30 30 H 1.08990 * 109.47348 * 330.02360 * 1 2 3 31 31 H 1.09000 * 109.47262 * 330.02103 * 5 4 3 32 32 H 1.09003 * 109.46978 * 210.02000 * 5 4 3 33 33 H 0.97005 * 120.00248 * 180.02562 * 9 8 6 34 34 H 1.09008 * 109.46865 * 90.02843 * 15 14 4 35 35 H 1.08996 * 109.47306 * 210.02101 * 15 14 4 36 36 H 1.08994 * 109.47163 * 330.03032 * 15 14 4 37 37 H 1.09003 * 109.47653 * 30.28070 * 17 16 14 38 38 H 1.09004 * 109.46998 * 150.28208 * 17 16 14 39 39 H 1.08999 * 109.46929 * 299.99958 * 18 17 16 40 40 H 1.09004 * 109.47109 * 60.00175 * 18 17 16 41 41 H 0.96998 * 119.99425 * 359.97438 * 21 19 18 42 42 H 1.09004 * 109.46658 * 294.45134 * 22 21 19 43 43 H 1.08995 * 109.47348 * 54.44865 * 22 21 19 44 44 H 1.09002 * 109.46894 * 54.88710 * 24 23 22 45 45 H 1.08994 * 109.47190 * 174.88841 * 24 23 22 46 46 H 0.96697 * 113.99832 * 180.02562 * 25 24 23 47 47 H 1.08997 * 117.50101 * 0.02562 * 26 23 22 48 48 H 1.09006 * 117.49515 * 145.02825 * 26 23 22 49 49 H 1.09004 * 117.49335 * 214.98621 * 27 23 22 50 50 H 1.08998 * 117.50095 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 5.1945 1.7973 1.4224 7 1 4.6282 1.3820 2.2430 8 6 6.2908 2.5944 1.6750 9 7 6.6471 2.8488 2.9151 10 14 7.2698 3.3133 0.2557 11 1 6.7051 4.6356 -0.1156 12 1 8.6876 3.4780 0.6656 13 1 7.1950 2.3977 -0.9110 14 6 3.6143 -0.7154 -0.0049 15 6 4.8351 -1.5989 -0.0120 16 6 2.3271 -1.1330 0.0005 17 6 1.8599 -2.5658 0.0008 18 6 1.7018 -3.0508 -1.4417 19 6 1.2352 -4.4838 -1.4415 20 8 1.0472 -5.0602 -0.3911 21 7 1.0268 -5.1248 -2.6086 22 6 0.5727 -6.5176 -2.6085 23 6 0.2826 -6.9597 -4.0442 24 6 -0.8751 -6.2372 -4.7359 25 8 -2.0987 -6.5483 -4.0666 26 6 0.5004 -8.4348 -4.3868 27 6 1.4739 -7.3755 -4.9096 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5134 31 1 4.5564 2.4335 -0.5121 32 1 5.6095 0.9984 -0.5125 33 1 7.4182 3.4099 3.0928 34 1 5.1320 -1.8165 1.0140 35 1 4.6063 -2.5306 -0.5293 36 1 5.6499 -1.0886 -0.5256 37 1 2.5934 -3.1871 0.5146 38 1 0.9011 -2.6352 0.5147 39 1 0.9682 -2.4295 -1.9555 40 1 2.6606 -2.9814 -1.9556 41 1 1.1768 -4.6637 -3.4487 42 1 1.3494 -7.1529 -2.1825 43 1 -0.3350 -6.6038 -2.0114 44 1 -0.7049 -5.1611 -4.7003 45 1 -0.9366 -6.5611 -5.7748 46 1 -2.8771 -6.1238 -4.4525 47 1 0.8500 -9.0905 -3.5893 48 1 -0.1809 -8.8905 -5.1054 49 1 1.4326 -7.1346 -5.9719 50 1 2.4642 -7.3346 -4.4560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610779263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:15 Heat of formation + Delta-G solvation = -7.470260 kcal Electronic energy + Delta-G solvation = -28475.674822 eV Core-core repulsion = 24504.730248 eV Total energy + Delta-G solvation = -3970.944574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.70470 -40.00063 -38.77140 -36.28775 -34.49538 -34.23599 -33.36316 -32.49248 -30.55433 -29.30888 -28.20766 -27.15107 -26.09737 -26.08115 -23.56612 -22.91569 -21.87688 -20.44085 -19.72359 -18.86228 -18.67419 -17.78592 -17.22037 -17.11568 -16.42445 -15.88329 -15.61284 -15.44909 -15.14376 -14.66491 -14.18723 -14.03978 -13.95865 -13.70339 -13.31133 -13.18199 -13.02710 -12.87205 -12.69626 -12.48475 -12.31251 -12.12428 -12.03218 -11.96891 -11.92560 -11.59641 -11.49070 -11.32701 -11.00708 -10.97384 -10.74374 -10.71657 -10.69458 -10.36444 -10.23364 -9.83162 -9.68256 -9.65008 -9.20942 -8.79345 -8.23674 -7.50947 -6.27034 -4.30145 2.64481 2.67308 2.81336 3.13744 3.19190 3.20888 3.24008 3.41127 3.49883 3.80914 4.15512 4.20004 4.24034 4.40408 4.65209 4.77719 4.89892 5.00290 5.09525 5.15048 5.17844 5.23364 5.28786 5.30005 5.39426 5.40986 5.53519 5.59132 5.62036 5.66303 5.75365 5.81357 5.91315 5.95086 5.95837 6.02242 6.21818 6.24561 6.30269 6.37019 6.47596 6.49514 6.80676 6.93851 7.16039 7.28028 7.36634 7.43030 7.85673 8.18205 8.30714 8.59588 8.78614 9.27999 10.85505 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.002087 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.160584 B =13414.491732 C =13963.907738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.055 3.945 3 N -0.295 5.295 4 N -0.325 5.325 5 C 0.230 3.770 6 C -0.540 4.540 7 H 0.080 0.920 8 C 0.078 3.922 9 N -0.886 5.886 10 Si 0.874 3.126 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.096 3.904 15 C -0.087 4.087 16 C -0.265 4.265 17 C -0.012 4.012 18 C -0.133 4.133 19 C 0.512 3.488 20 O -0.538 6.538 21 N -0.734 5.734 22 C 0.161 3.839 23 C -0.148 4.148 24 C 0.115 3.885 25 O -0.567 6.567 26 C -0.154 4.154 27 C -0.164 4.164 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.269 0.731 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.398 0.602 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.380 0.620 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 -19.746 -19.428 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 N -0.118 5.118 4 N -0.104 5.104 5 C 0.111 3.889 6 C -0.578 4.578 7 H 0.098 0.902 8 C -0.126 4.126 9 N -0.523 5.523 10 Si 0.701 3.299 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.190 1.190 14 C -0.035 4.035 15 C -0.145 4.145 16 C -0.277 4.277 17 C -0.051 4.051 18 C -0.173 4.173 19 C 0.300 3.700 20 O -0.415 6.415 21 N -0.387 5.387 22 C 0.038 3.962 23 C -0.148 4.148 24 C 0.037 3.963 25 O -0.372 6.372 26 C -0.192 4.192 27 C -0.201 4.201 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.232 0.768 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.228 0.772 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.832 -19.009 -18.148 28.822 hybrid contribution 0.419 0.310 -1.402 1.495 sum -11.413 -18.699 -19.549 29.362 Atomic orbital electron populations 1.20040 0.87883 1.02627 1.01827 1.21967 0.96186 0.90698 1.02162 1.77274 0.87164 1.22642 1.24755 1.48773 1.05429 1.04031 1.52179 1.19969 0.79493 0.89745 0.99697 1.21160 1.13711 1.32592 0.90353 0.90151 1.24819 0.96608 0.95369 0.95794 1.69873 1.26675 1.37114 1.18612 0.86884 0.79995 0.80444 0.82623 1.19624 1.20535 1.18979 1.20766 0.96258 0.85363 1.01067 1.20370 0.93525 0.97153 1.03487 1.19364 0.91251 0.95213 1.21825 1.19405 1.01766 0.90695 0.93199 1.21739 1.02911 0.91312 1.01313 1.21029 0.76615 0.89195 0.83172 1.90705 1.50908 1.68589 1.31273 1.46038 1.70010 1.13677 1.08944 1.20686 1.00134 0.82255 0.93155 1.21598 0.97573 0.99243 0.96387 1.21549 0.83369 0.97665 0.93726 1.86507 1.16776 1.74707 1.59225 1.22979 1.02170 0.90588 1.03417 1.23108 0.94481 1.02998 0.99513 0.91573 0.91084 0.91466 0.93754 0.93536 0.92116 0.90091 0.90924 0.91206 0.91280 0.91125 0.89068 0.89159 0.76786 0.91737 0.90260 0.93084 0.93427 0.77247 0.88193 0.88251 0.88337 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.26 36.01 0.37 -0.55 16 2 C 0.05 1.02 7.22 -82.41 -0.59 0.43 16 3 N -0.29 -6.67 12.57 33.67 0.42 -6.24 16 4 N -0.32 -7.41 3.60 -58.31 -0.21 -7.62 16 5 C 0.23 5.54 5.07 -5.19 -0.03 5.51 16 6 C -0.54 -15.22 9.94 -34.44 -0.34 -15.56 16 7 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 9 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 10 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 14 C 0.10 1.88 6.93 -82.26 -0.57 1.31 16 15 C -0.09 -1.39 9.72 36.01 0.35 -1.04 16 16 C -0.26 -4.66 5.35 -105.05 -0.56 -5.23 16 17 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 18 C -0.13 -1.47 5.68 -27.88 -0.16 -1.63 16 19 C 0.51 6.08 7.83 -10.98 -0.09 5.99 16 20 O -0.54 -8.60 15.97 5.56 0.09 -8.51 16 21 N -0.73 -6.39 5.40 -60.30 -0.33 -6.72 16 22 C 0.16 1.44 5.46 -4.05 -0.02 1.42 16 23 C -0.15 -0.95 1.80 -154.51 -0.28 -1.23 16 24 C 0.11 0.65 6.80 37.16 0.25 0.90 16 25 O -0.57 -4.00 13.57 -35.23 -0.48 -4.47 16 26 C -0.15 -0.88 9.94 -26.70 -0.27 -1.14 16 27 C -0.16 -0.81 9.94 -26.69 -0.27 -1.08 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 1.07 7.58 -51.93 -0.39 0.67 16 32 H 0.05 1.04 6.09 -51.93 -0.32 0.73 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 35 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 36 H 0.07 1.10 7.07 -51.93 -0.37 0.73 16 37 H 0.07 1.04 7.75 -51.93 -0.40 0.63 16 38 H 0.07 1.04 7.21 -51.93 -0.37 0.66 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 2.46 8.16 -40.82 -0.33 2.13 16 42 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 43 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 44 H 0.05 0.25 7.75 -51.93 -0.40 -0.15 16 45 H 0.05 0.20 8.09 -51.93 -0.42 -0.22 16 46 H 0.38 1.05 9.12 45.56 0.42 1.47 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 414.83 15.07 6.25 6.25 Total: -1.00 -35.90 414.83 -8.18 -44.08 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.61 Total: 3.48 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.42 Total: -10.10 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.66 Total: -46.26 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.39 Total: -12.99 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.90 -8.18 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610779263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.605 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds