Wall clock time and date at job start Tue Mar 31 2020 20:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30843 * 125.89799 * 2 1 4 4 N 1.40078 * 108.20621 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03890 * 179.97438 * 4 3 2 6 6 C 1.34956 * 107.92651 * 359.75769 * 4 3 2 7 7 C 1.50697 * 126.12609 * 180.23978 * 6 4 3 8 8 C 1.35317 * 107.74309 * 0.39130 * 6 4 3 9 9 C 1.50698 * 126.03962 * 179.87698 * 8 6 4 10 10 H 1.09000 * 109.46735 * 359.71029 * 9 8 6 11 11 C 1.52991 * 109.47285 * 119.71167 * 9 8 6 12 12 C 1.50701 * 109.46967 * 239.71198 * 9 8 6 13 13 O 1.20828 * 119.99891 * 359.97438 * 12 9 8 14 14 O 1.34232 * 120.00057 * 179.97438 * 12 9 8 15 15 C 1.45199 * 116.99737 * 180.02562 * 14 12 9 16 16 C 1.53065 * 109.45512 * 89.79504 * 15 14 12 17 17 C 1.53192 * 109.29648 * 181.23998 * 16 15 14 18 18 N 1.46922 * 108.89269 * 305.57538 * 17 16 15 19 19 C 1.36942 * 120.62796 * 233.51528 * 18 17 16 20 20 H 1.08007 * 119.99636 * 151.83092 * 19 18 17 21 21 C 1.38806 * 120.00203 * 331.83144 * 19 18 17 22 22 N 1.31624 * 120.00191 * 343.08250 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 163.07925 * 21 19 18 24 24 H 1.48503 * 109.47195 * 89.99708 * 23 21 19 25 25 H 1.48498 * 109.47355 * 210.00264 * 23 21 19 26 26 H 1.48504 * 109.46850 * 330.00278 * 23 21 19 27 27 C 1.46924 * 118.73925 * 53.53382 * 18 17 16 28 28 C 1.53049 * 109.45382 * 210.00125 * 15 14 12 29 29 H 1.09008 * 109.47243 * 269.97461 * 1 2 3 30 30 H 1.09004 * 109.47488 * 29.97434 * 1 2 3 31 31 H 1.08997 * 109.47263 * 149.97606 * 1 2 3 32 32 H 1.09004 * 109.46955 * 89.97386 * 5 4 3 33 33 H 1.08993 * 109.47305 * 209.97365 * 5 4 3 34 34 H 1.08995 * 109.46711 * 329.98168 * 5 4 3 35 35 H 1.08995 * 109.47061 * 270.17410 * 7 6 4 36 36 H 1.08998 * 109.47413 * 30.17754 * 7 6 4 37 37 H 1.09005 * 109.46661 * 150.17833 * 7 6 4 38 38 H 1.09007 * 109.47555 * 299.99934 * 11 9 8 39 39 H 1.09000 * 109.47347 * 60.00236 * 11 9 8 40 40 H 1.09001 * 109.47299 * 179.97438 * 11 9 8 41 41 H 1.08992 * 109.46204 * 329.96949 * 15 14 12 42 42 H 1.09005 * 109.39523 * 61.36062 * 16 15 14 43 43 H 1.09004 * 109.62174 * 301.25749 * 16 15 14 44 44 H 1.09003 * 109.58615 * 185.71531 * 17 16 15 45 45 H 1.08998 * 109.58372 * 65.43477 * 17 16 15 46 46 H 0.96995 * 120.00379 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.58325 * 66.18371 * 27 18 17 48 48 H 1.08996 * 109.58499 * 186.46256 * 27 18 17 49 49 H 1.09002 * 109.49883 * 58.66698 * 28 15 14 50 50 H 1.08993 * 109.49715 * 298.56551 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5009 -0.0013 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5988 0.0109 8 6 2.3271 -1.1330 -0.0006 9 6 1.8599 -2.5657 -0.0003 10 1 2.7243 -3.2297 -0.0005 11 6 1.0165 -2.8268 1.2491 12 6 1.0284 -2.8232 -1.2305 13 8 0.8347 -1.9343 -2.0257 14 8 0.5031 -4.0400 -1.4430 15 6 -0.2863 -4.2158 -2.6489 16 6 0.6258 -4.6598 -3.7951 17 6 -0.2053 -4.8141 -5.0727 18 7 -1.3269 -5.7241 -4.8035 19 6 -1.5425 -6.8194 -5.5967 20 1 -2.0230 -7.6960 -5.1878 21 6 -1.1436 -6.8030 -6.9261 22 7 -0.8712 -5.6591 -7.5174 23 14 -0.9932 -8.4045 -7.8759 24 1 -2.2905 -8.7173 -8.5274 25 1 0.0613 -8.2680 -8.9125 26 1 -0.6309 -9.5013 -6.9426 27 6 -2.2131 -5.4363 -3.6675 28 6 -1.3605 -5.2783 -2.4046 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 5.0830 1.7164 1.0262 33 1 5.6091 0.9981 -0.5150 34 1 4.5560 2.4331 -0.5155 35 1 5.1338 -1.8131 -1.0152 36 1 5.6489 -1.0902 0.5276 37 1 4.6053 -2.5322 0.5249 38 1 1.6178 -2.6406 2.1390 39 1 0.1520 -2.1629 1.2493 40 1 0.6781 -3.8630 1.2491 41 1 -0.7629 -3.2715 -2.9118 42 1 1.0856 -5.6153 -3.5425 43 1 1.4031 -3.9125 -3.9548 44 1 0.4178 -5.2268 -5.8662 45 1 -0.5894 -3.8410 -5.3785 46 1 -0.5928 -5.6476 -8.4465 47 1 -2.7611 -4.5131 -3.8563 48 1 -2.9166 -6.2583 -3.5355 49 1 -1.9949 -4.9700 -1.5736 50 1 -0.8840 -6.2291 -2.1660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770772078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:08 Heat of formation + Delta-G solvation = -19.564847 kcal Electronic energy + Delta-G solvation = -30044.642560 eV Core-core repulsion = 26073.173525 eV Total energy + Delta-G solvation = -3971.469035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.59030 -41.43143 -39.12169 -37.27264 -35.79110 -34.75690 -34.45053 -32.22284 -31.84507 -31.45271 -30.39068 -27.76268 -27.23946 -26.54678 -25.39145 -23.95908 -23.74108 -22.03684 -21.01921 -20.54214 -20.27349 -18.85796 -18.48292 -17.79566 -17.04313 -16.89006 -16.73905 -16.43559 -15.67457 -15.46520 -15.40192 -15.03763 -14.83106 -14.64957 -14.41408 -14.39690 -14.07693 -13.97176 -13.76915 -13.61048 -13.48855 -13.27077 -13.20508 -13.08146 -12.95753 -12.87295 -12.67445 -12.58818 -12.47941 -12.32390 -12.25114 -12.09981 -11.93605 -11.82169 -11.51223 -11.36610 -11.17998 -10.98979 -10.55417 -10.00032 -9.30118 -8.75456 -7.89931 -5.36469 0.84339 1.31037 1.45069 1.48099 1.49382 1.59409 1.63608 2.03050 2.50880 3.26640 3.47504 3.56363 3.67759 3.70612 3.82695 3.91562 4.06199 4.13443 4.16110 4.21072 4.29909 4.35301 4.39567 4.40190 4.50291 4.58209 4.62196 4.69047 4.71605 4.73849 4.79130 4.86942 4.89949 4.93642 4.99377 5.02621 5.05969 5.08384 5.15836 5.22117 5.26655 5.34188 5.38851 5.56828 5.64658 5.68583 5.71865 6.15086 6.36186 6.74716 6.88050 7.10415 7.80292 8.33446 9.17797 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.002567 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.330345 B =10903.462169 C =11324.451365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.091 3.909 3 N -0.342 5.342 4 N -0.380 5.380 5 C 0.093 3.907 6 C 0.099 3.901 7 C -0.096 4.096 8 C -0.252 4.252 9 C 0.009 3.991 10 H 0.133 0.867 11 C -0.138 4.138 12 C 0.457 3.543 13 O -0.531 6.531 14 O -0.349 6.349 15 C 0.106 3.894 16 C -0.138 4.138 17 C 0.185 3.815 18 N -0.610 5.610 19 C -0.263 4.263 20 H 0.075 0.925 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.266 1.266 27 C 0.142 3.858 28 C -0.112 4.112 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.061 0.939 45 H -0.009 1.009 46 H 0.250 0.750 47 H 0.015 0.985 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.348 8.355 22.652 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.165 5.165 4 N -0.162 5.162 5 C -0.047 4.047 6 C -0.029 4.029 7 C -0.154 4.154 8 C -0.263 4.263 9 C -0.011 4.011 10 H 0.151 0.849 11 C -0.195 4.195 12 C 0.301 3.699 13 O -0.420 6.420 14 O -0.265 6.265 15 C 0.052 3.948 16 C -0.177 4.177 17 C 0.059 3.941 18 N -0.334 5.334 19 C -0.393 4.393 20 H 0.092 0.908 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.210 1.210 25 H -0.221 1.221 26 H -0.191 1.191 27 C 0.017 3.983 28 C -0.151 4.151 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.010 0.990 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.093 0.907 49 H 0.111 0.889 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.482 10.018 22.231 27.393 hybrid contribution -0.151 -0.832 -1.556 1.771 sum 12.332 9.187 20.675 25.767 Atomic orbital electron populations 1.20282 0.86772 1.02900 1.03203 1.22288 0.97270 0.90534 0.97332 1.77233 0.87672 1.23337 1.28255 1.48618 1.05639 1.04825 1.57093 1.22163 0.83037 0.94724 1.04764 1.21403 0.97486 0.85007 0.99054 1.20698 0.91813 0.98444 1.04426 1.19263 0.92084 0.94435 1.20498 1.19251 0.98364 0.93218 0.90313 0.84924 1.21820 0.99633 1.03136 0.94880 1.24479 0.77736 0.79792 0.87931 1.90661 1.57660 1.46021 1.47676 1.86535 1.62299 1.33867 1.43840 1.22552 0.91345 0.99065 0.81874 1.22387 0.98252 1.00785 0.96293 1.20436 0.88847 0.91311 0.93518 1.44372 1.28763 1.28316 1.31929 1.19568 1.36579 0.92428 0.90743 0.90752 1.25897 1.02090 0.99640 0.97239 1.70200 1.51211 1.25689 1.11372 0.85230 0.77163 0.79722 0.78049 1.21019 1.22093 1.19110 1.21072 0.92116 0.98718 0.86431 1.22013 0.96068 0.98006 0.99027 0.88628 0.91784 0.91464 0.88941 0.87033 0.89605 0.89649 0.88376 0.87779 0.89290 0.92483 0.90130 0.92246 0.91396 0.93022 0.92109 0.99046 0.94090 0.96734 0.90727 0.88891 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 8.57 71.23 0.61 -1.24 16 2 C 0.09 2.56 6.53 43.10 0.28 2.84 16 3 N -0.34 -9.94 12.58 -47.39 -0.60 -10.54 16 4 N -0.38 -8.35 4.01 -356.03 -1.43 -9.78 16 5 C 0.09 1.08 11.09 127.77 1.42 2.50 16 6 C 0.10 2.01 6.93 41.40 0.29 2.29 16 7 C -0.10 -0.99 9.53 71.23 0.68 -0.31 16 8 C -0.25 -6.10 4.36 -20.14 -0.09 -6.19 16 9 C 0.01 0.18 2.99 -12.29 -0.04 0.14 16 10 H 0.13 2.11 6.79 -2.39 -0.02 2.09 16 11 C -0.14 -2.22 8.99 71.98 0.65 -1.57 16 12 C 0.46 13.75 6.27 71.24 0.45 14.20 16 13 O -0.53 -20.06 13.08 21.96 0.29 -19.77 16 14 O -0.35 -10.87 9.78 -51.43 -0.50 -11.37 16 15 C 0.11 3.89 2.41 30.63 0.07 3.96 16 16 C -0.14 -5.73 5.73 30.68 0.18 -5.55 16 17 C 0.19 9.46 5.30 86.36 0.46 9.92 16 18 N -0.61 -31.23 3.00 -699.10 -2.09 -33.32 16 19 C -0.26 -14.49 9.58 84.03 0.81 -13.68 16 20 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 21 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 22 N -0.94 -56.75 11.20 21.65 0.24 -56.51 16 23 Si 0.97 44.91 29.59 68.60 2.03 46.94 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.14 5.86 6.52 86.36 0.56 6.42 16 28 C -0.11 -3.78 5.75 30.67 0.18 -3.60 16 29 H 0.10 1.87 7.92 -2.38 -0.02 1.85 16 30 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.07 1.88 5.30 -2.39 -0.01 1.86 16 32 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.11 0.69 7.67 -2.39 -0.02 0.67 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.52 7.74 -2.39 -0.02 0.50 16 37 H 0.10 0.76 7.15 -2.38 -0.02 0.74 16 38 H 0.09 1.08 8.14 -2.38 -0.02 1.07 16 39 H 0.06 1.00 6.16 -2.39 -0.01 0.98 16 40 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 41 H 0.06 2.41 7.16 -2.39 -0.02 2.39 16 42 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 43 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.06 3.47 6.06 -2.39 -0.01 3.45 16 45 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 47 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.07 2.88 7.93 -2.39 -0.02 2.86 16 49 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 50 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -77.19 393.76 5.78 -71.41 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.93 Total: 15.42 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.91 Total: 7.53 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -3.88 Total: -110.15 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.22 Total: -31.15 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -77.19 5.78 -71.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770772078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.846 kcal (2) G-P(sol) polarization free energy of solvation -77.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds