Wall clock time and date at job start Tue Mar 31 2020 18:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21296 * 119.99961 * 2 1 4 4 N 1.34768 * 119.99658 * 179.97438 * 2 1 3 5 5 C 1.40148 * 119.99954 * 185.41138 * 4 2 1 6 6 C 1.38876 * 119.99843 * 24.53875 * 5 4 2 7 7 C 1.38037 * 120.00848 * 179.70155 * 6 5 4 8 8 C 1.38911 * 119.99370 * 0.61848 * 7 6 5 9 9 N 1.39892 * 120.00449 * 179.67588 * 8 7 6 10 10 C 1.46500 * 120.00040 * 359.72752 * 9 8 7 11 11 C 1.53002 * 109.47452 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46761 * 60.00079 * 11 10 9 13 13 O 1.42894 * 109.47053 * 300.00302 * 11 10 9 14 14 C 1.52996 * 109.47354 * 179.97438 * 11 10 9 15 15 N 1.46897 * 109.47115 * 185.58577 * 14 11 10 16 16 C 1.46899 * 110.99891 * 199.32126 * 15 14 11 17 17 C 1.46903 * 111.00137 * 75.36644 * 15 14 11 18 18 C 1.50697 * 109.47198 * 190.00145 * 17 15 14 19 19 H 1.08007 * 120.00221 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99984 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99931 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00103 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47276 * 89.99854 * 22 20 18 24 24 H 1.48499 * 109.47073 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46840 * 329.99872 * 22 20 18 26 26 C 1.38860 * 119.99101 * 359.40574 * 8 7 6 27 27 C 1.38084 * 119.99662 * 0.27276 * 26 8 7 28 28 C 1.50696 * 119.99914 * 180.02562 * 27 26 8 29 29 H 1.09007 * 109.47299 * 270.00547 * 1 2 3 30 30 H 1.09005 * 109.47282 * 29.99920 * 1 2 3 31 31 H 1.08999 * 109.47211 * 150.00325 * 1 2 3 32 32 H 0.96999 * 120.00454 * 5.40989 * 4 2 1 33 33 H 1.08006 * 119.99466 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.00412 * 180.32054 * 7 6 5 35 35 H 0.96996 * 120.00109 * 179.72558 * 9 8 7 36 36 H 1.09003 * 109.47073 * 60.00059 * 10 9 8 37 37 H 1.09001 * 109.47626 * 300.00353 * 10 9 8 38 38 H 0.96702 * 114.00196 * 299.99329 * 13 11 10 39 39 H 1.09002 * 109.46841 * 65.58946 * 14 11 10 40 40 H 1.08998 * 109.47325 * 305.58711 * 14 11 10 41 41 H 1.09002 * 109.47285 * 291.02751 * 16 15 14 42 42 H 1.08997 * 109.47739 * 51.03834 * 16 15 14 43 43 H 1.09005 * 109.47190 * 171.03753 * 16 15 14 44 44 H 1.09002 * 109.46567 * 309.99952 * 17 15 14 45 45 H 1.09004 * 109.46945 * 69.99984 * 17 15 14 46 46 H 0.97006 * 120.00328 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.00730 * 180.29761 * 26 8 7 48 48 H 1.09002 * 109.47647 * 90.00009 * 28 27 26 49 49 H 1.09004 * 109.47068 * 210.00162 * 28 27 26 50 50 H 1.09007 * 109.47136 * 329.99593 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5776 -1.1699 0.1150 6 6 4.2268 -0.1017 0.7201 7 6 5.6020 -0.1070 0.8384 8 6 6.3377 -1.1750 0.3408 9 7 7.7320 -1.1774 0.4545 10 6 8.4168 -0.0508 1.0933 11 6 9.9260 -0.3022 1.0886 12 1 10.2743 -0.4035 0.0607 13 8 10.2111 -1.5031 1.8087 14 6 10.6412 0.8747 1.7551 15 7 12.0943 0.6978 1.6322 16 6 12.8098 1.5193 2.6177 17 6 12.5477 0.9986 0.2676 18 6 13.9854 0.5750 0.1111 19 1 14.5101 0.1275 0.9424 20 6 14.6310 0.7587 -1.0932 21 7 15.8859 0.3895 -1.2296 22 14 13.7238 1.5333 -2.5307 23 1 13.9032 3.0069 -2.4931 24 1 14.2691 1.0005 -3.8051 25 1 12.2779 1.2080 -2.4366 26 6 5.6886 -2.2428 -0.2647 27 6 4.3123 -2.2402 -0.3770 28 6 3.6077 -3.3993 -1.0335 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6990 -2.0054 -0.0783 33 1 3.6551 0.7309 1.1028 34 1 6.1064 0.7214 1.3137 35 1 8.2454 -1.9251 0.1106 36 1 8.0689 0.0503 2.1213 37 1 8.1990 0.8654 0.5443 38 1 9.9279 -1.4841 2.7331 39 1 10.3681 0.9157 2.8096 40 1 10.3456 1.8032 1.2668 41 1 12.6999 2.5729 2.3609 42 1 12.3939 1.3416 3.6094 43 1 13.8668 1.2528 2.6140 44 1 11.9293 0.4570 -0.4483 45 1 12.4624 2.0697 0.0842 46 1 16.3403 0.5190 -2.0768 47 1 6.2600 -3.0755 -0.6474 48 1 3.3626 -4.1490 -0.2812 49 1 2.6914 -3.0465 -1.5069 50 1 4.2595 -3.8408 -1.7876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819401875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:31 Heat of formation + Delta-G solvation = -48.909814 kcal Electronic energy + Delta-G solvation = -28302.358474 eV Core-core repulsion = 24329.616945 eV Total energy + Delta-G solvation = -3972.741528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.82730 -39.18143 -38.19620 -36.30336 -35.45710 -33.96036 -32.53765 -32.45454 -31.06322 -30.01061 -28.40723 -27.86375 -26.75663 -25.60145 -23.44895 -23.19592 -21.88775 -20.78800 -20.66657 -20.02055 -18.00163 -17.39638 -16.98732 -16.84486 -16.32411 -15.87463 -15.77932 -15.27784 -14.71190 -14.64507 -14.49121 -14.16249 -14.09709 -13.80244 -13.70815 -13.47681 -13.27845 -13.14802 -13.00675 -12.87047 -12.75355 -12.65095 -12.31827 -12.08794 -12.06396 -11.60590 -11.41266 -11.34105 -11.15384 -10.93592 -10.76881 -10.69112 -10.14948 -10.06111 -9.90685 -9.76157 -9.32161 -9.24215 -8.82659 -8.57925 -7.40185 -7.16324 -6.05211 -4.02308 1.26742 1.39712 2.34393 2.81772 3.27048 3.34763 3.35863 3.36128 3.77959 4.33142 4.41034 4.47153 4.63220 4.66875 4.70795 4.76638 4.90286 5.04585 5.06889 5.14630 5.21487 5.26865 5.28792 5.29014 5.34063 5.40787 5.50346 5.53095 5.56144 5.66431 5.83957 5.86942 5.98325 6.04791 6.19051 6.22096 6.25650 6.34557 6.41440 6.63582 6.79076 6.80305 6.93341 7.14202 7.30247 7.57477 7.72152 7.81553 7.82303 7.95745 7.99936 8.64952 9.03902 9.56221 11.07980 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002041 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.582198 B =13713.895638 C =13939.475974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.504 3.496 3 O -0.529 6.529 4 N -0.664 5.664 5 C 0.074 3.926 6 C -0.075 4.075 7 C -0.186 4.186 8 C 0.213 3.787 9 N -0.738 5.738 10 C 0.093 3.907 11 C 0.103 3.897 12 H 0.107 0.893 13 O -0.539 6.539 14 C 0.025 3.975 15 N -0.522 5.522 16 C 0.040 3.960 17 C 0.161 3.839 18 C -0.507 4.507 19 H 0.081 0.919 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.268 1.268 26 C -0.180 4.180 27 C -0.067 4.067 28 C -0.114 4.114 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.407 0.593 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.405 0.595 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.366 0.634 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.013 0.987 42 H 0.046 0.954 43 H 0.078 0.922 44 H 0.027 0.973 45 H -0.017 1.017 46 H 0.263 0.737 47 H 0.124 0.876 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.015 -5.260 4.761 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.406 6.406 4 N -0.310 5.310 5 C -0.021 4.021 6 C -0.096 4.096 7 C -0.210 4.210 8 C 0.109 3.891 9 N -0.367 5.367 10 C -0.033 4.033 11 C 0.043 3.957 12 H 0.125 0.875 13 O -0.343 6.343 14 C -0.105 4.105 15 N -0.245 5.245 16 C -0.108 4.108 17 C 0.035 3.965 18 C -0.545 4.545 19 H 0.099 0.901 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.193 1.193 26 C -0.203 4.203 27 C -0.070 4.070 28 C -0.171 4.171 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.243 0.757 33 H 0.159 0.841 34 H 0.140 0.860 35 H 0.241 0.759 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.212 0.788 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.045 0.955 45 H 0.000 1.000 46 H 0.073 0.927 47 H 0.142 0.858 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -31.034 -4.989 4.250 31.719 hybrid contribution -0.776 0.878 -0.742 1.387 sum -31.810 -4.112 3.508 32.266 Atomic orbital electron populations 1.21889 0.91089 1.05103 1.05001 1.20947 0.90761 0.83317 0.75736 1.90709 1.70257 1.31450 1.48148 1.43535 1.05604 1.09436 1.72384 1.17323 0.82147 0.97657 1.04956 1.21095 0.93916 0.97960 0.96605 1.20563 0.93569 0.99338 1.07487 1.17861 0.83815 0.93632 0.93802 1.44625 1.02656 1.23711 1.65734 1.22075 0.93630 0.89969 0.97599 1.22132 0.89892 0.85715 0.97943 0.87508 1.86675 1.84685 1.36459 1.26438 1.22674 0.91679 0.96251 0.99888 1.61869 1.00744 1.55122 1.06780 1.22233 1.00825 0.94060 0.93730 1.20260 0.97602 0.93422 0.85228 1.21011 0.94058 1.40155 0.99296 0.90101 1.24904 0.94768 0.95376 0.98332 1.69891 1.10412 1.47965 1.25601 0.86879 0.80542 0.79763 0.82637 1.20373 1.21080 1.19299 1.20232 0.93180 0.99471 1.07441 1.19268 0.93014 0.95804 0.98868 1.20733 1.00219 0.95859 1.00306 0.88569 0.88598 0.90119 0.75745 0.84053 0.85975 0.75891 0.92128 0.91608 0.78801 0.91372 0.94697 0.96857 0.93525 0.90294 0.95485 0.99958 0.92667 0.85831 0.91077 0.92020 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.31 36.01 0.37 -0.29 16 2 C 0.50 4.35 7.75 -10.99 -0.09 4.26 16 3 O -0.53 -7.00 14.24 5.54 0.08 -6.92 16 4 N -0.66 -5.10 4.98 -9.82 -0.05 -5.15 16 5 C 0.07 0.79 6.42 -83.60 -0.54 0.26 16 6 C -0.08 -0.93 8.72 -39.42 -0.34 -1.28 16 7 C -0.19 -2.30 9.31 -39.41 -0.37 -2.66 16 8 C 0.21 2.59 6.66 -83.70 -0.56 2.03 16 9 N -0.74 -8.80 5.63 -58.58 -0.33 -9.13 16 10 C 0.09 1.09 4.58 -4.04 -0.02 1.07 16 11 C 0.10 1.50 3.14 -26.73 -0.08 1.42 16 12 H 0.11 1.85 6.62 -51.93 -0.34 1.51 16 13 O -0.54 -8.07 13.04 -35.23 -0.46 -8.53 16 14 C 0.02 0.39 4.63 -3.83 -0.02 0.37 16 15 N -0.52 -10.67 4.64 -244.37 -1.13 -11.81 16 16 C 0.04 0.75 9.31 60.06 0.56 1.31 16 17 C 0.16 3.90 3.62 -4.98 -0.02 3.88 16 18 C -0.51 -14.53 9.13 -34.44 -0.31 -14.84 16 19 H 0.08 2.53 7.34 -52.48 -0.39 2.14 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 22 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 26 C -0.18 -1.97 9.54 -39.41 -0.38 -2.35 16 27 C -0.07 -0.66 5.89 -104.46 -0.62 -1.27 16 28 C -0.11 -0.73 9.44 36.00 0.34 -0.39 16 29 H 0.10 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.41 1.71 7.38 -40.82 -0.30 1.41 16 33 H 0.14 1.87 5.76 -52.48 -0.30 1.56 16 34 H 0.12 1.41 6.73 -52.49 -0.35 1.05 16 35 H 0.41 4.85 8.36 -40.82 -0.34 4.51 16 36 H 0.06 0.63 7.94 -51.93 -0.41 0.22 16 37 H 0.07 0.79 7.96 -51.93 -0.41 0.37 16 38 H 0.37 4.12 9.05 45.56 0.41 4.53 16 39 H 0.07 0.89 7.76 -51.93 -0.40 0.49 16 40 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 41 H 0.01 0.24 8.08 -51.93 -0.42 -0.18 16 42 H 0.05 0.72 7.86 -51.93 -0.41 0.31 16 43 H 0.08 1.65 7.01 -51.93 -0.36 1.29 16 44 H 0.03 0.66 5.59 -51.93 -0.29 0.37 16 45 H -0.02 -0.42 7.50 -51.93 -0.39 -0.81 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.31 6.97 -51.93 -0.36 -0.05 16 50 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -35.61 401.57 -9.09 -44.70 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.19 Total: 7.31 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.16 Total: -6.60 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.74 Total: -53.08 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.38 Total: -15.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.61 -9.09 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819401875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.207 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds