Wall clock time and date at job start Tue Mar 31 2020 18:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21296 * 119.99961 * 2 1 4 4 N 1.34768 * 119.99658 * 179.97438 * 2 1 3 5 5 C 1.40148 * 119.99954 * 185.41138 * 4 2 1 6 6 C 1.38876 * 119.99843 * 24.53875 * 5 4 2 7 7 C 1.38037 * 120.00848 * 179.70155 * 6 5 4 8 8 C 1.38911 * 119.99370 * 0.61848 * 7 6 5 9 9 N 1.39892 * 120.00449 * 179.67588 * 8 7 6 10 10 C 1.46500 * 120.00040 * 359.72752 * 9 8 7 11 11 C 1.53002 * 109.47452 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.46761 * 60.00079 * 11 10 9 13 13 O 1.42894 * 109.47053 * 300.00302 * 11 10 9 14 14 C 1.52996 * 109.47354 * 179.97438 * 11 10 9 15 15 N 1.46897 * 109.47115 * 185.58577 * 14 11 10 16 16 C 1.46899 * 110.99891 * 199.32126 * 15 14 11 17 17 C 1.46903 * 111.00137 * 75.36644 * 15 14 11 18 18 C 1.50697 * 109.47198 * 190.00145 * 17 15 14 19 19 H 1.08007 * 120.00221 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99984 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99931 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00103 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47276 * 89.99854 * 22 20 18 24 24 H 1.48499 * 109.47073 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46840 * 329.99872 * 22 20 18 26 26 C 1.38860 * 119.99101 * 359.40574 * 8 7 6 27 27 C 1.38084 * 119.99662 * 0.27276 * 26 8 7 28 28 C 1.50696 * 119.99914 * 180.02562 * 27 26 8 29 29 H 1.09007 * 109.47299 * 270.00547 * 1 2 3 30 30 H 1.09005 * 109.47282 * 29.99920 * 1 2 3 31 31 H 1.08999 * 109.47211 * 150.00325 * 1 2 3 32 32 H 0.96999 * 120.00454 * 5.40989 * 4 2 1 33 33 H 1.08006 * 119.99466 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.00412 * 180.32054 * 7 6 5 35 35 H 0.96996 * 120.00109 * 179.72558 * 9 8 7 36 36 H 1.09003 * 109.47073 * 60.00059 * 10 9 8 37 37 H 1.09001 * 109.47626 * 300.00353 * 10 9 8 38 38 H 0.96702 * 114.00196 * 299.99329 * 13 11 10 39 39 H 1.09002 * 109.46841 * 65.58946 * 14 11 10 40 40 H 1.08998 * 109.47325 * 305.58711 * 14 11 10 41 41 H 1.09002 * 109.47285 * 291.02751 * 16 15 14 42 42 H 1.08997 * 109.47739 * 51.03834 * 16 15 14 43 43 H 1.09005 * 109.47190 * 171.03753 * 16 15 14 44 44 H 1.09002 * 109.46567 * 309.99952 * 17 15 14 45 45 H 1.09004 * 109.46945 * 69.99984 * 17 15 14 46 46 H 0.97006 * 120.00328 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.00730 * 180.29761 * 26 8 7 48 48 H 1.09002 * 109.47647 * 90.00009 * 28 27 26 49 49 H 1.09004 * 109.47068 * 210.00162 * 28 27 26 50 50 H 1.09007 * 109.47136 * 329.99593 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5776 -1.1699 0.1150 6 6 4.2268 -0.1017 0.7201 7 6 5.6020 -0.1070 0.8384 8 6 6.3377 -1.1750 0.3408 9 7 7.7320 -1.1774 0.4545 10 6 8.4168 -0.0508 1.0933 11 6 9.9260 -0.3022 1.0886 12 1 10.2743 -0.4035 0.0607 13 8 10.2111 -1.5031 1.8087 14 6 10.6412 0.8747 1.7551 15 7 12.0943 0.6978 1.6322 16 6 12.8098 1.5193 2.6177 17 6 12.5477 0.9986 0.2676 18 6 13.9854 0.5750 0.1111 19 1 14.5101 0.1275 0.9424 20 6 14.6310 0.7587 -1.0932 21 7 15.8859 0.3895 -1.2296 22 14 13.7238 1.5333 -2.5307 23 1 13.9032 3.0069 -2.4931 24 1 14.2691 1.0005 -3.8051 25 1 12.2779 1.2080 -2.4366 26 6 5.6886 -2.2428 -0.2647 27 6 4.3123 -2.2402 -0.3770 28 6 3.6077 -3.3993 -1.0335 29 1 -0.3634 0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6990 -2.0054 -0.0783 33 1 3.6551 0.7309 1.1028 34 1 6.1064 0.7214 1.3137 35 1 8.2454 -1.9251 0.1106 36 1 8.0689 0.0503 2.1213 37 1 8.1990 0.8654 0.5443 38 1 9.9279 -1.4841 2.7331 39 1 10.3681 0.9157 2.8096 40 1 10.3456 1.8032 1.2668 41 1 12.6999 2.5729 2.3609 42 1 12.3939 1.3416 3.6094 43 1 13.8668 1.2528 2.6140 44 1 11.9293 0.4570 -0.4483 45 1 12.4624 2.0697 0.0842 46 1 16.3403 0.5190 -2.0768 47 1 6.2600 -3.0755 -0.6474 48 1 3.3626 -4.1490 -0.2812 49 1 2.6914 -3.0465 -1.5069 50 1 4.2595 -3.8408 -1.7876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819401875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:30 Heat of formation + Delta-G solvation = -77.856976 kcal Electronic energy + Delta-G solvation = -28303.613717 eV Core-core repulsion = 24329.616945 eV Total energy + Delta-G solvation = -3973.996771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.56408 -40.08145 -39.33888 -37.54520 -36.54919 -34.77920 -34.61700 -33.28783 -31.92963 -30.85374 -30.01709 -29.02585 -27.47989 -26.79541 -25.09399 -24.01147 -23.14470 -21.77679 -21.51392 -21.33490 -19.08335 -18.73972 -18.18081 -17.62165 -17.48471 -17.09588 -16.52366 -16.45885 -16.25566 -15.92484 -15.51570 -15.37100 -15.02238 -14.84811 -14.64388 -14.54522 -14.44461 -14.28409 -14.05403 -13.91914 -13.63653 -13.28523 -13.25015 -13.14212 -13.08979 -12.82341 -12.69134 -12.64486 -12.53613 -12.28345 -12.09823 -11.85185 -11.76462 -11.64550 -11.46371 -10.89825 -10.81616 -10.80896 -10.12984 -9.63413 -8.99886 -8.30386 -8.01367 -6.33192 0.45746 0.54416 1.30460 1.32574 1.42711 1.67870 2.22739 2.31030 2.42136 2.94540 3.02022 3.18734 3.59593 3.80908 3.84200 3.96242 4.00083 4.04040 4.23427 4.34914 4.38513 4.43686 4.49741 4.54779 4.56968 4.57019 4.66167 4.66835 4.70482 4.74640 4.84755 4.87917 4.97239 5.01038 5.09721 5.12783 5.13292 5.18981 5.32931 5.35841 5.53258 5.55263 5.60331 5.94771 5.99029 6.34212 6.42380 6.55587 6.63275 6.73167 6.81361 6.97872 7.22124 7.29930 8.86415 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002041 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.582198 B =13713.895638 C =13939.475974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.496 3.504 3 O -0.583 6.583 4 N -0.653 5.653 5 C 0.067 3.933 6 C -0.094 4.094 7 C -0.200 4.200 8 C 0.200 3.800 9 N -0.740 5.740 10 C 0.106 3.894 11 C 0.113 3.887 12 H 0.076 0.924 13 O -0.557 6.557 14 C 0.025 3.975 15 N -0.541 5.541 16 C 0.043 3.957 17 C 0.172 3.828 18 C -0.515 4.515 19 H 0.037 0.963 20 C 0.007 3.993 21 N -0.947 5.947 22 Si 0.945 3.055 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.251 1.251 26 C -0.188 4.188 27 C -0.065 4.065 28 C -0.113 4.113 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.425 0.575 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.383 0.617 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.018 0.982 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.027 0.973 45 H -0.015 1.015 46 H 0.267 0.733 47 H 0.135 0.865 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.739 -5.776 4.474 36.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.287 3.713 3 O -0.463 6.463 4 N -0.299 5.299 5 C -0.029 4.029 6 C -0.115 4.115 7 C -0.223 4.223 8 C 0.096 3.904 9 N -0.370 5.370 10 C -0.020 4.020 11 C 0.053 3.947 12 H 0.094 0.906 13 O -0.363 6.363 14 C -0.104 4.104 15 N -0.265 5.265 16 C -0.105 4.105 17 C 0.045 3.955 18 C -0.553 4.553 19 H 0.055 0.945 20 C -0.191 4.191 21 N -0.588 5.588 22 Si 0.768 3.232 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.175 1.175 26 C -0.212 4.212 27 C -0.068 4.068 28 C -0.170 4.170 29 H 0.131 0.869 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.264 0.736 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.002 0.998 46 H 0.076 0.924 47 H 0.153 0.847 48 H 0.108 0.892 49 H 0.096 0.904 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -34.814 -5.542 3.994 35.478 hybrid contribution 0.371 0.951 -0.541 1.155 sum -34.443 -4.591 3.454 34.919 Atomic orbital electron populations 1.21916 0.87044 1.06605 1.06496 1.21883 0.92648 0.82550 0.74201 1.90690 1.71678 1.33328 1.50586 1.43517 1.04510 1.10340 1.71534 1.17492 0.83718 0.97303 1.04339 1.21114 0.94121 0.98473 0.97791 1.20622 0.93741 0.99732 1.08185 1.17976 0.83775 0.94104 0.94497 1.44578 1.02656 1.23679 1.66104 1.21906 0.91515 0.89858 0.98698 1.21897 0.91426 0.85195 0.96182 0.90632 1.86635 1.85098 1.36684 1.27905 1.22804 0.88371 0.96954 1.02288 1.61724 1.03826 1.55960 1.04952 1.22199 0.99066 0.93988 0.95292 1.19982 0.94673 0.93068 0.87805 1.21272 0.96366 1.39545 0.98116 0.94494 1.25848 0.95580 0.96012 1.01623 1.70049 1.12356 1.49742 1.26668 0.85750 0.79894 0.79079 0.78434 1.19197 1.20597 1.17494 1.20512 0.93959 0.99489 1.07194 1.19637 0.92781 0.96449 0.97946 1.20818 1.00548 0.94863 1.00726 0.86890 0.88832 0.86870 0.73559 0.85461 0.85863 0.76060 0.90262 0.91705 0.76848 0.88049 0.93927 0.96379 0.89720 0.93753 0.95528 0.99760 0.92444 0.84711 0.89186 0.90446 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.31 71.24 0.73 -0.08 16 2 C 0.50 7.95 7.75 87.66 0.68 8.63 16 3 O -0.58 -15.62 14.24 -3.08 -0.04 -15.66 16 4 N -0.65 -8.77 4.98 -303.36 -1.51 -10.28 16 5 C 0.07 1.36 6.42 38.11 0.24 1.61 16 6 C -0.09 -2.36 8.72 22.37 0.20 -2.16 16 7 C -0.20 -4.90 9.31 22.38 0.21 -4.69 16 8 C 0.20 4.71 6.66 38.16 0.25 4.97 16 9 N -0.74 -16.98 5.63 -339.26 -1.91 -18.89 16 10 C 0.11 2.33 4.58 86.38 0.40 2.73 16 11 C 0.11 3.16 3.14 30.59 0.10 3.25 16 12 H 0.08 2.60 6.62 -2.39 -0.02 2.58 16 13 O -0.56 -16.01 13.04 -148.98 -1.94 -17.95 16 14 C 0.02 0.72 4.63 86.30 0.40 1.12 16 15 N -0.54 -21.80 4.64 -927.05 -4.30 -26.10 16 16 C 0.04 1.57 9.31 127.69 1.19 2.76 16 17 C 0.17 8.31 3.62 85.56 0.31 8.62 16 18 C -0.51 -30.43 9.13 25.60 0.23 -30.19 16 19 H 0.04 2.44 7.34 -2.91 -0.02 2.42 16 20 C 0.01 0.39 5.47 84.65 0.46 0.85 16 21 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 22 Si 0.94 45.01 27.47 68.60 1.88 46.90 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 25 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 26 C -0.19 -3.89 9.54 22.38 0.21 -3.67 16 27 C -0.07 -1.16 5.89 -19.76 -0.12 -1.28 16 28 C -0.11 -1.09 9.44 71.23 0.67 -0.42 16 29 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.09 0.57 8.14 -2.38 -0.02 0.56 16 31 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.43 2.25 7.38 -92.71 -0.68 1.57 16 33 H 0.13 3.52 5.76 -2.91 -0.02 3.50 16 34 H 0.12 2.83 6.73 -2.91 -0.02 2.81 16 35 H 0.40 9.40 8.36 -92.71 -0.78 8.63 16 36 H 0.08 1.47 7.94 -2.39 -0.02 1.45 16 37 H 0.06 1.46 7.96 -2.39 -0.02 1.44 16 38 H 0.38 7.85 9.05 -74.06 -0.67 7.18 16 39 H 0.10 2.30 7.76 -2.39 -0.02 2.28 16 40 H 0.04 1.21 8.00 -2.39 -0.02 1.19 16 41 H 0.02 0.63 8.08 -2.39 -0.02 0.62 16 42 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 43 H 0.04 1.91 7.01 -2.38 -0.02 1.90 16 44 H 0.03 1.30 5.59 -2.39 -0.01 1.28 16 45 H -0.02 -0.72 7.50 -2.38 -0.02 -0.74 16 46 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 47 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 48 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.08 0.51 6.97 -2.38 -0.02 0.49 16 50 H 0.08 0.72 8.09 -2.38 -0.02 0.70 16 Total: -1.00 -81.49 401.57 -2.56 -84.05 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -1.21 Total: 25.89 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 6.17 Total: -7.95 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -7.43 Total: -115.29 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.99 Total: -33.61 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -81.49 -2.56 -84.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819401875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.197 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds