Wall clock time and date at job start Tue Mar 31 2020 18:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21296 * 119.99879 * 2 1 4 4 N 1.34776 * 120.00043 * 180.02562 * 2 1 3 5 5 C 1.40151 * 120.00266 * 185.70941 * 4 2 1 6 6 C 1.38870 * 119.98994 * 24.79472 * 5 4 2 7 7 C 1.38049 * 119.99956 * 179.69958 * 6 5 4 8 8 C 1.38898 * 119.99594 * 0.61512 * 7 6 5 9 9 N 1.39890 * 120.00649 * 179.67853 * 8 7 6 10 10 C 1.46501 * 120.00050 * 359.72654 * 9 8 7 11 11 C 1.53001 * 109.47132 * 179.97438 * 10 9 8 12 12 H 1.08992 * 109.47274 * 305.00506 * 11 10 9 13 13 O 1.42901 * 109.46945 * 65.00442 * 11 10 9 14 14 C 1.52999 * 109.46746 * 184.99823 * 11 10 9 15 15 N 1.46904 * 109.46661 * 175.18226 * 14 11 10 16 16 C 1.46904 * 110.99645 * 174.44755 * 15 14 11 17 17 C 1.46900 * 111.00104 * 298.39770 * 15 14 11 18 18 C 1.50706 * 109.46915 * 170.00136 * 17 15 14 19 19 H 1.07992 * 120.00040 * 0.02562 * 18 17 15 20 20 C 1.37875 * 119.99679 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00074 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00294 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47341 * 89.99922 * 22 20 18 24 24 H 1.48500 * 109.47370 * 210.00141 * 22 20 18 25 25 H 1.48496 * 109.46994 * 330.00192 * 22 20 18 26 26 C 1.38875 * 119.99002 * 359.40658 * 8 7 6 27 27 C 1.38082 * 119.99544 * 0.27473 * 26 8 7 28 28 C 1.50695 * 119.99787 * 179.97438 * 27 26 8 29 29 H 1.09005 * 109.47181 * 239.99884 * 1 2 3 30 30 H 1.09010 * 109.47125 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47713 * 119.99546 * 1 2 3 32 32 H 0.97000 * 119.99634 * 5.71769 * 4 2 1 33 33 H 1.07999 * 120.00111 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.00054 * 180.32503 * 7 6 5 35 35 H 0.97003 * 120.00191 * 179.72900 * 9 8 7 36 36 H 1.09005 * 109.46863 * 60.00237 * 10 9 8 37 37 H 1.08997 * 109.46879 * 300.00098 * 10 9 8 38 38 H 0.96703 * 113.99986 * 59.99476 * 13 11 10 39 39 H 1.08998 * 109.47862 * 295.17875 * 14 11 10 40 40 H 1.09003 * 109.47349 * 55.18682 * 14 11 10 41 41 H 1.09002 * 109.47076 * 65.02150 * 16 15 14 42 42 H 1.09000 * 109.47070 * 185.01224 * 16 15 14 43 43 H 1.09000 * 109.47423 * 305.01514 * 16 15 14 44 44 H 1.08994 * 109.47214 * 290.00080 * 17 15 14 45 45 H 1.08998 * 109.46650 * 50.00774 * 17 15 14 46 46 H 0.96999 * 120.00801 * 180.02562 * 21 20 18 47 47 H 1.07997 * 119.99977 * 180.25079 * 26 8 7 48 48 H 1.08999 * 109.47401 * 89.99948 * 28 27 26 49 49 H 1.08996 * 109.47238 * 209.99780 * 28 27 26 50 50 H 1.09006 * 109.47575 * 330.00053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5772 -1.1703 0.1202 6 6 4.2230 -0.1067 0.7367 7 6 5.5978 -0.1124 0.8613 8 6 6.3361 -1.1761 0.3586 9 7 7.7299 -1.1790 0.4787 10 6 8.4113 -0.0572 1.1295 11 6 9.9206 -0.3081 1.1297 12 1 10.1287 -1.2718 1.5945 13 8 10.4026 -0.3142 -0.2156 14 6 10.6217 0.8003 1.9176 15 7 12.0561 0.4988 2.0161 16 6 12.7841 1.6051 2.6518 17 6 12.2808 -0.7618 2.7361 18 6 13.7276 -1.1633 2.6064 19 1 14.4117 -0.5438 2.0457 20 6 14.1778 -2.3215 3.2037 21 7 15.4402 -2.6722 3.0902 22 14 12.9943 -3.3935 4.1731 23 1 12.3778 -4.3953 3.2665 24 1 13.7327 -4.0932 5.2549 25 1 11.9314 -2.5444 4.7683 26 6 5.6901 -2.2395 -0.2583 27 6 4.3144 -2.2364 -0.3768 28 6 3.6134 -3.3900 -1.0467 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0278 0.0005 31 1 -0.3634 -0.5137 -0.8900 32 1 1.6994 -2.0051 -0.0846 33 1 3.6492 0.7226 1.1234 34 1 6.0996 0.7123 1.3454 35 1 8.2451 -1.9237 0.1312 36 1 8.0587 0.0356 2.1567 37 1 8.1957 0.8631 0.5867 38 1 10.2510 0.5139 -0.6914 39 1 10.4850 1.7526 1.4052 40 1 10.1937 0.8613 2.9182 41 1 12.4537 1.7111 3.6852 42 1 13.8535 1.3952 2.6321 43 1 12.5852 2.5298 2.1101 44 1 12.0340 -0.6277 3.7892 45 1 11.6481 -1.5408 2.3108 46 1 15.7570 -3.4873 3.5100 47 1 6.2637 -3.0685 -0.6456 48 1 3.3652 -4.1463 -0.3021 49 1 2.6991 -3.0336 -1.5211 50 1 4.2687 -3.8247 -1.8015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819401876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:35 Heat of formation + Delta-G solvation = -47.217492 kcal Electronic energy + Delta-G solvation = -28381.879311 eV Core-core repulsion = 24409.211167 eV Total energy + Delta-G solvation = -3972.668144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82475 -39.18981 -38.24332 -36.29801 -35.42753 -33.96480 -32.53973 -32.45174 -31.05523 -29.99282 -28.39326 -27.90682 -26.75872 -25.59927 -23.41591 -23.20390 -22.00797 -20.79398 -20.65793 -19.92053 -18.00404 -17.39244 -17.01758 -16.86003 -16.31106 -15.93116 -15.71540 -15.26898 -14.66477 -14.64570 -14.54504 -14.22504 -14.05192 -13.78993 -13.70834 -13.49337 -13.27701 -13.14031 -13.08104 -12.87135 -12.69397 -12.64197 -12.34348 -12.14587 -12.01393 -11.58438 -11.47106 -11.35943 -11.14185 -10.92426 -10.81546 -10.52742 -10.17372 -10.07664 -9.91558 -9.74975 -9.32337 -9.24362 -8.82598 -8.56321 -7.39483 -7.16473 -6.05041 -4.01807 1.26917 1.39628 2.34041 2.81538 3.26685 3.34068 3.34677 3.35757 3.77854 4.32609 4.40707 4.46104 4.63645 4.67821 4.75797 4.77098 4.86967 5.03997 5.06152 5.13214 5.21300 5.27312 5.28681 5.29433 5.33468 5.38597 5.51786 5.53363 5.56185 5.66578 5.83600 5.86471 5.99420 6.04664 6.18841 6.20223 6.25097 6.34647 6.41287 6.63539 6.79330 6.82165 6.94073 7.14094 7.30226 7.56902 7.71513 7.81806 7.82477 7.96230 8.00256 8.65317 9.03955 9.56366 11.08215 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.002108 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.284521 B =13280.121526 C =14055.447468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.504 3.496 3 O -0.529 6.529 4 N -0.665 5.665 5 C 0.075 3.925 6 C -0.075 4.075 7 C -0.186 4.186 8 C 0.213 3.787 9 N -0.738 5.738 10 C 0.094 3.906 11 C 0.098 3.902 12 H 0.109 0.891 13 O -0.538 6.538 14 C 0.026 3.974 15 N -0.522 5.522 16 C 0.038 3.962 17 C 0.159 3.841 18 C -0.506 4.506 19 H 0.081 0.919 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.873 3.127 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.269 1.269 26 C -0.180 4.180 27 C -0.066 4.066 28 C -0.114 4.114 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.407 0.593 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.368 0.632 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.012 0.988 42 H 0.080 0.920 43 H 0.047 0.953 44 H -0.014 1.014 45 H 0.026 0.974 46 H 0.263 0.737 47 H 0.124 0.876 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.902 2.442 -6.406 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.293 3.707 3 O -0.405 6.405 4 N -0.310 5.310 5 C -0.020 4.020 6 C -0.095 4.095 7 C -0.209 4.209 8 C 0.109 3.891 9 N -0.368 5.368 10 C -0.032 4.032 11 C 0.038 3.962 12 H 0.127 0.873 13 O -0.342 6.342 14 C -0.104 4.104 15 N -0.245 5.245 16 C -0.110 4.110 17 C 0.033 3.967 18 C -0.544 4.544 19 H 0.099 0.901 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.700 3.300 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.194 1.194 26 C -0.203 4.203 27 C -0.069 4.069 28 C -0.171 4.171 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.243 0.757 33 H 0.159 0.841 34 H 0.140 0.860 35 H 0.240 0.760 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.214 0.786 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.030 0.970 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.004 0.996 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.142 0.858 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.939 2.584 -6.546 30.755 hybrid contribution -1.033 -0.715 1.172 1.718 sum -30.972 1.869 -5.374 31.490 Atomic orbital electron populations 1.21929 0.91083 1.05894 1.04389 1.20947 0.90764 0.83301 0.75724 1.90707 1.70361 1.31440 1.48022 1.43496 1.05648 1.09471 1.72431 1.17311 0.82148 0.97753 1.04805 1.21071 0.93937 0.97976 0.96551 1.20555 0.93554 0.99473 1.07349 1.17858 0.83805 0.93648 0.93798 1.44647 1.02716 1.24200 1.65220 1.22087 0.93634 0.89820 0.97665 1.22223 0.88704 1.01049 0.84200 0.87312 1.86687 1.83414 1.40184 1.23870 1.22668 0.91500 0.97764 0.98461 1.61902 1.05117 1.04025 1.53487 1.22232 1.00994 0.92590 0.95182 1.20268 0.98646 0.87183 0.90621 1.21005 0.92605 1.08046 1.32756 0.90124 1.24898 0.94982 0.97350 0.96140 1.69887 1.14359 1.24688 1.44971 0.86901 0.81594 0.81158 0.80338 1.20100 1.21150 1.19391 1.20241 0.93226 0.99550 1.07298 1.19265 0.92994 0.95858 0.98826 1.20731 1.00235 0.95922 1.00230 0.89158 0.88654 0.89279 0.75741 0.84119 0.85969 0.75951 0.91640 0.92007 0.78634 0.91207 0.95055 0.96970 0.90103 0.93442 0.99625 0.95571 0.92677 0.85826 0.91077 0.92011 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.32 36.00 0.37 -0.29 16 2 C 0.50 4.33 7.74 -10.99 -0.09 4.24 16 3 O -0.53 -6.92 14.26 5.54 0.08 -6.84 16 4 N -0.67 -5.12 4.98 -9.82 -0.05 -5.17 16 5 C 0.07 0.80 6.41 -83.60 -0.54 0.27 16 6 C -0.07 -0.93 8.71 -39.42 -0.34 -1.27 16 7 C -0.19 -2.30 9.31 -39.41 -0.37 -2.67 16 8 C 0.21 2.61 6.66 -83.70 -0.56 2.06 16 9 N -0.74 -8.95 5.69 -58.58 -0.33 -9.28 16 10 C 0.09 1.11 4.55 -4.04 -0.02 1.09 16 11 C 0.10 1.45 2.88 -26.73 -0.08 1.37 16 12 H 0.11 1.88 6.01 -51.93 -0.31 1.57 16 13 O -0.54 -8.36 13.23 -35.23 -0.47 -8.83 16 14 C 0.03 0.40 4.62 -3.82 -0.02 0.39 16 15 N -0.52 -10.70 4.73 -244.36 -1.16 -11.85 16 16 C 0.04 0.72 9.35 60.07 0.56 1.29 16 17 C 0.16 3.83 3.63 -4.97 -0.02 3.81 16 18 C -0.51 -14.48 9.08 -34.44 -0.31 -14.80 16 19 H 0.08 2.52 7.34 -52.49 -0.39 2.13 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 22 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 26 C -0.18 -2.00 9.54 -39.40 -0.38 -2.37 16 27 C -0.07 -0.66 5.89 -104.47 -0.62 -1.28 16 28 C -0.11 -0.74 9.44 36.00 0.34 -0.40 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.40 8.12 -51.92 -0.42 -0.02 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.41 1.75 7.40 -40.82 -0.30 1.45 16 33 H 0.14 1.85 5.79 -52.49 -0.30 1.55 16 34 H 0.12 1.41 6.73 -52.49 -0.35 1.05 16 35 H 0.40 4.95 8.49 -40.82 -0.35 4.60 16 36 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 37 H 0.06 0.67 7.96 -51.93 -0.41 0.25 16 38 H 0.37 4.36 9.05 45.56 0.41 4.77 16 39 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 1.70 6.89 -51.93 -0.36 1.34 16 43 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 44 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 45 H 0.03 0.64 5.23 -51.93 -0.27 0.36 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.31 6.97 -51.93 -0.36 -0.05 16 50 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -35.63 401.09 -9.09 -44.72 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.16 Total: 7.97 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.15 Total: -6.70 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.77 Total: -53.28 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.39 Total: -15.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.63 -9.09 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819401876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.499 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds