Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21296 * 119.99879 * 2 1 4 4 N 1.34776 * 120.00043 * 180.02562 * 2 1 3 5 5 C 1.40151 * 120.00266 * 185.70941 * 4 2 1 6 6 C 1.38870 * 119.98994 * 24.79472 * 5 4 2 7 7 C 1.38049 * 119.99956 * 179.69958 * 6 5 4 8 8 C 1.38898 * 119.99594 * 0.61512 * 7 6 5 9 9 N 1.39890 * 120.00649 * 179.67853 * 8 7 6 10 10 C 1.46501 * 120.00050 * 359.72654 * 9 8 7 11 11 C 1.53001 * 109.47132 * 179.97438 * 10 9 8 12 12 H 1.08992 * 109.47274 * 305.00506 * 11 10 9 13 13 O 1.42901 * 109.46945 * 65.00442 * 11 10 9 14 14 C 1.52999 * 109.46746 * 184.99823 * 11 10 9 15 15 N 1.46904 * 109.46661 * 175.18226 * 14 11 10 16 16 C 1.46904 * 110.99645 * 174.44755 * 15 14 11 17 17 C 1.46900 * 111.00104 * 298.39770 * 15 14 11 18 18 C 1.50706 * 109.46915 * 170.00136 * 17 15 14 19 19 H 1.07992 * 120.00040 * 0.02562 * 18 17 15 20 20 C 1.37875 * 119.99679 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00074 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00294 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47341 * 89.99922 * 22 20 18 24 24 H 1.48500 * 109.47370 * 210.00141 * 22 20 18 25 25 H 1.48496 * 109.46994 * 330.00192 * 22 20 18 26 26 C 1.38875 * 119.99002 * 359.40658 * 8 7 6 27 27 C 1.38082 * 119.99544 * 0.27473 * 26 8 7 28 28 C 1.50695 * 119.99787 * 179.97438 * 27 26 8 29 29 H 1.09005 * 109.47181 * 239.99884 * 1 2 3 30 30 H 1.09010 * 109.47125 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47713 * 119.99546 * 1 2 3 32 32 H 0.97000 * 119.99634 * 5.71769 * 4 2 1 33 33 H 1.07999 * 120.00111 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.00054 * 180.32503 * 7 6 5 35 35 H 0.97003 * 120.00191 * 179.72900 * 9 8 7 36 36 H 1.09005 * 109.46863 * 60.00237 * 10 9 8 37 37 H 1.08997 * 109.46879 * 300.00098 * 10 9 8 38 38 H 0.96703 * 113.99986 * 59.99476 * 13 11 10 39 39 H 1.08998 * 109.47862 * 295.17875 * 14 11 10 40 40 H 1.09003 * 109.47349 * 55.18682 * 14 11 10 41 41 H 1.09002 * 109.47076 * 65.02150 * 16 15 14 42 42 H 1.09000 * 109.47070 * 185.01224 * 16 15 14 43 43 H 1.09000 * 109.47423 * 305.01514 * 16 15 14 44 44 H 1.08994 * 109.47214 * 290.00080 * 17 15 14 45 45 H 1.08998 * 109.46650 * 50.00774 * 17 15 14 46 46 H 0.96999 * 120.00801 * 180.02562 * 21 20 18 47 47 H 1.07997 * 119.99977 * 180.25079 * 26 8 7 48 48 H 1.08999 * 109.47401 * 89.99948 * 28 27 26 49 49 H 1.08996 * 109.47238 * 209.99780 * 28 27 26 50 50 H 1.09006 * 109.47575 * 330.00053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5772 -1.1703 0.1202 6 6 4.2230 -0.1067 0.7367 7 6 5.5978 -0.1124 0.8613 8 6 6.3361 -1.1761 0.3586 9 7 7.7299 -1.1790 0.4787 10 6 8.4113 -0.0572 1.1295 11 6 9.9206 -0.3081 1.1297 12 1 10.1287 -1.2718 1.5945 13 8 10.4026 -0.3142 -0.2156 14 6 10.6217 0.8003 1.9176 15 7 12.0561 0.4988 2.0161 16 6 12.7841 1.6051 2.6518 17 6 12.2808 -0.7618 2.7361 18 6 13.7276 -1.1633 2.6064 19 1 14.4117 -0.5438 2.0457 20 6 14.1778 -2.3215 3.2037 21 7 15.4402 -2.6722 3.0902 22 14 12.9943 -3.3935 4.1731 23 1 12.3778 -4.3953 3.2665 24 1 13.7327 -4.0932 5.2549 25 1 11.9314 -2.5444 4.7683 26 6 5.6901 -2.2395 -0.2583 27 6 4.3144 -2.2364 -0.3768 28 6 3.6134 -3.3900 -1.0467 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0278 0.0005 31 1 -0.3634 -0.5137 -0.8900 32 1 1.6994 -2.0051 -0.0846 33 1 3.6492 0.7226 1.1234 34 1 6.0996 0.7123 1.3454 35 1 8.2451 -1.9237 0.1312 36 1 8.0587 0.0356 2.1567 37 1 8.1957 0.8631 0.5867 38 1 10.2510 0.5139 -0.6914 39 1 10.4850 1.7526 1.4052 40 1 10.1937 0.8613 2.9182 41 1 12.4537 1.7111 3.6852 42 1 13.8535 1.3952 2.6321 43 1 12.5852 2.5298 2.1101 44 1 12.0340 -0.6277 3.7892 45 1 11.6481 -1.5408 2.3108 46 1 15.7570 -3.4873 3.5100 47 1 6.2637 -3.0685 -0.6456 48 1 3.3652 -4.1463 -0.3021 49 1 2.6991 -3.0336 -1.5211 50 1 4.2687 -3.8247 -1.8015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819401876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = -76.289693 kcal Electronic energy + Delta-G solvation = -28383.139976 eV Core-core repulsion = 24409.211167 eV Total energy + Delta-G solvation = -3973.928809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.56199 -40.10760 -39.38708 -37.51468 -36.54916 -34.78740 -34.61058 -33.29451 -31.91961 -30.83403 -30.04077 -29.04478 -27.48534 -26.78710 -25.08487 -24.02686 -23.26765 -21.68761 -21.51969 -21.30516 -19.10791 -18.73895 -18.17848 -17.63997 -17.48704 -17.12679 -16.50784 -16.35133 -16.32142 -15.94832 -15.52120 -15.37089 -15.09226 -14.76124 -14.68755 -14.58816 -14.45186 -14.30211 -14.05816 -13.90831 -13.63689 -13.30498 -13.24673 -13.11941 -13.01419 -12.82981 -12.74818 -12.64687 -12.41559 -12.39357 -12.15193 -11.88851 -11.70355 -11.65424 -11.41073 -10.90676 -10.81165 -10.77798 -10.13248 -9.63883 -8.99625 -8.29429 -8.01930 -6.32056 0.45459 0.54121 1.31433 1.32776 1.42811 1.68131 2.22449 2.31866 2.41952 2.94063 3.03071 3.18110 3.59044 3.78709 3.81790 3.95728 3.98823 4.03193 4.19208 4.34599 4.39966 4.44817 4.51085 4.55352 4.56193 4.56641 4.65779 4.67554 4.69384 4.74117 4.84072 4.87288 4.99192 5.00916 5.08942 5.13199 5.13663 5.19081 5.32464 5.35359 5.53979 5.54866 5.60110 5.94990 5.98739 6.33628 6.41978 6.55365 6.63616 6.73991 6.79667 6.95720 7.22145 7.30739 8.87423 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.002108 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.284521 B =13280.121526 C =14055.447468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.497 3.503 3 O -0.581 6.581 4 N -0.654 5.654 5 C 0.068 3.932 6 C -0.094 4.094 7 C -0.199 4.199 8 C 0.200 3.800 9 N -0.741 5.741 10 C 0.106 3.894 11 C 0.107 3.893 12 H 0.082 0.918 13 O -0.559 6.559 14 C 0.026 3.974 15 N -0.541 5.541 16 C 0.041 3.959 17 C 0.171 3.829 18 C -0.514 4.514 19 H 0.036 0.964 20 C 0.006 3.994 21 N -0.948 5.948 22 Si 0.945 3.055 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.251 1.251 26 C -0.189 4.189 27 C -0.065 4.065 28 C -0.113 4.113 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.425 0.575 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.383 0.617 39 H 0.100 0.900 40 H 0.042 0.958 41 H 0.019 0.981 42 H 0.045 0.955 43 H 0.082 0.918 44 H -0.015 1.015 45 H 0.030 0.970 46 H 0.266 0.734 47 H 0.134 0.866 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.732 1.611 -6.507 35.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.461 6.461 4 N -0.300 5.300 5 C -0.027 4.027 6 C -0.114 4.114 7 C -0.222 4.222 8 C 0.096 3.904 9 N -0.371 5.371 10 C -0.019 4.019 11 C 0.047 3.953 12 H 0.100 0.900 13 O -0.365 6.365 14 C -0.103 4.103 15 N -0.265 5.265 16 C -0.107 4.107 17 C 0.044 3.956 18 C -0.553 4.553 19 H 0.054 0.946 20 C -0.191 4.191 21 N -0.589 5.589 22 Si 0.768 3.232 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.175 1.175 26 C -0.212 4.212 27 C -0.068 4.068 28 C -0.170 4.170 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.264 0.736 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.118 0.882 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.002 0.998 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.152 0.848 48 H 0.106 0.894 49 H 0.097 0.903 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -33.820 1.750 -6.663 34.515 hybrid contribution 0.167 -0.385 1.103 1.181 sum -33.653 1.365 -5.559 34.136 Atomic orbital electron populations 1.21948 0.87053 1.06413 1.06799 1.21878 0.92639 0.82532 0.74195 1.90689 1.71748 1.33276 1.50431 1.43479 1.04541 1.10379 1.71628 1.17481 0.83729 0.97382 1.04157 1.21094 0.94139 0.98494 0.97716 1.20619 0.93724 0.99872 1.07978 1.17973 0.83756 0.94135 0.94509 1.44607 1.02740 1.24240 1.65553 1.21921 0.91390 0.90345 0.98249 1.22028 0.90380 0.99325 0.83601 0.90029 1.86645 1.83818 1.41664 1.24351 1.22797 0.88342 0.99503 0.99649 1.61768 1.08513 1.03120 1.53117 1.22191 0.98812 0.93471 0.96217 1.19988 0.95436 0.89338 0.90885 1.21275 0.94562 1.07581 1.31856 0.94582 1.25858 0.96843 0.99011 0.97419 1.70050 1.16686 1.25604 1.46564 0.85754 0.79408 0.79214 0.78826 1.19024 1.20597 1.17470 1.20517 0.94019 0.99561 1.07099 1.19631 0.92744 0.96497 0.97964 1.20814 1.00633 0.94924 1.00579 0.86748 0.89159 0.86557 0.73589 0.85487 0.85791 0.76161 0.91172 0.90557 0.76804 0.88159 0.93953 0.96285 0.93614 0.89894 0.99788 0.95182 0.92463 0.84782 0.89382 0.90346 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.32 71.23 0.74 -0.07 16 2 C 0.50 7.88 7.74 87.66 0.68 8.56 16 3 O -0.58 -15.36 14.26 -3.08 -0.04 -15.41 16 4 N -0.65 -8.80 4.98 -303.36 -1.51 -10.31 16 5 C 0.07 1.39 6.41 38.10 0.24 1.63 16 6 C -0.09 -2.34 8.71 22.38 0.19 -2.15 16 7 C -0.20 -4.87 9.31 22.38 0.21 -4.66 16 8 C 0.20 4.74 6.66 38.17 0.25 4.99 16 9 N -0.74 -17.21 5.69 -339.26 -1.93 -19.14 16 10 C 0.11 2.35 4.55 86.38 0.39 2.74 16 11 C 0.11 2.99 2.88 30.59 0.09 3.08 16 12 H 0.08 2.76 6.01 -2.39 -0.01 2.74 16 13 O -0.56 -16.76 13.23 -148.98 -1.97 -18.73 16 14 C 0.03 0.75 4.62 86.30 0.40 1.15 16 15 N -0.54 -21.84 4.73 -927.02 -4.39 -26.23 16 16 C 0.04 1.53 9.35 127.69 1.19 2.73 16 17 C 0.17 8.21 3.63 85.56 0.31 8.52 16 18 C -0.51 -30.38 9.08 25.60 0.23 -30.15 16 19 H 0.04 2.38 7.34 -2.91 -0.02 2.36 16 20 C 0.01 0.34 5.47 84.65 0.46 0.80 16 21 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 22 Si 0.94 44.65 27.47 68.60 1.88 46.54 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 26 C -0.19 -3.95 9.54 22.39 0.21 -3.73 16 27 C -0.07 -1.18 5.89 -19.76 -0.12 -1.30 16 28 C -0.11 -1.12 9.44 71.23 0.67 -0.45 16 29 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.09 0.59 8.12 -2.38 -0.02 0.57 16 31 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.42 2.33 7.40 -92.71 -0.69 1.64 16 33 H 0.13 3.50 5.79 -2.91 -0.02 3.48 16 34 H 0.12 2.83 6.73 -2.91 -0.02 2.81 16 35 H 0.40 9.54 8.49 -92.71 -0.79 8.75 16 36 H 0.07 1.50 7.94 -2.38 -0.02 1.48 16 37 H 0.08 1.48 7.96 -2.39 -0.02 1.46 16 38 H 0.38 8.46 9.05 -74.06 -0.67 7.79 16 39 H 0.10 2.34 8.08 -2.39 -0.02 2.32 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.04 1.99 6.89 -2.39 -0.02 1.97 16 43 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 44 H -0.02 -0.74 7.18 -2.39 -0.02 -0.76 16 45 H 0.03 1.44 5.23 -2.39 -0.01 1.43 16 46 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 47 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 48 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.08 0.52 6.97 -2.39 -0.02 0.50 16 50 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 Total: -1.00 -81.32 401.09 -2.71 -84.03 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -1.22 Total: 27.54 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 6.17 Total: -8.30 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -7.53 Total: -115.68 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -2.01 Total: -34.14 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -81.32 -2.71 -84.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819401876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.740 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds