Wall clock time and date at job start Tue Mar 31 2020 18:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36770 * 125.80088 * 2 1 4 4 C 1.47259 * 126.94158 * 359.97438 * 3 2 1 5 5 O 1.21623 * 120.00366 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99927 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00047 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47120 * 180.02562 * 7 6 4 9 9 H 1.08993 * 110.78356 * 56.78419 * 8 7 6 10 10 C 1.54327 * 110.72042 * 293.54191 * 8 7 6 11 11 N 1.47022 * 107.27336 * 219.44597 * 10 8 7 12 12 C 1.36938 * 125.64666 * 178.90556 * 11 10 8 13 13 H 1.07995 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.38807 * 119.99658 * 180.02562 * 12 11 10 15 15 N 1.31617 * 120.00580 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99640 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47389 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46786 * 120.00151 * 16 14 12 19 19 H 1.48501 * 109.47113 * 239.99977 * 16 14 12 20 20 C 1.47425 * 108.70334 * 358.94217 * 11 10 8 21 21 C 1.54915 * 104.83334 * 24.12789 * 20 11 10 22 22 H 1.08995 * 111.00392 * 204.91661 * 21 20 11 23 23 O 1.42901 * 111.00253 * 81.06291 * 21 20 11 24 24 C 1.46693 * 106.11930 * 180.24306 * 3 2 1 25 25 C 1.34494 * 106.32635 * 359.62269 * 24 3 2 26 26 N 1.34661 * 125.80629 * 180.02562 * 2 1 3 27 27 C 1.46503 * 124.84720 * 359.96750 * 26 2 1 28 28 C 1.52994 * 109.47441 * 119.99864 * 27 26 2 29 29 C 1.53008 * 109.46818 * 239.99705 * 27 26 2 30 30 H 1.09001 * 109.46587 * 89.98163 * 1 2 3 31 31 H 1.08993 * 109.47329 * 209.97487 * 1 2 3 32 32 H 1.08997 * 109.47330 * 329.98140 * 1 2 3 33 33 H 0.97001 * 120.00314 * 0.02562 * 6 4 3 34 34 H 1.08993 * 109.47071 * 59.99896 * 7 6 4 35 35 H 1.09004 * 109.47161 * 300.00147 * 7 6 4 36 36 H 1.08997 * 109.87800 * 338.86780 * 10 8 7 37 37 H 1.08998 * 109.87662 * 100.02567 * 10 8 7 38 38 H 0.96996 * 120.00418 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36855 * 142.96531 * 20 11 10 40 40 H 1.08999 * 110.36490 * 265.17846 * 20 11 10 41 41 H 0.96700 * 113.99672 * 67.80895 * 23 21 20 42 42 H 1.07993 * 126.83836 * 179.74942 * 24 3 2 43 43 H 1.08002 * 125.57038 * 180.08766 * 25 24 3 44 44 H 1.09001 * 109.46730 * 359.97438 * 27 26 2 45 45 H 1.08999 * 109.47210 * 59.99611 * 28 27 26 46 46 H 1.08995 * 109.47131 * 180.02562 * 28 27 26 47 47 H 1.08999 * 109.46824 * 299.99502 * 28 27 26 48 48 H 1.09002 * 109.46803 * 60.00186 * 29 27 26 49 49 H 1.08995 * 109.46964 * 179.97438 * 29 27 26 50 50 H 1.08999 * 109.47042 * 299.99905 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0015 6 7 2.7849 3.5054 -0.0010 7 6 2.3503 4.9045 -0.0009 8 6 3.5766 5.8194 -0.0021 9 1 4.2197 5.6031 -0.8551 10 6 4.3601 5.6842 1.3206 11 7 4.8138 7.0305 1.6988 12 6 5.5268 7.3453 2.8247 13 1 5.8025 6.5697 3.5238 14 6 5.8954 8.6614 3.0673 15 7 5.5599 9.6067 2.2151 16 14 6.8675 9.0910 4.6036 17 1 7.1170 7.8579 5.3924 18 1 8.1647 9.7000 4.2142 19 1 6.0940 10.0566 5.4249 20 6 4.3732 7.9855 0.6658 21 6 3.1486 7.3109 -0.0016 22 1 3.0068 7.6771 -1.0183 23 8 1.9680 7.5047 0.7799 24 6 3.6883 0.6152 -0.0060 25 6 3.6096 -0.7274 -0.0005 26 7 2.2948 -1.0921 -0.0005 27 6 1.8095 -2.4744 -0.0004 28 6 2.3204 -3.1944 -1.2499 29 6 2.3217 -3.1947 1.2485 30 1 -0.3632 0.0003 -1.0277 31 1 -0.3633 -0.8901 0.5134 32 1 -0.3634 0.8898 0.5141 33 1 3.7310 3.2915 -0.0013 34 1 1.7522 5.0991 0.8892 35 1 1.7514 5.0990 -0.8907 36 1 3.7101 5.2802 2.0967 37 1 5.2199 5.0299 1.1767 38 1 5.8171 10.5264 2.3849 39 1 4.0828 8.9315 1.1227 40 1 5.1655 8.1456 -0.0655 41 1 1.6624 8.4216 0.8099 42 1 4.5890 1.2110 -0.0114 43 1 4.4498 -1.4060 -0.0014 44 1 0.7195 -2.4767 0.0005 45 1 3.4104 -3.1920 -1.2505 46 1 1.9589 -4.2227 -1.2501 47 1 1.9554 -2.6813 -2.1396 48 1 1.9577 -2.6817 2.1387 49 1 1.9603 -4.2229 1.2488 50 1 3.4117 -3.1923 1.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958346082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:10 Heat of formation + Delta-G solvation = -17.248546 kcal Electronic energy + Delta-G solvation = -29166.649216 eV Core-core repulsion = 25195.280623 eV Total energy + Delta-G solvation = -3971.368593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.61751 -39.13112 -38.01434 -35.56783 -34.71982 -34.38161 -32.13616 -31.68429 -30.33763 -29.29728 -27.84167 -27.66392 -26.49091 -25.33901 -23.74271 -22.62695 -22.02006 -20.41567 -19.68827 -19.30903 -18.71203 -17.44582 -17.22249 -16.52759 -15.93911 -15.52816 -15.41209 -14.86318 -14.80037 -14.69241 -14.07125 -13.84851 -13.77297 -13.65577 -13.45813 -13.10529 -12.98142 -12.92629 -12.75876 -12.57877 -12.50613 -12.44080 -12.20220 -11.83521 -11.71999 -11.59472 -11.52998 -11.26405 -11.19125 -10.77624 -10.55873 -10.28426 -10.08228 -9.92602 -9.78449 -9.49082 -9.02571 -8.80130 -8.64213 -8.58114 -8.17497 -6.78610 -5.64449 -3.03972 1.78739 2.36661 2.55524 3.41482 3.47118 3.49557 3.67544 3.78433 4.08776 4.39456 4.46138 4.50952 4.58903 4.78769 4.83627 4.96767 5.06183 5.09813 5.15958 5.17228 5.25771 5.34876 5.41758 5.45982 5.49267 5.52251 5.58077 5.58786 5.60134 5.71334 5.84820 5.91814 6.01425 6.11583 6.19979 6.25067 6.48455 6.54278 6.68449 6.71165 6.85866 6.96562 7.00191 7.13937 7.34535 7.63285 7.80554 7.92590 8.29944 8.43885 8.64222 9.23636 9.85108 10.49614 11.40571 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.002330 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.794047 B =12013.443351 C =13001.815131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.102 3.898 3 C -0.233 4.233 4 C 0.589 3.411 5 O -0.557 6.557 6 N -0.723 5.723 7 C 0.143 3.857 8 C -0.106 4.106 9 H 0.084 0.916 10 C 0.145 3.855 11 N -0.598 5.598 12 C -0.215 4.215 13 H 0.078 0.922 14 C -0.014 4.014 15 N -0.926 5.926 16 Si 0.915 3.085 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.126 3.874 21 C 0.082 3.918 22 H 0.054 0.946 23 O -0.557 6.557 24 C -0.166 4.166 25 C -0.016 4.016 26 N -0.437 5.437 27 C 0.120 3.880 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.019 0.981 38 H 0.251 0.749 39 H 0.111 0.889 40 H 0.019 0.981 41 H 0.374 0.626 42 H 0.145 0.855 43 H 0.162 0.838 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 -24.364 -8.485 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.014 4.014 3 C -0.242 4.242 4 C 0.377 3.623 5 O -0.437 6.437 6 N -0.373 5.373 7 C 0.020 3.980 8 C -0.125 4.125 9 H 0.103 0.897 10 C 0.019 3.981 11 N -0.324 5.324 12 C -0.343 4.343 13 H 0.096 0.904 14 C -0.209 4.209 15 N -0.576 5.576 16 Si 0.746 3.254 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.001 3.999 21 C 0.021 3.979 22 H 0.071 0.929 23 O -0.362 6.362 24 C -0.190 4.190 25 C -0.142 4.142 26 N -0.115 5.115 27 C 0.018 3.982 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.232 0.768 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.061 0.939 39 H 0.129 0.871 40 H 0.036 0.964 41 H 0.221 0.779 42 H 0.163 0.837 43 H 0.180 0.820 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.909 -24.978 -8.280 27.477 hybrid contribution 1.306 0.719 0.635 1.621 sum -6.603 -24.258 -7.645 26.278 Atomic orbital electron populations 1.20557 0.87358 1.03951 1.03184 1.20279 0.93641 0.85175 1.02305 1.20174 0.93178 0.92060 1.18825 1.17322 0.85324 0.84007 0.75609 1.90710 1.16724 1.84529 1.51782 1.45872 1.09700 1.06409 1.75305 1.21167 0.96133 0.78103 1.02616 1.22496 0.96105 0.94331 0.99572 0.89749 1.21306 0.94788 0.89196 0.92811 1.44363 1.63682 1.01128 1.23212 1.19143 1.25185 0.92877 0.97126 0.90443 1.24759 1.01545 0.95697 0.98909 1.69759 1.51423 1.00206 1.36177 0.85982 0.79200 0.78015 0.82233 1.20553 1.21845 1.21773 1.22581 0.90936 0.96121 0.90283 1.23197 0.87366 0.94440 0.92874 0.92851 1.86406 1.43497 1.32084 1.74186 1.22035 0.95864 0.93524 1.07564 1.21505 0.85604 0.95958 1.11150 1.43814 1.05864 1.05397 1.56412 1.21502 1.00444 0.79345 0.96915 1.22161 1.02374 1.00676 0.96753 1.22177 1.02414 1.00687 0.96816 0.90706 0.92248 0.87925 0.76751 0.90304 0.92070 0.95306 0.96341 0.93858 0.87121 0.96355 0.77943 0.83731 0.82050 0.88171 0.91586 0.90653 0.91684 0.91611 0.90653 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.34 36.00 0.34 -0.64 16 2 C 0.10 1.23 6.89 -81.88 -0.56 0.66 16 3 C -0.23 -3.24 6.29 -103.35 -0.65 -3.89 16 4 C 0.59 9.70 7.81 -12.59 -0.10 9.60 16 5 O -0.56 -10.68 14.81 5.26 0.08 -10.60 16 6 N -0.72 -11.18 5.40 -61.44 -0.33 -11.51 16 7 C 0.14 2.46 4.59 -4.04 -0.02 2.44 16 8 C -0.11 -1.90 2.95 -88.78 -0.26 -2.16 16 9 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 10 C 0.14 3.11 6.52 -3.06 -0.02 3.09 16 11 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 12 C -0.21 -6.09 10.27 -15.06 -0.15 -6.25 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 15 N -0.93 -26.97 10.09 55.49 0.56 -26.41 16 16 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C 0.13 3.03 5.62 -2.53 -0.01 3.01 16 21 C 0.08 1.57 4.17 -24.57 -0.10 1.47 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 O -0.56 -10.73 12.22 -35.23 -0.43 -11.16 16 24 C -0.17 -1.90 10.56 -37.49 -0.40 -2.30 16 25 C -0.02 -0.16 10.17 -16.82 -0.17 -0.33 16 26 N -0.44 -4.09 2.57 -105.46 -0.27 -4.36 16 27 C 0.12 0.73 3.45 -67.93 -0.23 0.49 16 28 C -0.16 -0.76 9.23 37.15 0.34 -0.42 16 29 C -0.16 -0.82 9.23 37.16 0.34 -0.48 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.46 6.96 -51.93 -0.36 0.10 16 32 H 0.10 1.32 6.47 -51.93 -0.34 0.98 16 33 H 0.40 5.41 7.45 -40.82 -0.30 5.10 16 34 H 0.08 1.57 7.44 -51.93 -0.39 1.19 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.66 7.77 -51.93 -0.40 0.26 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.37 5.89 9.12 45.56 0.42 6.31 16 42 H 0.14 1.44 7.69 -52.49 -0.40 1.03 16 43 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.10 0.53 6.47 -51.93 -0.34 0.20 16 45 H 0.07 0.31 7.88 -51.93 -0.41 -0.10 16 46 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.07 0.33 7.88 -51.93 -0.41 -0.08 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -34.90 398.52 -9.18 -44.09 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.44 Total: 8.91 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.76 Total: 3.82 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.62 Total: -58.40 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.35 Total: -21.76 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.90 -9.18 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958346082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.838 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds