Wall clock time and date at job start Tue Mar 31 2020 18:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36770 * 125.80088 * 2 1 4 4 C 1.47259 * 126.94158 * 359.97438 * 3 2 1 5 5 O 1.21623 * 120.00366 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99927 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00047 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47120 * 180.02562 * 7 6 4 9 9 H 1.08993 * 110.78356 * 56.78419 * 8 7 6 10 10 C 1.54327 * 110.72042 * 293.54191 * 8 7 6 11 11 N 1.47022 * 107.27336 * 219.44597 * 10 8 7 12 12 C 1.36938 * 125.64666 * 178.90556 * 11 10 8 13 13 H 1.07995 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.38807 * 119.99658 * 180.02562 * 12 11 10 15 15 N 1.31617 * 120.00580 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99640 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47389 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46786 * 120.00151 * 16 14 12 19 19 H 1.48501 * 109.47113 * 239.99977 * 16 14 12 20 20 C 1.47425 * 108.70334 * 358.94217 * 11 10 8 21 21 C 1.54915 * 104.83334 * 24.12789 * 20 11 10 22 22 H 1.08995 * 111.00392 * 204.91661 * 21 20 11 23 23 O 1.42901 * 111.00253 * 81.06291 * 21 20 11 24 24 C 1.46693 * 106.11930 * 180.24306 * 3 2 1 25 25 C 1.34494 * 106.32635 * 359.62269 * 24 3 2 26 26 N 1.34661 * 125.80629 * 180.02562 * 2 1 3 27 27 C 1.46503 * 124.84720 * 359.96750 * 26 2 1 28 28 C 1.52994 * 109.47441 * 119.99864 * 27 26 2 29 29 C 1.53008 * 109.46818 * 239.99705 * 27 26 2 30 30 H 1.09001 * 109.46587 * 89.98163 * 1 2 3 31 31 H 1.08993 * 109.47329 * 209.97487 * 1 2 3 32 32 H 1.08997 * 109.47330 * 329.98140 * 1 2 3 33 33 H 0.97001 * 120.00314 * 0.02562 * 6 4 3 34 34 H 1.08993 * 109.47071 * 59.99896 * 7 6 4 35 35 H 1.09004 * 109.47161 * 300.00147 * 7 6 4 36 36 H 1.08997 * 109.87800 * 338.86780 * 10 8 7 37 37 H 1.08998 * 109.87662 * 100.02567 * 10 8 7 38 38 H 0.96996 * 120.00418 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36855 * 142.96531 * 20 11 10 40 40 H 1.08999 * 110.36490 * 265.17846 * 20 11 10 41 41 H 0.96700 * 113.99672 * 67.80895 * 23 21 20 42 42 H 1.07993 * 126.83836 * 179.74942 * 24 3 2 43 43 H 1.08002 * 125.57038 * 180.08766 * 25 24 3 44 44 H 1.09001 * 109.46730 * 359.97438 * 27 26 2 45 45 H 1.08999 * 109.47210 * 59.99611 * 28 27 26 46 46 H 1.08995 * 109.47131 * 180.02562 * 28 27 26 47 47 H 1.08999 * 109.46824 * 299.99502 * 28 27 26 48 48 H 1.09002 * 109.46803 * 60.00186 * 29 27 26 49 49 H 1.08995 * 109.46964 * 179.97438 * 29 27 26 50 50 H 1.08999 * 109.47042 * 299.99905 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0015 6 7 2.7849 3.5054 -0.0010 7 6 2.3503 4.9045 -0.0009 8 6 3.5766 5.8194 -0.0021 9 1 4.2197 5.6031 -0.8551 10 6 4.3601 5.6842 1.3206 11 7 4.8138 7.0305 1.6988 12 6 5.5268 7.3453 2.8247 13 1 5.8025 6.5697 3.5238 14 6 5.8954 8.6614 3.0673 15 7 5.5599 9.6067 2.2151 16 14 6.8675 9.0910 4.6036 17 1 7.1170 7.8579 5.3924 18 1 8.1647 9.7000 4.2142 19 1 6.0940 10.0566 5.4249 20 6 4.3732 7.9855 0.6658 21 6 3.1486 7.3109 -0.0016 22 1 3.0068 7.6771 -1.0183 23 8 1.9680 7.5047 0.7799 24 6 3.6883 0.6152 -0.0060 25 6 3.6096 -0.7274 -0.0005 26 7 2.2948 -1.0921 -0.0005 27 6 1.8095 -2.4744 -0.0004 28 6 2.3204 -3.1944 -1.2499 29 6 2.3217 -3.1947 1.2485 30 1 -0.3632 0.0003 -1.0277 31 1 -0.3633 -0.8901 0.5134 32 1 -0.3634 0.8898 0.5141 33 1 3.7310 3.2915 -0.0013 34 1 1.7522 5.0991 0.8892 35 1 1.7514 5.0990 -0.8907 36 1 3.7101 5.2802 2.0967 37 1 5.2199 5.0299 1.1767 38 1 5.8171 10.5264 2.3849 39 1 4.0828 8.9315 1.1227 40 1 5.1655 8.1456 -0.0655 41 1 1.6624 8.4216 0.8099 42 1 4.5890 1.2110 -0.0114 43 1 4.4498 -1.4060 -0.0014 44 1 0.7195 -2.4767 0.0005 45 1 3.4104 -3.1920 -1.2505 46 1 1.9589 -4.2227 -1.2501 47 1 1.9554 -2.6813 -2.1396 48 1 1.9577 -2.6817 2.1387 49 1 1.9603 -4.2229 1.2488 50 1 3.4117 -3.1923 1.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958346082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:09 Heat of formation + Delta-G solvation = -41.680280 kcal Electronic energy + Delta-G solvation = -29167.708655 eV Core-core repulsion = 25195.280623 eV Total energy + Delta-G solvation = -3972.428032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.41948 -40.50396 -39.55008 -36.32001 -36.14144 -35.98190 -33.93832 -32.55715 -31.66630 -30.56777 -29.35552 -28.19013 -27.59863 -26.96626 -25.28977 -23.40728 -23.07670 -22.14336 -21.20041 -20.50230 -19.51941 -19.11045 -18.34942 -17.97101 -17.05066 -16.80276 -16.68764 -16.44955 -16.01539 -15.65396 -15.52378 -15.43993 -14.88256 -14.49354 -14.42618 -14.39866 -14.05349 -13.98120 -13.85758 -13.66902 -13.52585 -13.37773 -13.17313 -13.04523 -13.00628 -12.93724 -12.64931 -12.42573 -12.28474 -12.19776 -12.01000 -11.95843 -11.85836 -11.79809 -11.59642 -10.83387 -10.77864 -10.64782 -10.04984 -9.48768 -9.06108 -8.85044 -7.78207 -5.20507 0.78688 1.46108 1.47212 1.54905 1.57380 1.83571 2.46647 2.50114 2.63255 3.29483 3.37971 3.62807 3.64516 3.80135 3.91786 3.98095 3.98417 4.00825 4.04226 4.09640 4.22486 4.37386 4.46708 4.55948 4.62476 4.66884 4.67649 4.69521 4.82137 4.82851 4.85062 4.87254 4.94763 5.00410 5.03476 5.07384 5.24419 5.24757 5.29707 5.36298 5.40710 5.49928 5.56681 5.78425 5.83846 6.16345 6.29588 6.41280 6.72912 6.98441 7.11957 7.40608 7.78371 8.41688 9.24260 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.002330 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.794047 B =12013.443351 C =13001.815131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.097 3.903 3 C -0.270 4.270 4 C 0.583 3.417 5 O -0.593 6.593 6 N -0.717 5.717 7 C 0.159 3.841 8 C -0.090 4.090 9 H 0.112 0.888 10 C 0.144 3.856 11 N -0.621 5.621 12 C -0.235 4.235 13 H 0.076 0.924 14 C -0.067 4.067 15 N -0.948 5.948 16 Si 0.979 3.021 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.292 1.292 20 C 0.127 3.873 21 C 0.093 3.907 22 H 0.090 0.910 23 O -0.569 6.569 24 C -0.184 4.184 25 C -0.005 4.005 26 N -0.430 5.430 27 C 0.112 3.888 28 C -0.157 4.157 29 C -0.159 4.159 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.408 0.592 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.011 0.989 37 H 0.031 0.969 38 H 0.247 0.753 39 H 0.080 0.920 40 H 0.003 0.997 41 H 0.388 0.612 42 H 0.154 0.846 43 H 0.194 0.806 44 H 0.108 0.892 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 -27.180 -9.112 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.022 4.022 3 C -0.280 4.280 4 C 0.374 3.626 5 O -0.476 6.476 6 N -0.367 5.367 7 C 0.035 3.965 8 C -0.109 4.109 9 H 0.130 0.870 10 C 0.019 3.981 11 N -0.346 5.346 12 C -0.364 4.364 13 H 0.094 0.906 14 C -0.259 4.259 15 N -0.598 5.598 16 Si 0.808 3.192 17 H -0.194 1.194 18 H -0.216 1.216 19 H -0.219 1.219 20 C 0.002 3.998 21 C 0.032 3.968 22 H 0.108 0.892 23 O -0.377 6.377 24 C -0.207 4.207 25 C -0.131 4.131 26 N -0.106 5.106 27 C 0.012 3.988 28 C -0.215 4.215 29 C -0.217 4.217 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.244 0.756 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.029 0.971 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.021 0.979 41 H 0.237 0.763 42 H 0.172 0.828 43 H 0.211 0.789 44 H 0.126 0.874 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.116 0.884 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.362 -27.833 -8.917 30.139 hybrid contribution 1.119 1.505 0.847 2.057 sum -6.243 -26.328 -8.070 28.236 Atomic orbital electron populations 1.20507 0.86744 1.03893 1.03542 1.20471 0.94327 0.85699 1.01700 1.20169 0.95046 0.91048 1.21717 1.17788 0.84868 0.85214 0.74749 1.90680 1.18146 1.85231 1.53589 1.45760 1.10227 1.05606 1.75142 1.20837 0.95316 0.78983 1.01339 1.22438 0.96133 0.93815 0.98552 0.86979 1.21398 0.95186 0.87443 0.94077 1.44666 1.63614 1.03246 1.23108 1.19456 1.25630 0.93191 0.98169 0.90628 1.25575 1.02839 0.95649 1.01841 1.69995 1.52147 1.00143 1.37528 0.84991 0.77583 0.77786 0.78855 1.19448 1.21645 1.21891 1.22448 0.92431 0.95289 0.89622 1.23112 0.85254 0.94578 0.93838 0.89248 1.86393 1.43185 1.33541 1.74541 1.22227 0.95151 0.94637 1.08709 1.21988 0.86414 0.95788 1.08894 1.44096 1.05628 1.06158 1.54710 1.21844 1.01134 0.77597 0.98254 1.22144 1.02532 1.01512 0.95289 1.22168 1.02551 1.01575 0.95405 0.90092 0.89452 0.90764 0.75582 0.93440 0.91483 0.97115 0.95061 0.94293 0.90194 0.97943 0.76340 0.82790 0.78872 0.87375 0.91298 0.88459 0.92795 0.93060 0.88404 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.34 71.23 0.67 -1.17 16 2 C 0.10 2.25 6.89 41.78 0.29 2.53 16 3 C -0.27 -7.48 6.29 -19.04 -0.12 -7.60 16 4 C 0.58 19.59 7.81 86.61 0.68 20.27 16 5 O -0.59 -23.56 14.81 -4.10 -0.06 -23.62 16 6 N -0.72 -22.15 5.40 -466.53 -2.52 -24.67 16 7 C 0.16 5.44 4.59 86.38 0.40 5.84 16 8 C -0.09 -3.14 2.95 -9.60 -0.03 -3.17 16 9 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 10 C 0.14 6.19 6.52 86.73 0.57 6.76 16 11 N -0.62 -32.70 3.39 -691.99 -2.35 -35.05 16 12 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 13 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 14 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 15 N -0.95 -56.33 10.09 21.65 0.22 -56.11 16 16 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 20 C 0.13 6.20 5.62 86.86 0.49 6.69 16 21 C 0.09 3.47 4.17 31.99 0.13 3.60 16 22 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 23 O -0.57 -21.86 12.22 -148.98 -1.82 -23.68 16 24 C -0.18 -3.99 10.56 23.62 0.25 -3.74 16 25 C 0.00 -0.08 10.17 83.12 0.85 0.77 16 26 N -0.43 -7.17 2.57 -487.56 -1.25 -8.42 16 27 C 0.11 1.04 3.45 44.99 0.16 1.19 16 28 C -0.16 -0.98 9.23 71.98 0.66 -0.32 16 29 C -0.16 -1.12 9.23 71.98 0.66 -0.45 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.22 6.96 -2.39 -0.02 1.20 16 32 H 0.07 1.99 6.47 -2.39 -0.02 1.97 16 33 H 0.41 10.83 7.45 -92.71 -0.69 10.14 16 34 H 0.05 1.94 7.44 -2.39 -0.02 1.92 16 35 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.01 0.50 7.77 -2.39 -0.02 0.48 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.08 4.40 5.87 -2.39 -0.01 4.39 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.39 12.18 9.12 -74.06 -0.68 11.50 16 42 H 0.15 2.87 7.69 -2.91 -0.02 2.85 16 43 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.11 0.84 6.47 -2.39 -0.02 0.82 16 45 H 0.07 0.41 7.88 -2.39 -0.02 0.39 16 46 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.07 0.46 7.88 -2.39 -0.02 0.45 16 Total: -1.00 -78.00 398.52 0.80 -77.20 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.41 Total: 30.74 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.97 Total: 15.13 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -5.90 Total: -124.25 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -1.88 Total: -47.29 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -78.00 0.80 -77.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958346082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.517 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds