Wall clock time and date at job start Tue Mar 31 2020 18:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36768 * 125.80199 * 2 1 4 4 C 1.47268 * 126.94041 * 359.97438 * 3 2 1 5 5 O 1.21624 * 120.00001 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99657 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99538 * 180.02562 * 6 4 3 8 8 C 1.53007 * 109.47149 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.63975 * 51.85519 * 8 7 6 10 10 C 1.54315 * 110.71722 * 288.52141 * 8 7 6 11 11 N 1.47023 * 107.27241 * 219.44307 * 10 8 7 12 12 C 1.36938 * 125.65186 * 178.96689 * 11 10 8 13 13 H 1.07999 * 119.99952 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00074 * 179.97438 * 12 11 10 15 15 N 1.31616 * 119.99665 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00169 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47215 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47352 * 119.99940 * 16 14 12 19 19 H 1.48501 * 109.47194 * 240.00360 * 16 14 12 20 20 C 1.47426 * 108.69981 * 358.93706 * 11 10 8 21 21 C 1.54907 * 104.82942 * 24.13288 * 20 11 10 22 22 H 1.09005 * 111.04094 * 81.08152 * 21 20 11 23 23 O 1.42903 * 111.00431 * 204.90944 * 21 20 11 24 24 C 1.46687 * 106.11708 * 180.24765 * 3 2 1 25 25 C 1.34483 * 106.33197 * 359.62249 * 24 3 2 26 26 N 1.34661 * 125.80286 * 180.02562 * 2 1 3 27 27 C 1.46499 * 124.85060 * 359.95483 * 26 2 1 28 28 C 1.53003 * 109.47126 * 120.00074 * 27 26 2 29 29 C 1.52996 * 109.47330 * 240.00478 * 27 26 2 30 30 H 1.09006 * 109.47292 * 89.98003 * 1 2 3 31 31 H 1.09005 * 109.47420 * 209.97091 * 1 2 3 32 32 H 1.08993 * 109.47398 * 329.97564 * 1 2 3 33 33 H 0.96993 * 120.00285 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.47659 * 59.99915 * 7 6 4 35 35 H 1.09007 * 109.46961 * 299.99408 * 7 6 4 36 36 H 1.09003 * 109.88697 * 338.85781 * 10 8 7 37 37 H 1.09000 * 109.88663 * 100.02422 * 10 8 7 38 38 H 0.97001 * 120.00180 * 180.02562 * 15 14 12 39 39 H 1.08994 * 110.37345 * 265.29076 * 20 11 10 40 40 H 1.09007 * 110.36591 * 142.96519 * 20 11 10 41 41 H 0.96700 * 114.00311 * 292.19952 * 23 21 20 42 42 H 1.07996 * 126.83254 * 179.75126 * 24 3 2 43 43 H 1.08006 * 125.57512 * 180.16004 * 25 24 3 44 44 H 1.09006 * 109.47249 * 0.02562 * 27 26 2 45 45 H 1.09006 * 109.46572 * 60.00179 * 28 27 26 46 46 H 1.08998 * 109.47293 * 179.97438 * 28 27 26 47 47 H 1.08998 * 109.47522 * 300.00564 * 28 27 26 48 48 H 1.08993 * 109.47392 * 60.00028 * 29 27 26 49 49 H 1.08998 * 109.47415 * 180.02562 * 29 27 26 50 50 H 1.08996 * 109.46772 * 299.99803 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8701 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0015 6 7 2.7849 3.5054 -0.0010 7 6 2.3503 4.9044 -0.0009 8 6 3.5766 5.8195 -0.0009 9 1 4.2613 5.5444 -0.8030 10 6 4.2882 5.7784 1.3678 11 7 4.7237 7.1488 1.6747 12 6 5.3774 7.5428 2.8116 13 1 5.6143 6.8184 3.5768 14 6 5.7357 8.8732 2.9805 15 7 5.4475 9.7558 2.0476 16 14 6.6269 9.4108 4.5316 17 1 6.8308 8.2365 5.4176 18 1 7.9441 9.9928 4.1693 19 1 5.8135 10.4304 5.2416 20 6 4.3405 8.0283 0.5553 21 6 3.1520 7.3064 -0.1273 22 1 2.2209 7.4938 0.4076 23 8 3.0380 7.6917 -1.4987 24 6 3.6882 0.6151 -0.0061 25 6 3.6096 -0.7274 -0.0007 26 7 2.2947 -1.0921 -0.0005 27 6 1.8094 -2.4744 -0.0002 28 6 2.3202 -3.1946 -1.2497 29 6 2.3216 -3.1945 1.2488 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3634 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 3.7310 3.2914 -0.0006 34 1 1.7521 5.0991 0.8892 35 1 1.7515 5.0989 -0.8908 36 1 3.5971 5.4286 2.1347 37 1 5.1534 5.1174 1.3161 38 1 5.6982 10.6854 2.1654 39 1 5.1701 8.1369 -0.1432 40 1 4.0279 9.0035 0.9289 41 1 2.7747 8.6132 -1.6278 42 1 4.5889 1.2109 -0.0115 43 1 4.4498 -1.4060 -0.0006 44 1 0.7194 -2.4768 0.0001 45 1 3.4103 -3.1922 -1.2503 46 1 1.9595 -4.2232 -1.2493 47 1 1.9553 -2.6816 -2.1395 48 1 1.9577 -2.6815 2.1389 49 1 1.9609 -4.2231 1.2488 50 1 3.4116 -3.1922 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958346083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:14 Heat of formation + Delta-G solvation = -19.987291 kcal Electronic energy + Delta-G solvation = -28989.847821 eV Core-core repulsion = 25018.360467 eV Total energy + Delta-G solvation = -3971.487353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.64076 -39.16466 -38.00458 -35.58888 -35.06258 -34.48793 -32.23170 -31.71457 -30.37582 -29.32702 -27.85351 -27.52848 -26.51865 -25.38624 -23.73116 -22.63880 -22.03469 -20.48216 -19.88019 -19.34851 -18.76216 -17.47534 -16.95606 -16.78359 -16.10573 -15.57745 -15.48206 -15.10420 -14.83619 -14.72590 -14.04127 -13.84858 -13.81151 -13.56408 -13.41514 -13.10005 -12.95624 -12.94245 -12.80676 -12.63971 -12.51899 -12.46089 -12.31110 -11.87261 -11.74049 -11.62440 -11.54607 -11.46435 -11.20447 -10.89916 -10.77546 -10.55198 -10.00174 -9.91245 -9.71819 -9.53210 -9.09146 -8.84930 -8.68260 -8.63063 -8.20341 -6.87133 -5.68539 -3.10667 1.75733 2.34435 2.53384 3.38868 3.44358 3.46935 3.61141 3.73784 4.07232 4.38131 4.44366 4.44856 4.57088 4.76234 4.78660 4.95552 5.03946 5.06964 5.10678 5.14871 5.20008 5.31987 5.34508 5.44365 5.47568 5.48702 5.56302 5.58822 5.60916 5.74333 5.82209 5.89433 6.03118 6.09255 6.11938 6.21600 6.31836 6.47961 6.61638 6.68726 6.78055 6.90425 6.97566 7.11765 7.40025 7.58378 7.77750 7.87302 8.21038 8.32903 8.58519 9.18072 9.78925 10.42622 11.35600 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.002283 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.881242 B =12263.280157 C =13269.623475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.103 3.897 3 C -0.233 4.233 4 C 0.589 3.411 5 O -0.558 6.558 6 N -0.720 5.720 7 C 0.136 3.864 8 C -0.104 4.104 9 H 0.085 0.915 10 C 0.142 3.858 11 N -0.602 5.602 12 C -0.221 4.221 13 H 0.080 0.920 14 C -0.013 4.013 15 N -0.923 5.923 16 Si 0.916 3.084 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.129 3.871 21 C 0.081 3.919 22 H 0.061 0.939 23 O -0.569 6.569 24 C -0.165 4.165 25 C -0.016 4.016 26 N -0.437 5.437 27 C 0.120 3.880 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.025 0.975 38 H 0.252 0.748 39 H 0.022 0.978 40 H 0.109 0.891 41 H 0.376 0.624 42 H 0.145 0.855 43 H 0.162 0.838 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 -25.062 -6.571 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.013 4.013 3 C -0.243 4.243 4 C 0.378 3.622 5 O -0.438 6.438 6 N -0.371 5.371 7 C 0.012 3.988 8 C -0.123 4.123 9 H 0.103 0.897 10 C 0.016 3.984 11 N -0.329 5.329 12 C -0.349 4.349 13 H 0.098 0.902 14 C -0.208 4.208 15 N -0.572 5.572 16 Si 0.747 3.253 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.217 1.217 20 C 0.003 3.997 21 C 0.020 3.980 22 H 0.078 0.922 23 O -0.374 6.374 24 C -0.190 4.190 25 C -0.142 4.142 26 N -0.115 5.115 27 C 0.018 3.982 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.126 0.874 41 H 0.223 0.777 42 H 0.163 0.837 43 H 0.180 0.820 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.040 -25.642 -6.558 27.662 hybrid contribution 1.107 0.722 0.859 1.576 sum -6.934 -24.921 -5.699 26.488 Atomic orbital electron populations 1.20560 0.87349 1.03933 1.03221 1.20278 0.93642 0.85175 1.02230 1.20147 0.93206 0.91986 1.18968 1.17331 0.85284 0.84035 0.75502 1.90708 1.16728 1.84548 1.51853 1.45798 1.09808 1.06111 1.75336 1.21377 0.96345 0.78953 1.02096 1.22392 0.96455 0.94237 0.99224 0.89664 1.21376 0.95726 0.89044 0.92284 1.44342 1.67768 1.01988 1.18801 1.19145 1.28613 0.92964 0.94207 0.90236 1.24806 1.01488 0.95942 0.98553 1.69779 1.52077 1.02167 1.33187 0.85969 0.78943 0.78334 0.82081 1.20482 1.21733 1.21709 1.22533 0.92125 0.96583 0.88444 1.23316 0.99296 0.93738 0.81628 0.92154 1.86374 1.92469 1.32770 1.25752 1.22033 0.95855 0.93536 1.07534 1.21509 0.85606 0.95959 1.11105 1.43820 1.05869 1.05409 1.56371 1.21505 1.00449 0.79325 0.96931 1.22167 1.02389 1.00680 0.96751 1.22173 1.02421 1.00695 0.96795 0.90672 0.92229 0.87952 0.76578 0.91447 0.91375 0.95245 0.95745 0.93723 0.96044 0.87378 0.77723 0.83708 0.82027 0.88164 0.91586 0.90639 0.91662 0.91614 0.90639 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.34 36.00 0.34 -0.61 16 2 C 0.10 1.21 6.89 -81.88 -0.56 0.65 16 3 C -0.23 -3.18 6.29 -103.35 -0.65 -3.83 16 4 C 0.59 9.49 7.81 -12.59 -0.10 9.39 16 5 O -0.56 -10.41 14.81 5.26 0.08 -10.33 16 6 N -0.72 -10.91 5.47 -61.43 -0.34 -11.24 16 7 C 0.14 2.27 5.02 -4.04 -0.02 2.25 16 8 C -0.10 -1.89 2.70 -88.79 -0.24 -2.13 16 9 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 10 C 0.14 2.96 6.75 -3.07 -0.02 2.94 16 11 N -0.60 -15.44 3.39 -170.08 -0.58 -16.02 16 12 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 15 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 16 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 C 0.13 3.12 5.62 -2.53 -0.01 3.11 16 21 C 0.08 1.58 3.88 -24.59 -0.10 1.49 16 22 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 23 O -0.57 -10.16 13.47 -35.23 -0.47 -10.64 16 24 C -0.17 -1.86 10.56 -37.50 -0.40 -2.26 16 25 C -0.02 -0.15 10.17 -16.82 -0.17 -0.32 16 26 N -0.44 -4.01 2.57 -105.46 -0.27 -4.28 16 27 C 0.12 0.71 3.45 -67.93 -0.23 0.47 16 28 C -0.16 -0.75 9.23 37.16 0.34 -0.41 16 29 C -0.16 -0.79 9.23 37.16 0.34 -0.44 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.45 6.96 -51.93 -0.36 0.08 16 32 H 0.10 1.28 6.47 -51.93 -0.34 0.94 16 33 H 0.40 5.34 7.59 -40.82 -0.31 5.03 16 34 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.03 0.62 7.68 -51.93 -0.40 0.22 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.11 2.90 5.88 -51.92 -0.31 2.60 16 41 H 0.38 5.24 9.12 45.56 0.42 5.65 16 42 H 0.15 1.41 7.69 -52.49 -0.40 1.01 16 43 H 0.16 1.06 8.06 -52.48 -0.42 0.63 16 44 H 0.10 0.52 6.47 -51.93 -0.34 0.18 16 45 H 0.07 0.31 7.88 -51.93 -0.41 -0.10 16 46 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.07 0.32 7.88 -51.93 -0.41 -0.09 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -34.25 400.43 -9.20 -43.45 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.46 Total: 8.67 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.73 Total: 3.52 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.62 Total: -57.74 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.40 Total: -20.97 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.25 -9.20 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958346083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.463 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds