Wall clock time and date at job start Tue Mar 31 2020 18:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36768 * 125.80199 * 2 1 4 4 C 1.47268 * 126.94041 * 359.97438 * 3 2 1 5 5 O 1.21624 * 120.00001 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99657 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99538 * 180.02562 * 6 4 3 8 8 C 1.53007 * 109.47149 * 179.97438 * 7 6 4 9 9 H 1.09000 * 110.63975 * 51.85519 * 8 7 6 10 10 C 1.54315 * 110.71722 * 288.52141 * 8 7 6 11 11 N 1.47023 * 107.27241 * 219.44307 * 10 8 7 12 12 C 1.36938 * 125.65186 * 178.96689 * 11 10 8 13 13 H 1.07999 * 119.99952 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00074 * 179.97438 * 12 11 10 15 15 N 1.31616 * 119.99665 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00169 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47215 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47352 * 119.99940 * 16 14 12 19 19 H 1.48501 * 109.47194 * 240.00360 * 16 14 12 20 20 C 1.47426 * 108.69981 * 358.93706 * 11 10 8 21 21 C 1.54907 * 104.82942 * 24.13288 * 20 11 10 22 22 H 1.09005 * 111.04094 * 81.08152 * 21 20 11 23 23 O 1.42903 * 111.00431 * 204.90944 * 21 20 11 24 24 C 1.46687 * 106.11708 * 180.24765 * 3 2 1 25 25 C 1.34483 * 106.33197 * 359.62249 * 24 3 2 26 26 N 1.34661 * 125.80286 * 180.02562 * 2 1 3 27 27 C 1.46499 * 124.85060 * 359.95483 * 26 2 1 28 28 C 1.53003 * 109.47126 * 120.00074 * 27 26 2 29 29 C 1.52996 * 109.47330 * 240.00478 * 27 26 2 30 30 H 1.09006 * 109.47292 * 89.98003 * 1 2 3 31 31 H 1.09005 * 109.47420 * 209.97091 * 1 2 3 32 32 H 1.08993 * 109.47398 * 329.97564 * 1 2 3 33 33 H 0.96993 * 120.00285 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.47659 * 59.99915 * 7 6 4 35 35 H 1.09007 * 109.46961 * 299.99408 * 7 6 4 36 36 H 1.09003 * 109.88697 * 338.85781 * 10 8 7 37 37 H 1.09000 * 109.88663 * 100.02422 * 10 8 7 38 38 H 0.97001 * 120.00180 * 180.02562 * 15 14 12 39 39 H 1.08994 * 110.37345 * 265.29076 * 20 11 10 40 40 H 1.09007 * 110.36591 * 142.96519 * 20 11 10 41 41 H 0.96700 * 114.00311 * 292.19952 * 23 21 20 42 42 H 1.07996 * 126.83254 * 179.75126 * 24 3 2 43 43 H 1.08006 * 125.57512 * 180.16004 * 25 24 3 44 44 H 1.09006 * 109.47249 * 0.02562 * 27 26 2 45 45 H 1.09006 * 109.46572 * 60.00179 * 28 27 26 46 46 H 1.08998 * 109.47293 * 179.97438 * 28 27 26 47 47 H 1.08998 * 109.47522 * 300.00564 * 28 27 26 48 48 H 1.08993 * 109.47392 * 60.00028 * 29 27 26 49 49 H 1.08998 * 109.47415 * 180.02562 * 29 27 26 50 50 H 1.08996 * 109.46772 * 299.99803 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8701 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0015 6 7 2.7849 3.5054 -0.0010 7 6 2.3503 4.9044 -0.0009 8 6 3.5766 5.8195 -0.0009 9 1 4.2613 5.5444 -0.8030 10 6 4.2882 5.7784 1.3678 11 7 4.7237 7.1488 1.6747 12 6 5.3774 7.5428 2.8116 13 1 5.6143 6.8184 3.5768 14 6 5.7357 8.8732 2.9805 15 7 5.4475 9.7558 2.0476 16 14 6.6269 9.4108 4.5316 17 1 6.8308 8.2365 5.4176 18 1 7.9441 9.9928 4.1693 19 1 5.8135 10.4304 5.2416 20 6 4.3405 8.0283 0.5553 21 6 3.1520 7.3064 -0.1273 22 1 2.2209 7.4938 0.4076 23 8 3.0380 7.6917 -1.4987 24 6 3.6882 0.6151 -0.0061 25 6 3.6096 -0.7274 -0.0007 26 7 2.2947 -1.0921 -0.0005 27 6 1.8094 -2.4744 -0.0002 28 6 2.3202 -3.1946 -1.2497 29 6 2.3216 -3.1945 1.2488 30 1 -0.3634 0.0004 -1.0277 31 1 -0.3634 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 3.7310 3.2914 -0.0006 34 1 1.7521 5.0991 0.8892 35 1 1.7515 5.0989 -0.8908 36 1 3.5971 5.4286 2.1347 37 1 5.1534 5.1174 1.3161 38 1 5.6982 10.6854 2.1654 39 1 5.1701 8.1369 -0.1432 40 1 4.0279 9.0035 0.9289 41 1 2.7747 8.6132 -1.6278 42 1 4.5889 1.2109 -0.0115 43 1 4.4498 -1.4060 -0.0006 44 1 0.7194 -2.4768 0.0001 45 1 3.4103 -3.1922 -1.2503 46 1 1.9595 -4.2232 -1.2493 47 1 1.9553 -2.6816 -2.1395 48 1 1.9577 -2.6815 2.1389 49 1 1.9609 -4.2231 1.2488 50 1 3.4116 -3.1922 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958346083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:13 Heat of formation + Delta-G solvation = -43.752040 kcal Electronic energy + Delta-G solvation = -28990.878338 eV Core-core repulsion = 25018.360467 eV Total energy + Delta-G solvation = -3972.517870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.42282 -40.50976 -39.55003 -36.64985 -36.14650 -36.01574 -34.02458 -32.55849 -31.70268 -30.55797 -29.25532 -28.18970 -27.61684 -26.96302 -25.26303 -23.39690 -23.07654 -22.22968 -21.41030 -20.52353 -19.54223 -18.93973 -18.41433 -18.12859 -17.20474 -16.92172 -16.71307 -16.47192 -16.00029 -15.66904 -15.48702 -15.32472 -14.74991 -14.69534 -14.42638 -14.32026 -14.06629 -13.97805 -13.94122 -13.64220 -13.58644 -13.37708 -13.23791 -13.09847 -13.03356 -12.94179 -12.78239 -12.45481 -12.34311 -12.28306 -12.19513 -11.95674 -11.90526 -11.83241 -11.38809 -10.94644 -10.76091 -10.71422 -10.08493 -9.49418 -9.06420 -8.92787 -7.79923 -5.25259 0.78001 1.47389 1.48142 1.54652 1.58661 1.82806 2.42182 2.48425 2.61793 3.21503 3.30853 3.62164 3.64796 3.74664 3.80315 3.92241 3.98163 4.02541 4.09139 4.10790 4.21458 4.36790 4.43710 4.48409 4.56022 4.62400 4.66910 4.69685 4.76775 4.82233 4.83020 4.87121 4.90585 4.97355 4.99747 5.07342 5.24559 5.24720 5.25714 5.31177 5.42595 5.47715 5.52195 5.73503 5.83664 6.16083 6.24402 6.40937 6.70452 6.89295 7.07483 7.37873 7.73251 8.36458 9.22345 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.002283 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.881242 B =12263.280157 C =13269.623475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.098 3.902 3 C -0.270 4.270 4 C 0.585 3.415 5 O -0.592 6.592 6 N -0.715 5.715 7 C 0.150 3.850 8 C -0.086 4.086 9 H 0.091 0.909 10 C 0.142 3.858 11 N -0.624 5.624 12 C -0.238 4.238 13 H 0.084 0.916 14 C -0.068 4.068 15 N -0.949 5.949 16 Si 0.982 3.018 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.291 1.291 20 C 0.135 3.865 21 C 0.096 3.904 22 H 0.067 0.933 23 O -0.568 6.568 24 C -0.184 4.184 25 C -0.005 4.005 26 N -0.430 5.430 27 C 0.112 3.888 28 C -0.158 4.158 29 C -0.159 4.159 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.409 0.591 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.035 0.965 38 H 0.248 0.752 39 H -0.007 1.007 40 H 0.080 0.920 41 H 0.394 0.606 42 H 0.154 0.846 43 H 0.194 0.806 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.097 0.903 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -28.055 -6.510 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 C -0.280 4.280 4 C 0.376 3.624 5 O -0.475 6.475 6 N -0.366 5.366 7 C 0.026 3.974 8 C -0.105 4.105 9 H 0.109 0.891 10 C 0.017 3.983 11 N -0.351 5.351 12 C -0.367 4.367 13 H 0.102 0.898 14 C -0.260 4.260 15 N -0.599 5.599 16 Si 0.811 3.189 17 H -0.191 1.191 18 H -0.219 1.219 19 H -0.218 1.218 20 C 0.009 3.991 21 C 0.036 3.964 22 H 0.085 0.915 23 O -0.375 6.375 24 C -0.207 4.207 25 C -0.131 4.131 26 N -0.106 5.106 27 C 0.012 3.988 28 C -0.215 4.215 29 C -0.217 4.217 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.245 0.755 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.011 0.989 40 H 0.098 0.902 41 H 0.244 0.756 42 H 0.172 0.828 43 H 0.211 0.789 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.773 -28.677 -6.509 30.416 hybrid contribution 1.019 1.568 0.807 2.037 sum -6.754 -27.108 -5.702 28.513 Atomic orbital electron populations 1.20515 0.86697 1.03976 1.03522 1.20477 0.94340 0.85674 1.01612 1.20151 0.95010 0.91037 1.21807 1.17767 0.84833 0.85160 0.74679 1.90680 1.18052 1.85203 1.53577 1.45694 1.10323 1.05328 1.75237 1.21086 0.95188 0.79616 1.01492 1.22213 0.96800 0.93710 0.97821 0.89082 1.21491 0.96183 0.87023 0.93651 1.44625 1.67769 1.04092 1.18593 1.19507 1.28670 0.93358 0.95120 0.89848 1.25661 1.02669 0.96089 1.01608 1.70014 1.52985 1.02100 1.34818 0.84946 0.77324 0.77988 0.78674 1.19069 1.21893 1.21754 1.22312 0.92823 0.96086 0.87900 1.22992 0.97417 0.93867 0.82166 0.91511 1.86347 1.92407 1.34525 1.24264 1.22225 0.95183 0.94637 1.08680 1.21984 0.86419 0.95795 1.08902 1.44100 1.05631 1.06173 1.54694 1.21842 1.01146 0.77598 0.98233 1.22151 1.02525 1.01525 0.95329 1.22161 1.02544 1.01566 0.95400 0.90190 0.89423 0.90606 0.75496 0.92489 0.91562 0.95176 0.94703 0.94203 0.98907 0.90213 0.75649 0.82817 0.78919 0.87340 0.91335 0.88455 0.92842 0.92961 0.88430 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.34 71.23 0.67 -1.11 16 2 C 0.10 2.21 6.89 41.78 0.29 2.49 16 3 C -0.27 -7.30 6.29 -19.04 -0.12 -7.42 16 4 C 0.58 19.04 7.81 86.62 0.68 19.71 16 5 O -0.59 -22.66 14.81 -4.11 -0.06 -22.72 16 6 N -0.72 -21.52 5.47 -466.50 -2.55 -24.07 16 7 C 0.15 4.97 5.02 86.38 0.43 5.41 16 8 C -0.09 -3.10 2.70 -9.61 -0.03 -3.12 16 9 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 10 C 0.14 5.88 6.75 86.73 0.59 6.46 16 11 N -0.62 -32.42 3.39 -692.00 -2.35 -34.77 16 12 C -0.24 -13.37 10.27 84.03 0.86 -12.51 16 13 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 14 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 15 N -0.95 -56.38 10.09 21.65 0.22 -56.16 16 16 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 20 C 0.13 6.70 5.62 86.85 0.49 7.19 16 21 C 0.10 3.77 3.88 31.98 0.12 3.89 16 22 H 0.07 2.56 8.05 -2.38 -0.02 2.54 16 23 O -0.57 -19.81 13.47 -148.98 -2.01 -21.82 16 24 C -0.18 -3.91 10.56 23.62 0.25 -3.66 16 25 C 0.00 -0.08 10.17 83.12 0.85 0.77 16 26 N -0.43 -6.98 2.57 -487.57 -1.25 -8.23 16 27 C 0.11 1.00 3.45 44.99 0.16 1.16 16 28 C -0.16 -0.97 9.23 71.98 0.66 -0.31 16 29 C -0.16 -1.04 9.23 71.98 0.66 -0.38 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.09 1.16 6.96 -2.38 -0.02 1.15 16 32 H 0.08 1.94 6.47 -2.39 -0.02 1.93 16 33 H 0.41 10.68 7.59 -92.71 -0.70 9.97 16 34 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 35 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.08 4.44 5.88 -2.38 -0.01 4.43 16 41 H 0.39 10.63 9.12 -74.06 -0.68 9.95 16 42 H 0.15 2.81 7.69 -2.91 -0.02 2.79 16 43 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.11 0.80 6.47 -2.38 -0.02 0.78 16 45 H 0.07 0.40 7.88 -2.38 -0.02 0.39 16 46 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 50 H 0.07 0.43 7.88 -2.39 -0.02 0.42 16 Total: -1.00 -75.56 400.43 0.62 -74.94 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.43 Total: 29.95 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 7.02 Total: 15.19 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -5.93 Total: -123.23 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -2.07 Total: -44.54 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.56 0.62 -74.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958346083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.184 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds