Wall clock time and date at job start Tue Mar 31 2020 18:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36769 * 125.80034 * 2 1 4 4 C 1.47260 * 126.94291 * 359.94191 * 3 2 1 5 5 O 1.21628 * 120.00172 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00124 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99697 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46719 * 180.02562 * 7 6 4 9 9 H 1.08995 * 110.64028 * 303.31454 * 8 7 6 10 10 C 1.54324 * 110.71890 * 66.45585 * 8 7 6 11 11 N 1.47020 * 107.39983 * 140.47837 * 10 8 7 12 12 C 1.36946 * 125.64749 * 181.10549 * 11 10 8 13 13 H 1.08000 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99867 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47426 * 119.99468 * 16 14 12 19 19 H 1.48497 * 109.47269 * 239.99725 * 16 14 12 20 20 C 1.47743 * 108.53125 * 1.18235 * 11 10 8 21 21 C 1.54909 * 104.83995 * 335.74644 * 20 11 10 22 22 H 1.08989 * 111.04037 * 279.00643 * 21 20 11 23 23 O 1.42904 * 111.00107 * 155.16655 * 21 20 11 24 24 C 1.46694 * 106.11691 * 180.20638 * 3 2 1 25 25 C 1.34486 * 106.32895 * 359.62632 * 24 3 2 26 26 N 1.34660 * 125.80176 * 179.97438 * 2 1 3 27 27 C 1.46500 * 124.85365 * 0.02562 * 26 2 1 28 28 C 1.52991 * 109.47273 * 119.99370 * 27 26 2 29 29 C 1.52997 * 109.46939 * 240.00013 * 27 26 2 30 30 H 1.08994 * 109.47444 * 90.02665 * 1 2 3 31 31 H 1.09003 * 109.46607 * 210.02363 * 1 2 3 32 32 H 1.08997 * 109.47089 * 330.02249 * 1 2 3 33 33 H 0.97000 * 119.99671 * 0.02562 * 6 4 3 34 34 H 1.08996 * 109.47222 * 60.01303 * 7 6 4 35 35 H 1.08997 * 109.47438 * 300.00126 * 7 6 4 36 36 H 1.09002 * 109.88322 * 259.97367 * 10 8 7 37 37 H 1.09000 * 109.88025 * 20.98532 * 10 8 7 38 38 H 0.96998 * 119.99524 * 180.02562 * 15 14 12 39 39 H 1.09003 * 110.29227 * 216.94505 * 20 11 10 40 40 H 1.08996 * 110.53057 * 94.67717 * 20 11 10 41 41 H 0.96704 * 113.99765 * 67.80908 * 23 21 20 42 42 H 1.07999 * 126.83630 * 179.74901 * 24 3 2 43 43 H 1.07998 * 125.57187 * 180.08954 * 25 24 3 44 44 H 1.09001 * 109.46463 * 359.97438 * 27 26 2 45 45 H 1.09006 * 109.47427 * 60.00192 * 28 27 26 46 46 H 1.08998 * 109.47182 * 180.02562 * 28 27 26 47 47 H 1.08998 * 109.47568 * 300.00399 * 28 27 26 48 48 H 1.08994 * 109.47817 * 59.99770 * 29 27 26 49 49 H 1.08998 * 109.46939 * 179.97438 * 29 27 26 50 50 H 1.09001 * 109.47143 * 299.99094 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 -0.0012 5 8 0.6839 2.7839 -0.0019 6 7 2.7850 3.5054 -0.0005 7 6 2.3503 4.9045 -0.0023 8 6 3.5766 5.8195 -0.0017 9 1 4.2186 5.6010 0.8516 10 6 4.3605 5.6827 -1.3239 11 7 4.8142 7.0276 -1.7072 12 6 5.5270 7.3383 -2.8345 13 1 5.8024 6.5601 -3.5309 14 6 5.8965 8.6534 -3.0815 15 7 5.5613 9.6016 -2.2326 16 14 6.8694 9.0771 -4.6188 17 1 7.1185 7.8411 -5.4033 18 1 6.0969 10.0403 -5.4438 19 1 8.1668 9.6866 -4.2311 20 6 4.3734 7.9847 -0.6717 21 6 3.1487 7.3109 -0.0041 22 1 2.2480 7.4580 -0.6000 23 8 2.9623 7.7924 1.3284 24 6 3.6883 0.6152 -0.0051 25 6 3.6096 -0.7274 0.0007 26 7 2.2947 -1.0922 0.0005 27 6 1.8095 -2.4744 0.0006 28 6 2.3213 -3.1947 -1.2483 29 6 2.3206 -3.1943 1.2501 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 3.7311 3.2914 0.0004 34 1 1.7506 5.0997 0.8867 35 1 1.7532 5.0983 -0.8933 36 1 5.2204 5.0286 -1.1791 37 1 3.7115 5.2754 -2.0992 38 1 5.8191 10.5206 -2.4054 39 1 4.0833 8.9303 -1.1298 40 1 5.1640 8.1459 0.0612 41 1 2.6942 8.7202 1.3774 42 1 4.5891 1.2110 -0.0102 43 1 4.4498 -1.4059 0.0006 44 1 0.7195 -2.4767 0.0006 45 1 3.4114 -3.1924 -1.2481 46 1 1.9599 -4.2230 -1.2485 47 1 1.9572 -2.6819 -2.1385 48 1 1.9559 -2.6812 2.1399 49 1 1.9592 -4.2226 1.2504 50 1 3.4106 -3.1920 1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958346084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:18 Heat of formation + Delta-G solvation = -20.088057 kcal Electronic energy + Delta-G solvation = -29017.631554 eV Core-core repulsion = 25046.139831 eV Total energy + Delta-G solvation = -3971.491723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63573 -39.16561 -37.99228 -35.58524 -35.06871 -34.47129 -32.22151 -31.70976 -30.37226 -29.32362 -27.85026 -27.52684 -26.51050 -25.39979 -23.72886 -22.63578 -22.04158 -20.49417 -19.82024 -19.36687 -18.76087 -17.47504 -16.95832 -16.78135 -16.10623 -15.56890 -15.47905 -15.09282 -14.84291 -14.72869 -14.04368 -13.85620 -13.80543 -13.57866 -13.39893 -13.10489 -12.94905 -12.93720 -12.77890 -12.65620 -12.52180 -12.44720 -12.31519 -11.88369 -11.73947 -11.62072 -11.54227 -11.45001 -11.20073 -10.90186 -10.77263 -10.55472 -10.00480 -9.90869 -9.71171 -9.53634 -9.09713 -8.84529 -8.68780 -8.62653 -8.19870 -6.87246 -5.68900 -3.10737 1.76105 2.34952 2.53824 3.38802 3.44272 3.46856 3.61361 3.74099 4.07627 4.38485 4.44428 4.45074 4.57461 4.76487 4.78533 4.95981 5.04217 5.07207 5.10674 5.15189 5.20177 5.32381 5.35661 5.44747 5.48054 5.49176 5.56358 5.59286 5.59860 5.73799 5.82614 5.89712 6.03006 6.08929 6.11586 6.21677 6.31147 6.48409 6.61407 6.69182 6.78383 6.89933 6.97959 7.12224 7.39086 7.57879 7.77255 7.87625 8.20519 8.32285 8.58796 9.17371 9.78544 10.42627 11.35627 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.002328 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.939697 B =12022.171968 C =13135.190727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.103 3.897 3 C -0.233 4.233 4 C 0.590 3.410 5 O -0.558 6.558 6 N -0.720 5.720 7 C 0.136 3.864 8 C -0.104 4.104 9 H 0.085 0.915 10 C 0.141 3.859 11 N -0.602 5.602 12 C -0.221 4.221 13 H 0.080 0.920 14 C -0.012 4.012 15 N -0.923 5.923 16 Si 0.916 3.084 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.128 3.872 21 C 0.081 3.919 22 H 0.061 0.939 23 O -0.569 6.569 24 C -0.165 4.165 25 C -0.016 4.016 26 N -0.437 5.437 27 C 0.120 3.880 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.030 0.970 38 H 0.252 0.748 39 H 0.108 0.892 40 H 0.022 0.978 41 H 0.376 0.624 42 H 0.145 0.855 43 H 0.162 0.838 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 -24.573 6.860 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.013 4.013 3 C -0.243 4.243 4 C 0.379 3.621 5 O -0.439 6.439 6 N -0.371 5.371 7 C 0.013 3.987 8 C -0.123 4.123 9 H 0.103 0.897 10 C 0.015 3.985 11 N -0.329 5.329 12 C -0.349 4.349 13 H 0.098 0.902 14 C -0.208 4.208 15 N -0.572 5.572 16 Si 0.747 3.253 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.217 1.217 20 C 0.003 3.997 21 C 0.021 3.979 22 H 0.079 0.921 23 O -0.374 6.374 24 C -0.189 4.189 25 C -0.142 4.142 26 N -0.115 5.115 27 C 0.018 3.982 28 C -0.220 4.220 29 C -0.220 4.220 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.126 0.874 40 H 0.040 0.960 41 H 0.223 0.777 42 H 0.163 0.837 43 H 0.180 0.820 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.395 -25.152 6.891 27.397 hybrid contribution 1.154 0.659 -0.931 1.622 sum -7.240 -24.493 5.961 26.227 Atomic orbital electron populations 1.20560 0.87351 1.03867 1.03282 1.20278 0.93639 0.85177 1.02230 1.20144 0.93208 0.91980 1.18982 1.17332 0.85280 0.84038 0.75494 1.90708 1.16730 1.84551 1.51869 1.45796 1.09832 1.06104 1.75331 1.21361 0.96328 0.78961 1.02079 1.22393 0.96220 0.94111 0.99595 0.89671 1.21361 0.95269 0.89500 0.92353 1.44404 1.64198 1.01114 1.23162 1.19143 1.25934 0.92923 0.96904 0.90224 1.24805 1.01319 0.95721 0.98934 1.69777 1.51027 1.00218 1.36179 0.85970 0.79264 0.78035 0.82067 1.20484 1.21706 1.21739 1.22575 0.91366 0.95675 0.90112 1.23307 0.99071 0.92962 0.82580 0.92134 1.86377 1.91940 1.31338 1.27699 1.22038 0.95860 0.93537 1.07501 1.21510 0.85603 0.95961 1.11113 1.43820 1.05870 1.05406 1.56376 1.21501 1.00443 0.79326 0.96931 1.22167 1.02402 1.00680 0.96780 1.22171 1.02412 1.00698 0.96763 0.90623 0.92252 0.87979 0.76549 0.91384 0.91487 0.95807 0.95255 0.93721 0.87419 0.95986 0.77721 0.83697 0.82025 0.88169 0.91563 0.90641 0.91616 0.91671 0.90644 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.34 36.01 0.34 -0.62 16 2 C 0.10 1.22 6.89 -81.88 -0.56 0.65 16 3 C -0.23 -3.20 6.29 -103.35 -0.65 -3.85 16 4 C 0.59 9.52 7.81 -12.59 -0.10 9.42 16 5 O -0.56 -10.42 14.81 5.25 0.08 -10.34 16 6 N -0.72 -10.95 5.40 -61.43 -0.33 -11.28 16 7 C 0.14 2.27 4.99 -4.04 -0.02 2.25 16 8 C -0.10 -1.89 2.75 -88.78 -0.24 -2.14 16 9 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 10 C 0.14 2.94 6.52 -3.06 -0.02 2.92 16 11 N -0.60 -15.42 3.41 -169.81 -0.58 -16.00 16 12 C -0.22 -6.15 10.28 -15.05 -0.15 -6.30 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 15 N -0.92 -26.76 10.11 55.49 0.56 -26.20 16 16 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 C 0.13 3.11 5.65 -2.35 -0.01 3.09 16 21 C 0.08 1.59 3.88 -24.58 -0.10 1.49 16 22 H 0.06 1.17 8.05 -51.94 -0.42 0.75 16 23 O -0.57 -10.14 13.47 -35.23 -0.47 -10.61 16 24 C -0.17 -1.88 10.56 -37.50 -0.40 -2.27 16 25 C -0.02 -0.15 10.17 -16.82 -0.17 -0.32 16 26 N -0.44 -4.03 2.57 -105.47 -0.27 -4.30 16 27 C 0.12 0.71 3.45 -67.94 -0.23 0.48 16 28 C -0.16 -0.79 9.23 37.15 0.34 -0.45 16 29 C -0.16 -0.76 9.23 37.16 0.34 -0.42 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.44 6.96 -51.93 -0.36 0.08 16 32 H 0.10 1.26 6.47 -51.93 -0.34 0.93 16 33 H 0.40 5.39 7.45 -40.82 -0.30 5.08 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.62 7.76 -51.93 -0.40 0.21 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.11 2.89 5.89 -51.93 -0.31 2.58 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.38 5.22 9.12 45.56 0.42 5.64 16 42 H 0.15 1.43 7.70 -52.49 -0.40 1.03 16 43 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.10 0.52 6.47 -51.93 -0.34 0.18 16 45 H 0.07 0.32 7.88 -51.93 -0.41 -0.08 16 46 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.07 0.31 7.88 -51.93 -0.41 -0.10 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -34.23 400.28 -9.21 -43.44 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.46 Total: 8.74 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.74 Total: 3.50 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.62 Total: -57.78 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.40 Total: -20.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.23 -9.21 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958346084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.349 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds