Wall clock time and date at job start Tue Mar 31 2020 18:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36769 * 125.80034 * 2 1 4 4 C 1.47260 * 126.94291 * 359.94191 * 3 2 1 5 5 O 1.21628 * 120.00172 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00124 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99697 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46719 * 180.02562 * 7 6 4 9 9 H 1.08995 * 110.64028 * 303.31454 * 8 7 6 10 10 C 1.54324 * 110.71890 * 66.45585 * 8 7 6 11 11 N 1.47020 * 107.39983 * 140.47837 * 10 8 7 12 12 C 1.36946 * 125.64749 * 181.10549 * 11 10 8 13 13 H 1.08000 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.38814 * 119.99867 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99829 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47426 * 119.99468 * 16 14 12 19 19 H 1.48497 * 109.47269 * 239.99725 * 16 14 12 20 20 C 1.47743 * 108.53125 * 1.18235 * 11 10 8 21 21 C 1.54909 * 104.83995 * 335.74644 * 20 11 10 22 22 H 1.08989 * 111.04037 * 279.00643 * 21 20 11 23 23 O 1.42904 * 111.00107 * 155.16655 * 21 20 11 24 24 C 1.46694 * 106.11691 * 180.20638 * 3 2 1 25 25 C 1.34486 * 106.32895 * 359.62632 * 24 3 2 26 26 N 1.34660 * 125.80176 * 179.97438 * 2 1 3 27 27 C 1.46500 * 124.85365 * 0.02562 * 26 2 1 28 28 C 1.52991 * 109.47273 * 119.99370 * 27 26 2 29 29 C 1.52997 * 109.46939 * 240.00013 * 27 26 2 30 30 H 1.08994 * 109.47444 * 90.02665 * 1 2 3 31 31 H 1.09003 * 109.46607 * 210.02363 * 1 2 3 32 32 H 1.08997 * 109.47089 * 330.02249 * 1 2 3 33 33 H 0.97000 * 119.99671 * 0.02562 * 6 4 3 34 34 H 1.08996 * 109.47222 * 60.01303 * 7 6 4 35 35 H 1.08997 * 109.47438 * 300.00126 * 7 6 4 36 36 H 1.09002 * 109.88322 * 259.97367 * 10 8 7 37 37 H 1.09000 * 109.88025 * 20.98532 * 10 8 7 38 38 H 0.96998 * 119.99524 * 180.02562 * 15 14 12 39 39 H 1.09003 * 110.29227 * 216.94505 * 20 11 10 40 40 H 1.08996 * 110.53057 * 94.67717 * 20 11 10 41 41 H 0.96704 * 113.99765 * 67.80908 * 23 21 20 42 42 H 1.07999 * 126.83630 * 179.74901 * 24 3 2 43 43 H 1.07998 * 125.57187 * 180.08954 * 25 24 3 44 44 H 1.09001 * 109.46463 * 359.97438 * 27 26 2 45 45 H 1.09006 * 109.47427 * 60.00192 * 28 27 26 46 46 H 1.08998 * 109.47182 * 180.02562 * 28 27 26 47 47 H 1.08998 * 109.47568 * 300.00399 * 28 27 26 48 48 H 1.08994 * 109.47817 * 59.99770 * 29 27 26 49 49 H 1.08998 * 109.46939 * 179.97438 * 29 27 26 50 50 H 1.09001 * 109.47143 * 299.99094 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 -0.0012 5 8 0.6839 2.7839 -0.0019 6 7 2.7850 3.5054 -0.0005 7 6 2.3503 4.9045 -0.0023 8 6 3.5766 5.8195 -0.0017 9 1 4.2186 5.6010 0.8516 10 6 4.3605 5.6827 -1.3239 11 7 4.8142 7.0276 -1.7072 12 6 5.5270 7.3383 -2.8345 13 1 5.8024 6.5601 -3.5309 14 6 5.8965 8.6534 -3.0815 15 7 5.5613 9.6016 -2.2326 16 14 6.8694 9.0771 -4.6188 17 1 7.1185 7.8411 -5.4033 18 1 6.0969 10.0403 -5.4438 19 1 8.1668 9.6866 -4.2311 20 6 4.3734 7.9847 -0.6717 21 6 3.1487 7.3109 -0.0041 22 1 2.2480 7.4580 -0.6000 23 8 2.9623 7.7924 1.3284 24 6 3.6883 0.6152 -0.0051 25 6 3.6096 -0.7274 0.0007 26 7 2.2947 -1.0922 0.0005 27 6 1.8095 -2.4744 0.0006 28 6 2.3213 -3.1947 -1.2483 29 6 2.3206 -3.1943 1.2501 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 3.7311 3.2914 0.0004 34 1 1.7506 5.0997 0.8867 35 1 1.7532 5.0983 -0.8933 36 1 5.2204 5.0286 -1.1791 37 1 3.7115 5.2754 -2.0992 38 1 5.8191 10.5206 -2.4054 39 1 4.0833 8.9303 -1.1298 40 1 5.1640 8.1459 0.0612 41 1 2.6942 8.7202 1.3774 42 1 4.5891 1.2110 -0.0102 43 1 4.4498 -1.4059 0.0006 44 1 0.7195 -2.4767 0.0006 45 1 3.4114 -3.1924 -1.2481 46 1 1.9599 -4.2230 -1.2485 47 1 1.9572 -2.6819 -2.1385 48 1 1.9559 -2.6812 2.1399 49 1 1.9592 -4.2226 1.2504 50 1 3.4106 -3.1920 1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958346084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:17 Heat of formation + Delta-G solvation = -43.798936 kcal Electronic energy + Delta-G solvation = -29018.659735 eV Core-core repulsion = 25046.139831 eV Total energy + Delta-G solvation = -3972.519904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.42278 -40.51123 -39.53651 -36.64790 -36.14617 -36.01072 -34.01232 -32.55839 -31.69955 -30.55765 -29.24832 -28.19034 -27.61575 -26.97445 -25.26126 -23.40887 -23.08344 -22.23198 -21.35687 -20.54411 -19.54137 -18.93746 -18.41850 -18.12800 -17.20507 -16.90969 -16.71164 -16.48226 -16.00324 -15.66634 -15.50151 -15.31833 -14.74753 -14.69679 -14.43904 -14.31614 -14.03421 -13.99207 -13.94182 -13.65440 -13.58254 -13.38061 -13.22967 -13.09772 -13.03305 -12.94051 -12.78321 -12.44570 -12.34824 -12.28275 -12.19628 -11.95673 -11.89853 -11.83084 -11.38612 -10.94996 -10.76487 -10.71526 -10.08463 -9.49441 -9.06470 -8.92731 -7.80160 -5.25151 0.77916 1.47453 1.48150 1.54552 1.58678 1.82788 2.41809 2.48659 2.61730 3.21321 3.30912 3.61878 3.64686 3.75249 3.80299 3.91882 3.98159 4.02507 4.09090 4.10615 4.21405 4.36808 4.43507 4.48118 4.55973 4.62010 4.67043 4.69704 4.76339 4.81949 4.83118 4.87129 4.90601 4.97748 4.99670 5.07330 5.24383 5.24883 5.26318 5.30987 5.42276 5.47230 5.51850 5.73221 5.83604 6.16014 6.23927 6.40900 6.70227 6.89233 7.06980 7.37714 7.72870 8.36687 9.22536 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.002328 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.939697 B =12022.171968 C =13135.190727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.098 3.902 3 C -0.270 4.270 4 C 0.585 3.415 5 O -0.592 6.592 6 N -0.715 5.715 7 C 0.151 3.849 8 C -0.087 4.087 9 H 0.091 0.909 10 C 0.141 3.859 11 N -0.623 5.623 12 C -0.237 4.237 13 H 0.084 0.916 14 C -0.068 4.068 15 N -0.949 5.949 16 Si 0.982 3.018 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.134 3.866 21 C 0.097 3.903 22 H 0.067 0.933 23 O -0.568 6.568 24 C -0.184 4.184 25 C -0.005 4.005 26 N -0.430 5.430 27 C 0.112 3.888 28 C -0.159 4.159 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.248 0.752 39 H 0.080 0.920 40 H -0.006 1.006 41 H 0.394 0.606 42 H 0.154 0.846 43 H 0.194 0.806 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.097 0.903 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 -27.581 6.830 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 C -0.280 4.280 4 C 0.376 3.624 5 O -0.475 6.475 6 N -0.366 5.366 7 C 0.026 3.974 8 C -0.106 4.106 9 H 0.109 0.891 10 C 0.016 3.984 11 N -0.351 5.351 12 C -0.366 4.366 13 H 0.102 0.898 14 C -0.260 4.260 15 N -0.599 5.599 16 Si 0.811 3.189 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.219 1.219 20 C 0.008 3.992 21 C 0.036 3.964 22 H 0.085 0.915 23 O -0.375 6.375 24 C -0.207 4.207 25 C -0.131 4.131 26 N -0.106 5.106 27 C 0.012 3.988 28 C -0.216 4.216 29 C -0.216 4.216 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.012 0.988 41 H 0.244 0.756 42 H 0.171 0.829 43 H 0.211 0.789 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.115 0.885 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.138 -28.201 6.875 30.146 hybrid contribution 1.068 1.512 -0.887 2.053 sum -7.070 -26.688 5.988 28.251 Atomic orbital electron populations 1.20516 0.86681 1.04054 1.03457 1.20479 0.94346 0.85666 1.01600 1.20149 0.94998 0.91047 1.21814 1.17765 0.84832 0.85155 0.74676 1.90680 1.18037 1.85202 1.53582 1.45695 1.10325 1.05348 1.75238 1.21076 0.95180 0.79595 1.01502 1.22218 0.96457 0.93564 0.98343 0.89116 1.21473 0.95802 0.87578 0.93520 1.44687 1.64198 1.03216 1.22976 1.19506 1.26046 0.93283 0.97772 0.89820 1.25660 1.02694 0.95725 1.01953 1.70012 1.51984 1.00196 1.37734 0.84947 0.77437 0.77934 0.78626 1.19054 1.21762 1.21913 1.22360 0.92317 0.95149 0.89352 1.22984 0.97065 0.93218 0.83111 0.91506 1.86350 1.91836 1.33068 1.26274 1.22226 0.95188 0.94644 1.08676 1.21983 0.86424 0.95788 1.08905 1.44102 1.05625 1.06179 1.54692 1.21840 1.01148 0.77591 0.98231 1.22155 1.02518 1.01556 0.95394 1.22156 1.02544 1.01549 0.95336 0.90398 0.89322 0.90480 0.75510 0.91493 0.92548 0.94705 0.95204 0.94209 0.90258 0.98818 0.75643 0.82853 0.78925 0.87330 0.91347 0.88425 0.93002 0.92809 0.88451 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.34 71.24 0.67 -1.11 16 2 C 0.10 2.22 6.89 41.78 0.29 2.51 16 3 C -0.27 -7.33 6.29 -19.04 -0.12 -7.45 16 4 C 0.58 19.09 7.81 86.61 0.68 19.77 16 5 O -0.59 -22.66 14.81 -4.12 -0.06 -22.72 16 6 N -0.72 -21.62 5.40 -466.52 -2.52 -24.14 16 7 C 0.15 4.98 4.99 86.38 0.43 5.41 16 8 C -0.09 -3.11 2.75 -9.60 -0.03 -3.14 16 9 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 10 C 0.14 5.85 6.52 86.73 0.57 6.42 16 11 N -0.62 -32.38 3.41 -691.17 -2.35 -34.73 16 12 C -0.24 -13.33 10.28 84.03 0.86 -12.47 16 13 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 14 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 15 N -0.95 -56.37 10.11 21.65 0.22 -56.16 16 16 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 20 C 0.13 6.66 5.65 86.79 0.49 7.15 16 21 C 0.10 3.79 3.88 31.99 0.12 3.91 16 22 H 0.07 2.56 8.05 -2.39 -0.02 2.54 16 23 O -0.57 -19.77 13.47 -148.98 -2.01 -21.78 16 24 C -0.18 -3.95 10.56 23.62 0.25 -3.70 16 25 C 0.00 -0.08 10.17 83.12 0.85 0.77 16 26 N -0.43 -7.03 2.57 -487.59 -1.25 -8.28 16 27 C 0.11 1.01 3.45 44.99 0.15 1.17 16 28 C -0.16 -1.07 9.23 71.98 0.66 -0.40 16 29 C -0.16 -0.97 9.23 71.98 0.66 -0.31 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.16 6.96 -2.39 -0.02 1.14 16 32 H 0.08 1.95 6.47 -2.39 -0.02 1.94 16 33 H 0.41 10.78 7.45 -92.71 -0.69 10.09 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.00 8.06 -2.39 -0.02 1.98 16 36 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.03 1.24 7.76 -2.39 -0.02 1.23 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.08 4.41 5.89 -2.39 -0.01 4.40 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.39 10.60 9.12 -74.05 -0.68 9.92 16 42 H 0.15 2.85 7.70 -2.91 -0.02 2.83 16 43 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.11 0.80 6.47 -2.39 -0.02 0.79 16 45 H 0.07 0.45 7.88 -2.38 -0.02 0.43 16 46 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 50 H 0.07 0.41 7.88 -2.39 -0.02 0.39 16 Total: -1.00 -75.48 400.28 0.64 -74.84 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.42 Total: 30.17 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 7.00 Total: 15.13 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.90 Total: -123.30 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -2.07 Total: -44.50 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.48 0.64 -74.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958346084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.037 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds