Wall clock time and date at job start Tue Mar 31 2020 19:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.66686 * 2 1 4 4 O 1.21279 * 119.99897 * 119.49894 * 3 2 1 5 5 N 1.34773 * 119.99883 * 299.49678 * 3 2 1 6 6 C 1.47681 * 134.45378 * 179.97438 * 5 3 2 7 7 C 1.53440 * 85.97193 * 155.71267 * 6 5 3 8 8 C 1.47672 * 134.45385 * 0.02562 * 5 3 2 9 9 C 1.52637 * 113.72867 * 268.85647 * 7 6 5 10 10 C 1.53189 * 109.33504 * 171.19837 * 9 7 6 11 11 C 1.52661 * 109.42575 * 58.93799 * 10 9 7 12 12 N 1.46895 * 109.35933 * 303.78274 * 11 10 9 13 13 C 1.36941 * 120.69102 * 235.30120 * 12 11 10 14 14 H 1.07999 * 119.99661 * 151.64486 * 13 12 11 15 15 C 1.38807 * 119.99838 * 331.63649 * 13 12 11 16 16 N 1.31624 * 119.99457 * 144.56047 * 15 13 12 17 17 Si 1.86800 * 120.00337 * 324.56411 * 15 13 12 18 18 H 1.48501 * 109.46989 * 269.99540 * 17 15 13 19 19 H 1.48504 * 109.47010 * 149.99505 * 17 15 13 20 20 H 1.48494 * 109.47068 * 29.99855 * 17 15 13 21 21 C 1.47121 * 118.61998 * 55.02664 * 12 11 10 22 22 C 1.53348 * 109.70133 * 120.51046 * 2 1 3 23 23 C 1.52935 * 108.66057 * 52.21460 * 22 2 1 24 24 N 1.45755 * 110.48068 * 50.77768 * 23 22 2 25 25 C 1.33345 * 124.10949 * 340.88631 * 24 23 22 26 26 O 1.21281 * 118.25207 * 182.26886 * 25 24 23 27 27 C 1.50180 * 123.50456 * 2.24662 * 25 24 23 28 28 H 1.09000 * 109.46940 * 60.00485 * 1 2 3 29 29 H 1.09005 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47738 * 299.99944 * 1 2 3 31 31 H 1.08996 * 113.78871 * 41.44982 * 6 5 3 32 32 H 1.08995 * 113.79429 * 269.98040 * 6 5 3 33 33 H 1.09002 * 113.79541 * 90.02586 * 8 5 3 34 34 H 1.08995 * 113.79746 * 318.54314 * 8 5 3 35 35 H 1.08996 * 109.49013 * 291.16181 * 9 7 6 36 36 H 1.08997 * 109.49022 * 51.21504 * 9 7 6 37 37 H 1.09006 * 109.48386 * 179.03070 * 10 9 7 38 38 H 1.08994 * 109.49058 * 299.07685 * 10 9 7 39 39 H 1.08996 * 109.44052 * 183.79373 * 11 10 9 40 40 H 1.09007 * 109.37024 * 63.72783 * 11 10 9 41 41 H 0.96993 * 120.00347 * 354.89172 * 16 15 13 42 42 H 1.09001 * 109.63790 * 68.55599 * 21 12 11 43 43 H 1.08998 * 109.64489 * 188.97664 * 21 12 11 44 44 H 1.08999 * 109.59918 * 171.97800 * 22 2 1 45 45 H 1.08996 * 109.60681 * 292.47029 * 22 2 1 46 46 H 1.09003 * 109.31707 * 290.45705 * 23 22 2 47 47 H 1.08994 * 109.12648 * 170.97542 * 23 22 2 48 48 H 0.97000 * 117.94306 * 160.91197 * 24 23 22 49 49 H 1.09004 * 109.40207 * 222.28519 * 27 25 24 50 50 H 1.09003 * 109.32983 * 102.50577 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.7283 1.8160 0.9142 5 7 1.7229 2.2470 -1.0159 6 6 2.0328 3.6549 -1.3365 7 6 1.7831 3.2637 -2.7991 8 6 0.9296 2.1102 -2.2539 9 6 3.0388 2.8036 -3.5348 10 6 2.6458 2.2338 -4.9014 11 6 1.9182 3.3061 -5.7084 12 7 0.7607 3.7893 -4.9439 13 6 -0.4967 3.7588 -5.4854 14 1 -1.3594 3.6647 -4.8425 15 6 -0.6625 3.8491 -6.8606 16 7 -1.6252 3.1748 -7.4530 17 14 0.4808 4.9273 -7.8705 18 1 -0.0839 6.2976 -7.9624 19 1 0.6220 4.3575 -9.2346 20 1 1.8132 4.9837 -7.2174 21 6 0.9795 4.3010 -3.5820 22 6 2.0470 -0.7330 1.2438 23 6 1.3762 -2.1054 1.3172 24 7 1.5044 -2.8044 0.0446 25 6 1.7817 -2.2044 -1.1135 26 8 1.8228 -2.8844 -2.1169 27 6 2.0454 -0.7315 -1.2418 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.0646 3.9367 -1.1267 32 1 1.3073 4.3659 -0.9414 33 1 -0.1237 2.3624 -2.1315 34 1 1.0847 1.1646 -2.7734 35 1 3.7102 3.6510 -3.6733 36 1 3.5413 2.0333 -2.9499 37 1 3.5425 1.9203 -5.4361 38 1 1.9870 1.3768 -4.7622 39 1 1.5794 2.8815 -6.6533 40 1 2.5982 4.1355 -5.9033 41 1 -2.1716 2.5583 -6.9410 42 1 1.5357 5.2373 -3.6274 43 1 0.0190 4.4687 -3.0948 44 1 3.1275 -0.8572 1.1723 45 1 1.8009 -0.1575 2.1362 46 1 0.3197 -1.9781 1.5536 47 1 1.8522 -2.6941 2.1012 48 1 1.3798 -3.7663 0.0399 49 1 1.5355 -0.3480 -2.1256 50 1 3.1179 -0.5643 -1.3415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981841750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:28 Heat of formation + Delta-G solvation = -13.668108 kcal Electronic energy + Delta-G solvation = -31287.744627 eV Core-core repulsion = 27316.531294 eV Total energy + Delta-G solvation = -3971.213333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.44252 -40.28811 -38.65421 -36.76233 -36.05691 -34.16470 -32.79058 -30.90933 -30.54718 -29.84351 -28.20065 -26.43639 -26.25760 -25.13985 -24.66385 -22.83555 -22.00110 -21.01306 -19.41080 -18.69545 -18.14953 -17.58356 -17.29172 -16.91508 -16.39002 -16.07145 -15.57887 -15.37766 -14.94204 -14.90081 -14.61647 -14.18397 -13.87598 -13.66981 -13.61910 -13.33365 -13.13684 -13.11883 -12.91374 -12.54379 -12.27969 -12.08793 -12.00648 -11.87356 -11.72736 -11.58932 -11.50386 -11.29406 -11.16282 -10.70227 -10.62130 -10.34240 -10.24424 -10.13020 -9.77776 -9.63328 -9.49551 -9.38089 -9.24490 -8.64778 -8.30559 -7.02079 -6.38622 -3.29146 2.40755 2.53658 2.77987 2.99664 3.50296 3.56857 3.70375 4.02073 4.15796 4.30184 4.42464 4.44942 4.63918 4.64481 4.77778 4.90194 4.95849 4.99198 5.08067 5.14602 5.23539 5.28504 5.37065 5.39375 5.45324 5.49675 5.52265 5.58415 5.63813 5.65547 5.71115 5.80863 5.84400 5.86533 5.94091 6.04914 6.19799 6.33372 6.35827 6.46931 6.48460 6.55557 6.60832 6.81612 6.96963 7.02454 7.71064 7.96855 8.01125 8.08578 8.42666 8.99351 9.61050 10.20643 11.01817 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.003540 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.019151 B = 7908.530224 C = 8629.603441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C 0.546 3.454 4 O -0.547 6.547 5 N -0.636 5.636 6 C 0.115 3.885 7 C -0.103 4.103 8 C 0.117 3.883 9 C -0.083 4.083 10 C -0.139 4.139 11 C 0.143 3.857 12 N -0.596 5.596 13 C -0.363 4.363 14 H 0.063 0.937 15 C 0.007 3.993 16 N -0.898 5.898 17 Si 1.015 2.985 18 H -0.299 1.299 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.161 3.839 22 C -0.112 4.112 23 C 0.109 3.891 24 N -0.722 5.722 25 C 0.526 3.474 26 O -0.551 6.551 27 C -0.128 4.128 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.267 0.733 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.400 0.600 49 H 0.112 0.888 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.060 -7.098 17.957 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C 0.334 3.666 4 O -0.426 6.426 5 N -0.370 5.370 6 C -0.008 4.008 7 C -0.105 4.105 8 C -0.005 4.005 9 C -0.121 4.121 10 C -0.178 4.178 11 C 0.017 3.983 12 N -0.320 5.320 13 C -0.490 4.490 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.534 5.534 17 Si 0.844 3.156 18 H -0.227 1.227 19 H -0.221 1.221 20 H -0.195 1.195 21 C 0.034 3.966 22 C -0.150 4.150 23 C -0.015 4.015 24 N -0.374 5.374 25 C 0.313 3.687 26 O -0.428 6.428 27 C -0.168 4.168 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.235 0.765 49 H 0.130 0.870 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.762 -6.559 16.542 19.414 hybrid contribution -0.465 -0.814 1.646 1.895 sum 7.298 -7.373 18.188 20.938 Atomic orbital electron populations 1.21998 0.91783 1.03257 1.03521 1.20829 0.97905 0.92577 0.96582 1.19910 0.80043 0.86438 0.80166 1.90681 1.39341 1.77392 1.35139 1.50147 1.51584 1.13186 1.22059 1.23247 1.01622 0.82901 0.92998 1.22603 0.97168 0.97267 0.93494 1.23406 0.96106 1.00072 0.80871 1.21113 0.94824 0.99996 0.96134 1.22023 0.99786 1.00229 0.95770 1.21250 0.88844 0.93703 0.94457 1.44303 1.04571 1.71159 1.11919 1.19984 0.83642 1.53007 0.92380 0.91887 1.26095 0.99968 0.99327 0.94402 1.70892 1.22141 1.22802 1.37593 0.84654 0.77202 0.77590 0.76113 1.22660 1.22125 1.19462 1.20831 0.96757 0.92317 0.86732 1.21756 1.01233 0.94172 0.97851 1.21466 1.01264 0.93574 0.85210 1.45479 1.72408 1.11761 1.07788 1.19961 0.75593 0.90395 0.82717 1.90798 1.51756 1.65020 1.35267 1.21848 1.04457 0.91206 0.99273 0.91155 0.91127 0.91464 0.90293 0.89671 0.89316 0.89906 0.91879 0.92960 0.92590 0.92057 0.91696 0.95298 0.92296 0.95623 0.92025 0.90255 0.88701 0.91062 0.90125 0.76501 0.86986 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.71 37.16 0.29 -1.10 16 2 C -0.08 -0.78 0.53 -155.45 -0.08 -0.86 16 3 C 0.55 7.20 6.70 -10.99 -0.07 7.13 16 4 O -0.55 -8.82 16.62 5.56 0.09 -8.73 16 5 N -0.64 -8.23 3.38 -180.43 -0.61 -8.84 16 6 C 0.11 1.46 7.97 -3.17 -0.03 1.43 16 7 C -0.10 -1.47 0.87 -154.41 -0.13 -1.60 16 8 C 0.12 1.59 5.53 -3.15 -0.02 1.57 16 9 C -0.08 -1.19 5.03 -26.82 -0.13 -1.32 16 10 C -0.14 -2.28 5.99 -26.81 -0.16 -2.45 16 11 C 0.14 2.89 4.27 -4.00 -0.02 2.87 16 12 N -0.60 -12.91 2.72 -172.75 -0.47 -13.38 16 13 C -0.36 -9.41 9.72 -15.06 -0.15 -9.56 16 14 H 0.06 1.75 8.06 -52.49 -0.42 1.33 16 15 C 0.01 0.18 4.84 -17.43 -0.08 0.10 16 16 N -0.90 -26.54 13.70 55.49 0.76 -25.78 16 17 Si 1.02 24.32 26.96 -169.99 -4.58 19.73 16 18 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.27 -5.86 4.73 56.52 0.27 -5.59 16 21 C 0.16 2.80 5.70 -3.81 -0.02 2.78 16 22 C -0.11 -0.94 4.35 -26.58 -0.12 -1.06 16 23 C 0.11 0.67 6.38 -4.48 -0.03 0.64 16 24 N -0.72 -6.11 5.24 -61.38 -0.32 -6.43 16 25 C 0.53 6.36 7.15 -11.87 -0.08 6.27 16 26 O -0.55 -9.05 17.78 5.56 0.10 -8.95 16 27 C -0.13 -1.45 4.51 -28.10 -0.13 -1.57 16 28 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 29 H 0.07 0.60 5.90 -51.93 -0.31 0.30 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.09 1.23 7.81 -51.93 -0.41 0.82 16 34 H 0.08 1.15 4.98 -51.93 -0.26 0.90 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.07 7.36 -51.93 -0.38 0.69 16 39 H 0.06 1.45 5.69 -51.93 -0.30 1.16 16 40 H 0.03 0.58 6.69 -51.92 -0.35 0.23 16 41 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.08 7.79 -51.93 -0.40 0.67 16 44 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 45 H 0.09 0.79 7.89 -51.93 -0.41 0.38 16 46 H 0.07 0.37 6.86 -51.93 -0.36 0.01 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.40 2.91 8.80 -40.82 -0.36 2.55 16 49 H 0.11 1.38 5.46 -51.93 -0.28 1.09 16 50 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -32.85 371.96 -8.45 -41.29 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.05 Total: 2.20 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.97 Total: 3.27 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.64 Total: -54.43 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.19 Total: -17.68 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.58 Total: 19.73 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.85 -8.45 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981841750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.627 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds