Wall clock time and date at job start Tue Mar 31 2020 19:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.66686 * 2 1 4 4 O 1.21279 * 119.99897 * 119.49894 * 3 2 1 5 5 N 1.34773 * 119.99883 * 299.49678 * 3 2 1 6 6 C 1.47681 * 134.45378 * 179.97438 * 5 3 2 7 7 C 1.53440 * 85.97193 * 155.71267 * 6 5 3 8 8 C 1.47672 * 134.45385 * 0.02562 * 5 3 2 9 9 C 1.52637 * 113.72867 * 268.85647 * 7 6 5 10 10 C 1.53189 * 109.33504 * 171.19837 * 9 7 6 11 11 C 1.52661 * 109.42575 * 58.93799 * 10 9 7 12 12 N 1.46895 * 109.35933 * 303.78274 * 11 10 9 13 13 C 1.36941 * 120.69102 * 235.30120 * 12 11 10 14 14 H 1.07999 * 119.99661 * 151.64486 * 13 12 11 15 15 C 1.38807 * 119.99838 * 331.63649 * 13 12 11 16 16 N 1.31624 * 119.99457 * 144.56047 * 15 13 12 17 17 Si 1.86800 * 120.00337 * 324.56411 * 15 13 12 18 18 H 1.48501 * 109.46989 * 269.99540 * 17 15 13 19 19 H 1.48504 * 109.47010 * 149.99505 * 17 15 13 20 20 H 1.48494 * 109.47068 * 29.99855 * 17 15 13 21 21 C 1.47121 * 118.61998 * 55.02664 * 12 11 10 22 22 C 1.53348 * 109.70133 * 120.51046 * 2 1 3 23 23 C 1.52935 * 108.66057 * 52.21460 * 22 2 1 24 24 N 1.45755 * 110.48068 * 50.77768 * 23 22 2 25 25 C 1.33345 * 124.10949 * 340.88631 * 24 23 22 26 26 O 1.21281 * 118.25207 * 182.26886 * 25 24 23 27 27 C 1.50180 * 123.50456 * 2.24662 * 25 24 23 28 28 H 1.09000 * 109.46940 * 60.00485 * 1 2 3 29 29 H 1.09005 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47738 * 299.99944 * 1 2 3 31 31 H 1.08996 * 113.78871 * 41.44982 * 6 5 3 32 32 H 1.08995 * 113.79429 * 269.98040 * 6 5 3 33 33 H 1.09002 * 113.79541 * 90.02586 * 8 5 3 34 34 H 1.08995 * 113.79746 * 318.54314 * 8 5 3 35 35 H 1.08996 * 109.49013 * 291.16181 * 9 7 6 36 36 H 1.08997 * 109.49022 * 51.21504 * 9 7 6 37 37 H 1.09006 * 109.48386 * 179.03070 * 10 9 7 38 38 H 1.08994 * 109.49058 * 299.07685 * 10 9 7 39 39 H 1.08996 * 109.44052 * 183.79373 * 11 10 9 40 40 H 1.09007 * 109.37024 * 63.72783 * 11 10 9 41 41 H 0.96993 * 120.00347 * 354.89172 * 16 15 13 42 42 H 1.09001 * 109.63790 * 68.55599 * 21 12 11 43 43 H 1.08998 * 109.64489 * 188.97664 * 21 12 11 44 44 H 1.08999 * 109.59918 * 171.97800 * 22 2 1 45 45 H 1.08996 * 109.60681 * 292.47029 * 22 2 1 46 46 H 1.09003 * 109.31707 * 290.45705 * 23 22 2 47 47 H 1.08994 * 109.12648 * 170.97542 * 23 22 2 48 48 H 0.97000 * 117.94306 * 160.91197 * 24 23 22 49 49 H 1.09004 * 109.40207 * 222.28519 * 27 25 24 50 50 H 1.09003 * 109.32983 * 102.50577 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.7283 1.8160 0.9142 5 7 1.7229 2.2470 -1.0159 6 6 2.0328 3.6549 -1.3365 7 6 1.7831 3.2637 -2.7991 8 6 0.9296 2.1102 -2.2539 9 6 3.0388 2.8036 -3.5348 10 6 2.6458 2.2338 -4.9014 11 6 1.9182 3.3061 -5.7084 12 7 0.7607 3.7893 -4.9439 13 6 -0.4967 3.7588 -5.4854 14 1 -1.3594 3.6647 -4.8425 15 6 -0.6625 3.8491 -6.8606 16 7 -1.6252 3.1748 -7.4530 17 14 0.4808 4.9273 -7.8705 18 1 -0.0839 6.2976 -7.9624 19 1 0.6220 4.3575 -9.2346 20 1 1.8132 4.9837 -7.2174 21 6 0.9795 4.3010 -3.5820 22 6 2.0470 -0.7330 1.2438 23 6 1.3762 -2.1054 1.3172 24 7 1.5044 -2.8044 0.0446 25 6 1.7817 -2.2044 -1.1135 26 8 1.8228 -2.8844 -2.1169 27 6 2.0454 -0.7315 -1.2418 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.0646 3.9367 -1.1267 32 1 1.3073 4.3659 -0.9414 33 1 -0.1237 2.3624 -2.1315 34 1 1.0847 1.1646 -2.7734 35 1 3.7102 3.6510 -3.6733 36 1 3.5413 2.0333 -2.9499 37 1 3.5425 1.9203 -5.4361 38 1 1.9870 1.3768 -4.7622 39 1 1.5794 2.8815 -6.6533 40 1 2.5982 4.1355 -5.9033 41 1 -2.1716 2.5583 -6.9410 42 1 1.5357 5.2373 -3.6274 43 1 0.0190 4.4687 -3.0948 44 1 3.1275 -0.8572 1.1723 45 1 1.8009 -0.1575 2.1362 46 1 0.3197 -1.9781 1.5536 47 1 1.8522 -2.6941 2.1012 48 1 1.3798 -3.7663 0.0399 49 1 1.5355 -0.3480 -2.1256 50 1 3.1179 -0.5643 -1.3415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981841750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:27 Heat of formation + Delta-G solvation = -36.832822 kcal Electronic energy + Delta-G solvation = -31288.749125 eV Core-core repulsion = 27316.531294 eV Total energy + Delta-G solvation = -3972.217831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.42847 -41.32960 -39.78799 -37.81855 -37.46507 -35.03228 -34.53618 -32.57821 -31.76757 -30.74342 -29.01928 -27.65218 -27.33520 -26.86339 -25.45005 -23.79833 -23.56298 -22.52822 -20.49327 -19.55323 -19.43461 -19.11528 -18.50176 -17.85751 -17.29327 -17.10168 -16.63162 -16.54096 -16.32725 -15.88286 -15.74531 -15.57506 -15.44860 -15.02801 -14.67855 -14.58452 -14.29466 -14.23462 -13.88309 -13.75141 -13.49779 -13.37921 -13.25307 -12.95479 -12.92759 -12.70798 -12.53248 -12.41915 -12.08708 -12.07589 -12.00443 -11.70913 -11.63427 -11.40822 -11.33023 -11.14605 -11.05395 -10.58128 -10.32852 -10.12564 -9.74196 -8.91860 -8.49156 -5.35537 1.43885 1.52106 1.57421 1.61105 1.75120 1.79487 2.24383 2.66068 2.99475 3.09446 3.30164 3.35606 3.53151 3.63083 3.64525 3.78544 3.81113 3.98509 4.07737 4.22171 4.26127 4.29644 4.33768 4.38362 4.46529 4.53351 4.57076 4.63331 4.64145 4.68272 4.75108 4.76240 4.85299 4.89261 4.92552 4.98254 5.03603 5.07193 5.09999 5.18346 5.20545 5.23668 5.36846 5.53357 5.78461 5.92500 6.21537 6.34943 6.63992 6.98011 7.02999 7.11366 7.70844 8.21943 8.87983 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.003540 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.019151 B = 7908.530224 C = 8629.603441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C 0.545 3.455 4 O -0.574 6.574 5 N -0.633 5.633 6 C 0.121 3.879 7 C -0.100 4.100 8 C 0.122 3.878 9 C -0.077 4.077 10 C -0.131 4.131 11 C 0.138 3.862 12 N -0.609 5.609 13 C -0.339 4.339 14 H 0.034 0.966 15 C -0.048 4.048 16 N -0.941 5.941 17 Si 1.057 2.943 18 H -0.300 1.300 19 H -0.306 1.306 20 H -0.233 1.233 21 C 0.160 3.840 22 C -0.110 4.110 23 C 0.109 3.891 24 N -0.707 5.707 25 C 0.526 3.474 26 O -0.603 6.603 27 C -0.124 4.124 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.252 0.748 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.408 0.592 49 H 0.098 0.902 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.000 -6.971 20.499 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C 0.335 3.665 4 O -0.454 6.454 5 N -0.366 5.366 6 C -0.001 4.001 7 C -0.102 4.102 8 C 0.000 4.000 9 C -0.114 4.114 10 C -0.170 4.170 11 C 0.013 3.987 12 N -0.334 5.334 13 C -0.468 4.468 14 H 0.052 0.948 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.884 3.116 18 H -0.228 1.228 19 H -0.233 1.233 20 H -0.157 1.157 21 C 0.034 3.966 22 C -0.148 4.148 23 C -0.014 4.014 24 N -0.358 5.358 25 C 0.313 3.687 26 O -0.485 6.485 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.131 0.869 48 H 0.245 0.755 49 H 0.117 0.883 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.731 -6.423 19.170 22.438 hybrid contribution -1.094 -0.859 0.999 1.713 sum 8.638 -7.283 20.170 23.118 Atomic orbital electron populations 1.21987 0.90973 1.03903 1.03379 1.20831 0.98419 0.90872 0.97115 1.20338 0.79361 0.87264 0.79490 1.90671 1.40576 1.78112 1.36071 1.50118 1.51215 1.13452 1.21824 1.23252 1.02608 0.83023 0.91261 1.22477 0.96973 0.96593 0.94163 1.23289 0.95871 0.99676 0.81179 1.21076 0.94849 1.00752 0.94721 1.21898 0.99883 0.98390 0.96828 1.21297 0.88535 0.94955 0.93908 1.44373 1.03488 1.71996 1.13496 1.19866 0.84886 1.50140 0.91917 0.94836 1.27051 1.01007 1.00359 0.96157 1.71002 1.24350 1.24994 1.37802 0.84108 0.77423 0.75551 0.74566 1.22837 1.23318 1.15728 1.20945 0.97353 0.93696 0.84570 1.21773 1.01021 0.95186 0.96826 1.21703 1.02615 0.92555 0.84483 1.45449 1.70334 1.12376 1.07633 1.20027 0.75294 0.90366 0.82984 1.90776 1.54512 1.65974 1.37248 1.21751 1.04247 0.91072 0.99285 0.92549 0.90083 0.90369 0.89333 0.88454 0.89847 0.90412 0.90416 0.91771 0.90394 0.93633 0.94403 0.94095 0.93856 0.94145 0.92619 0.90886 0.88131 0.89150 0.86909 0.75527 0.88350 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 7.71 71.98 0.55 -1.90 16 2 C -0.07 -1.30 0.53 -52.79 -0.03 -1.33 16 3 C 0.55 13.39 6.70 87.66 0.59 13.97 16 4 O -0.57 -17.32 16.62 -3.03 -0.05 -17.37 16 5 N -0.63 -15.24 3.38 -843.16 -2.85 -18.09 16 6 C 0.12 2.75 7.97 86.30 0.69 3.44 16 7 C -0.10 -2.65 0.87 -52.02 -0.05 -2.70 16 8 C 0.12 3.20 5.53 86.32 0.48 3.68 16 9 C -0.08 -1.97 5.03 30.54 0.15 -1.82 16 10 C -0.13 -4.07 5.99 30.54 0.18 -3.89 16 11 C 0.14 5.36 4.27 86.19 0.37 5.73 16 12 N -0.61 -25.96 2.72 -700.45 -1.90 -27.87 16 13 C -0.34 -17.93 9.72 84.03 0.82 -17.11 16 14 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 15 C -0.05 -2.69 4.84 84.86 0.41 -2.28 16 16 N -0.94 -57.95 13.70 21.65 0.30 -57.65 16 17 Si 1.06 49.64 26.96 68.60 1.85 51.49 16 18 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 19 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 20 H -0.23 -9.47 4.73 99.48 0.47 -8.99 16 21 C 0.16 5.32 5.70 86.19 0.49 5.81 16 22 C -0.11 -1.55 4.35 30.69 0.13 -1.42 16 23 C 0.11 0.96 6.38 86.50 0.55 1.51 16 24 N -0.71 -10.40 5.24 -467.30 -2.45 -12.85 16 25 C 0.53 12.27 7.15 87.72 0.63 12.89 16 26 O -0.60 -19.99 17.78 -3.03 -0.05 -20.05 16 27 C -0.12 -2.69 4.51 29.70 0.13 -2.56 16 28 H 0.06 1.12 6.20 -2.39 -0.01 1.11 16 29 H 0.08 1.20 5.90 -2.38 -0.01 1.19 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 32 H 0.10 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.08 2.29 7.81 -2.39 -0.02 2.27 16 34 H 0.08 2.16 4.98 -2.39 -0.01 2.14 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.55 8.02 -2.39 -0.02 1.53 16 37 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.04 1.56 7.36 -2.39 -0.02 1.54 16 39 H 0.04 1.67 5.69 -2.39 -0.01 1.66 16 40 H 0.04 1.51 6.69 -2.38 -0.02 1.49 16 41 H 0.25 15.64 8.73 -92.71 -0.81 14.83 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.90 7.79 -2.39 -0.02 1.88 16 44 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 45 H 0.10 1.37 7.89 -2.39 -0.02 1.35 16 46 H 0.09 0.56 6.86 -2.39 -0.02 0.54 16 47 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.41 5.04 8.80 -92.71 -0.82 4.22 16 49 H 0.10 2.42 5.46 -2.38 -0.01 2.41 16 50 H 0.10 2.23 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -73.66 371.96 0.81 -72.85 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.13 Total: 17.50 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.10 Total: 12.04 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -6.90 Total: -116.46 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.10 Total: -37.42 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.85 Total: 51.49 kcal Total: -73.66 0.81 -72.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981841750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.015 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds