Wall clock time and date at job start Tue Mar 31 2020 19:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.60191 * 2 1 4 4 O 1.21276 * 119.99967 * 126.78890 * 3 2 1 5 5 N 1.34781 * 119.99825 * 306.50965 * 3 2 1 6 6 C 1.47182 * 135.99178 * 175.09785 * 5 3 2 7 7 C 1.53181 * 87.73216 * 153.42487 * 6 5 3 8 8 C 1.47163 * 135.99456 * 355.47160 * 5 3 2 9 9 C 1.52508 * 114.08876 * 139.66231 * 7 6 5 10 10 C 1.53203 * 109.35944 * 190.15005 * 9 7 6 11 11 C 1.53143 * 109.35391 * 301.10168 * 10 9 7 12 12 N 1.46899 * 109.10726 * 56.51533 * 11 10 9 13 13 C 1.36937 * 120.69838 * 124.61944 * 12 11 10 14 14 H 1.07993 * 120.00221 * 329.93104 * 13 12 11 15 15 C 1.38813 * 119.99863 * 149.92673 * 13 12 11 16 16 N 1.31623 * 120.00001 * 164.22721 * 15 13 12 17 17 Si 1.86800 * 120.00046 * 344.23141 * 15 13 12 18 18 H 1.48499 * 109.47377 * 90.13292 * 17 15 13 19 19 H 1.48508 * 109.47019 * 210.13551 * 17 15 13 20 20 H 1.48497 * 109.47340 * 330.13345 * 17 15 13 21 21 C 1.47138 * 118.59990 * 304.59549 * 12 11 10 22 22 C 1.53342 * 109.60121 * 120.32545 * 2 1 3 23 23 C 1.53067 * 108.42741 * 52.38950 * 22 2 1 24 24 C 1.50167 * 109.89548 * 48.89922 * 23 22 2 25 25 O 1.21278 * 118.25332 * 162.44159 * 24 23 22 26 26 N 1.33361 * 123.50399 * 342.41896 * 24 23 22 27 27 C 1.45753 * 124.11026 * 2.22186 * 26 24 23 28 28 H 1.09002 * 109.47427 * 63.96177 * 1 2 3 29 29 H 1.09005 * 109.47497 * 183.96324 * 1 2 3 30 30 H 1.09002 * 109.47431 * 303.96289 * 1 2 3 31 31 H 1.08995 * 113.49110 * 268.11795 * 6 5 3 32 32 H 1.09002 * 113.48538 * 38.62739 * 6 5 3 33 33 H 1.08997 * 113.49522 * 321.36608 * 8 5 3 34 34 H 1.08994 * 113.49302 * 91.82132 * 8 5 3 35 35 H 1.08995 * 109.49336 * 310.11409 * 9 7 6 36 36 H 1.08994 * 109.49079 * 70.18654 * 9 7 6 37 37 H 1.09006 * 109.49374 * 181.13805 * 10 9 7 38 38 H 1.09001 * 109.51402 * 61.07482 * 10 9 7 39 39 H 1.09001 * 109.53404 * 296.62440 * 11 10 9 40 40 H 1.09002 * 109.53441 * 176.40643 * 11 10 9 41 41 H 0.96997 * 119.99780 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.64310 * 291.54440 * 21 12 11 43 43 H 1.09002 * 109.63807 * 170.92798 * 21 12 11 44 44 H 1.08999 * 109.67415 * 172.12422 * 22 2 1 45 45 H 1.09007 * 109.67407 * 292.65355 * 22 2 1 46 46 H 1.09000 * 109.40583 * 169.02976 * 23 22 2 47 47 H 1.09006 * 109.40280 * 288.85373 * 23 22 2 48 48 H 0.97005 * 117.94227 * 182.21890 * 26 24 23 49 49 H 1.09001 * 109.30274 * 220.61183 * 27 26 24 50 50 H 1.09002 * 109.30067 * 101.23127 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4196 0.0000 4 8 2.8315 1.7799 0.8411 5 7 1.6074 2.2874 -0.9382 6 6 1.7865 3.7221 -1.2137 7 6 1.5308 3.4082 -2.6910 8 6 0.7506 2.2174 -2.1326 9 6 0.6666 4.4413 -3.4064 10 6 0.2700 3.9044 -4.7853 11 6 1.5341 3.6083 -5.5975 12 7 2.3777 2.6677 -4.8482 13 6 2.7811 1.4875 -5.4134 14 1 2.1576 0.9996 -6.1479 15 6 3.9916 0.9183 -5.0424 16 7 4.2435 -0.3405 -5.3330 17 14 5.2632 1.9388 -4.1307 18 1 5.0426 1.8128 -2.6676 19 1 6.6245 1.4517 -4.4699 20 1 5.1334 3.3632 -4.5299 21 6 2.7805 3.0207 -3.4777 22 6 2.0444 -0.7294 1.2469 23 6 1.3718 -2.1026 1.3161 24 6 1.4772 -2.7909 -0.0143 25 8 1.2952 -3.9892 -0.0568 26 7 1.7598 -2.1548 -1.1519 27 6 2.0464 -0.7286 -1.2414 28 1 -0.3634 0.4511 -0.9234 29 1 -0.3634 -1.0252 0.0710 30 1 -0.3634 0.5741 0.8523 31 1 1.0178 4.3502 -0.7636 32 1 2.7961 4.0804 -1.0123 33 1 0.8831 1.3021 -2.7094 34 1 -0.2969 2.4398 -1.9295 35 1 -0.2313 4.6338 -2.8191 36 1 1.2295 5.3671 -3.5247 37 1 -0.3310 4.6495 -5.3067 38 1 -0.3089 2.9884 -4.6667 39 1 2.0832 4.5344 -5.7676 40 1 1.2572 3.1666 -6.5547 41 1 5.0892 -0.7383 -5.0734 42 1 3.4722 3.8627 -3.5045 43 1 3.2601 2.1637 -3.0047 44 1 3.1253 -0.8531 1.1799 45 1 1.7951 -0.1533 2.1381 46 1 1.8634 -2.7087 2.0772 47 1 0.3205 -1.9782 1.5758 48 1 1.7757 -2.6740 -1.9711 49 1 1.5617 -0.3186 -2.1275 50 1 3.1234 -0.5819 -1.3232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981955294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:43 Heat of formation + Delta-G solvation = -10.967092 kcal Electronic energy + Delta-G solvation = -32031.247057 eV Core-core repulsion = 28060.150849 eV Total energy + Delta-G solvation = -3971.096208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.32209 -40.25566 -38.59592 -36.53262 -36.11795 -33.35727 -33.09786 -31.46127 -30.88362 -29.87496 -27.12978 -26.38974 -26.00876 -25.50875 -24.67630 -22.87107 -22.33644 -20.79687 -19.76221 -18.60046 -18.09731 -17.31588 -16.92039 -16.65287 -16.03844 -15.97277 -15.42648 -15.27624 -15.03825 -14.55424 -14.46852 -14.29418 -13.86905 -13.80699 -13.54139 -13.35179 -13.13617 -12.79634 -12.67913 -12.52760 -12.32756 -12.14524 -12.03899 -11.97195 -11.63749 -11.57626 -11.52803 -11.14086 -11.02034 -10.85268 -10.58401 -10.49054 -10.21171 -10.03852 -9.78285 -9.71385 -9.61400 -9.48606 -8.98475 -8.74952 -8.58085 -7.06165 -6.05878 -3.47139 2.61081 2.69139 2.84489 3.24497 3.38347 3.40166 3.42241 4.20106 4.37008 4.37073 4.43144 4.54418 4.60657 4.82435 4.87862 4.98358 5.04059 5.13879 5.20245 5.29235 5.33616 5.39232 5.43253 5.43378 5.48964 5.54929 5.62794 5.65892 5.69894 5.72025 5.81262 5.83930 5.90497 5.93822 6.03508 6.10304 6.13619 6.19564 6.21605 6.35840 6.41627 6.54728 6.60452 6.80240 6.83350 7.39573 7.81344 7.86181 8.19184 8.22384 8.26083 8.81734 9.59605 9.98290 11.09244 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.005245 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.064090 B = 5337.408530 C = 6309.266159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C 0.559 3.441 4 O -0.540 6.540 5 N -0.638 5.638 6 C 0.108 3.892 7 C -0.104 4.104 8 C 0.109 3.891 9 C -0.092 4.092 10 C -0.134 4.134 11 C 0.146 3.854 12 N -0.603 5.603 13 C -0.261 4.261 14 H 0.087 0.913 15 C 0.029 3.971 16 N -0.906 5.906 17 Si 0.877 3.123 18 H -0.287 1.287 19 H -0.303 1.303 20 H -0.270 1.270 21 C 0.150 3.850 22 C -0.099 4.099 23 C -0.135 4.135 24 C 0.518 3.482 25 O -0.564 6.564 26 N -0.708 5.708 27 C 0.122 3.878 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.063 0.937 41 H 0.263 0.737 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.407 0.593 49 H 0.095 0.905 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 6.443 9.131 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C 0.347 3.653 4 O -0.417 6.417 5 N -0.372 5.372 6 C -0.015 4.015 7 C -0.107 4.107 8 C -0.013 4.013 9 C -0.130 4.130 10 C -0.174 4.174 11 C 0.020 3.980 12 N -0.326 5.326 13 C -0.389 4.389 14 H 0.105 0.895 15 C -0.170 4.170 16 N -0.549 5.549 17 Si 0.708 3.292 18 H -0.215 1.215 19 H -0.231 1.231 20 H -0.195 1.195 21 C 0.024 3.976 22 C -0.137 4.137 23 C -0.175 4.175 24 C 0.305 3.695 25 O -0.444 6.444 26 N -0.359 5.359 27 C -0.003 4.003 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.244 0.756 49 H 0.113 0.887 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.796 5.830 9.902 15.099 hybrid contribution 0.884 0.497 0.183 1.030 sum -8.912 6.326 10.085 14.871 Atomic orbital electron populations 1.21971 0.91916 1.03130 1.03143 1.21037 0.97985 0.92532 0.97698 1.19648 0.80595 0.85862 0.79167 1.90689 1.33994 1.78925 1.38081 1.49542 1.49819 1.10592 1.27252 1.23121 1.02252 0.82383 0.93728 1.22463 0.99150 0.95822 0.93270 1.23159 0.94181 1.00780 0.83176 1.21227 0.98006 0.97245 0.96551 1.22012 0.99272 1.00401 0.95669 1.20935 0.90023 0.92642 0.94365 1.44344 1.59395 1.19993 1.08916 1.18887 1.01182 0.95885 1.22927 0.89543 1.25313 0.96898 0.96045 0.98777 1.69767 1.24801 1.11045 1.49282 0.87092 0.81729 0.81398 0.79021 1.21463 1.23113 1.19507 1.21079 0.91911 0.99001 0.85561 1.21532 1.01290 0.94050 0.96836 1.21720 1.03843 0.96765 0.95142 1.20139 0.75775 0.87290 0.86302 1.90748 1.51383 1.15124 1.87142 1.45388 1.70406 1.09842 1.10311 1.21415 1.01721 0.79983 0.97197 0.91231 0.91228 0.91717 0.89856 0.90604 0.89009 0.90124 0.92436 0.91767 0.92482 0.91895 0.95934 0.91806 0.92678 0.95110 0.90556 0.90231 0.89708 0.87879 0.88005 0.75632 0.88714 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.73 37.16 0.29 -1.23 16 2 C -0.09 -1.16 0.55 -155.52 -0.09 -1.25 16 3 C 0.56 8.83 6.72 -10.98 -0.07 8.76 16 4 O -0.54 -10.23 16.75 5.56 0.09 -10.14 16 5 N -0.64 -9.32 3.38 -184.94 -0.62 -9.95 16 6 C 0.11 1.45 7.80 -8.03 -0.06 1.39 16 7 C -0.10 -1.50 0.96 -154.87 -0.15 -1.64 16 8 C 0.11 1.45 5.18 -8.17 -0.04 1.40 16 9 C -0.09 -1.10 5.11 -26.88 -0.14 -1.24 16 10 C -0.13 -1.75 6.03 -26.55 -0.16 -1.91 16 11 C 0.15 2.48 6.45 -3.75 -0.02 2.45 16 12 N -0.60 -12.54 2.76 -172.51 -0.48 -13.01 16 13 C -0.26 -6.54 10.05 -15.06 -0.15 -6.69 16 14 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 15 C 0.03 0.78 5.30 -17.43 -0.09 0.69 16 16 N -0.91 -25.82 13.97 55.49 0.78 -25.05 16 17 Si 0.88 21.56 24.25 -169.99 -4.12 17.44 16 18 H -0.29 -7.01 6.58 56.52 0.37 -6.64 16 19 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 20 H -0.27 -6.52 6.46 56.52 0.37 -6.15 16 21 C 0.15 2.90 3.34 -3.86 -0.01 2.89 16 22 C -0.10 -1.20 4.29 -26.52 -0.11 -1.32 16 23 C -0.14 -1.51 5.39 -28.11 -0.15 -1.66 16 24 C 0.52 7.57 6.94 -11.87 -0.08 7.49 16 25 O -0.56 -10.29 17.78 5.56 0.10 -10.19 16 26 N -0.71 -10.12 5.35 -61.39 -0.33 -10.44 16 27 C 0.12 1.78 5.72 -4.48 -0.03 1.76 16 28 H 0.07 0.71 6.05 -51.93 -0.31 0.40 16 29 H 0.07 0.70 5.64 -51.93 -0.29 0.41 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.09 1.39 6.15 -51.93 -0.32 1.07 16 34 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.03 0.62 6.75 -51.93 -0.35 0.27 16 43 H 0.08 1.68 4.50 -51.93 -0.23 1.45 16 44 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 45 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 46 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.10 0.95 6.86 -51.93 -0.36 0.60 16 48 H 0.41 5.90 8.80 -40.82 -0.36 5.54 16 49 H 0.09 1.44 5.97 -51.93 -0.31 1.13 16 50 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -31.98 372.18 -8.09 -40.06 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.03 Total: 5.79 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -1.08 Total: 9.89 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.65 Total: -58.45 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.19 Total: -20.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.12 Total: 17.44 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.98 -8.09 -40.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981955294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.096 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds