Wall clock time and date at job start Tue Mar 31 2020 19:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.60191 * 2 1 4 4 O 1.21276 * 119.99967 * 126.78890 * 3 2 1 5 5 N 1.34781 * 119.99825 * 306.50965 * 3 2 1 6 6 C 1.47182 * 135.99178 * 175.09785 * 5 3 2 7 7 C 1.53181 * 87.73216 * 153.42487 * 6 5 3 8 8 C 1.47163 * 135.99456 * 355.47160 * 5 3 2 9 9 C 1.52508 * 114.08876 * 139.66231 * 7 6 5 10 10 C 1.53203 * 109.35944 * 190.15005 * 9 7 6 11 11 C 1.53143 * 109.35391 * 301.10168 * 10 9 7 12 12 N 1.46899 * 109.10726 * 56.51533 * 11 10 9 13 13 C 1.36937 * 120.69838 * 124.61944 * 12 11 10 14 14 H 1.07993 * 120.00221 * 329.93104 * 13 12 11 15 15 C 1.38813 * 119.99863 * 149.92673 * 13 12 11 16 16 N 1.31623 * 120.00001 * 164.22721 * 15 13 12 17 17 Si 1.86800 * 120.00046 * 344.23141 * 15 13 12 18 18 H 1.48499 * 109.47377 * 90.13292 * 17 15 13 19 19 H 1.48508 * 109.47019 * 210.13551 * 17 15 13 20 20 H 1.48497 * 109.47340 * 330.13345 * 17 15 13 21 21 C 1.47138 * 118.59990 * 304.59549 * 12 11 10 22 22 C 1.53342 * 109.60121 * 120.32545 * 2 1 3 23 23 C 1.53067 * 108.42741 * 52.38950 * 22 2 1 24 24 C 1.50167 * 109.89548 * 48.89922 * 23 22 2 25 25 O 1.21278 * 118.25332 * 162.44159 * 24 23 22 26 26 N 1.33361 * 123.50399 * 342.41896 * 24 23 22 27 27 C 1.45753 * 124.11026 * 2.22186 * 26 24 23 28 28 H 1.09002 * 109.47427 * 63.96177 * 1 2 3 29 29 H 1.09005 * 109.47497 * 183.96324 * 1 2 3 30 30 H 1.09002 * 109.47431 * 303.96289 * 1 2 3 31 31 H 1.08995 * 113.49110 * 268.11795 * 6 5 3 32 32 H 1.09002 * 113.48538 * 38.62739 * 6 5 3 33 33 H 1.08997 * 113.49522 * 321.36608 * 8 5 3 34 34 H 1.08994 * 113.49302 * 91.82132 * 8 5 3 35 35 H 1.08995 * 109.49336 * 310.11409 * 9 7 6 36 36 H 1.08994 * 109.49079 * 70.18654 * 9 7 6 37 37 H 1.09006 * 109.49374 * 181.13805 * 10 9 7 38 38 H 1.09001 * 109.51402 * 61.07482 * 10 9 7 39 39 H 1.09001 * 109.53404 * 296.62440 * 11 10 9 40 40 H 1.09002 * 109.53441 * 176.40643 * 11 10 9 41 41 H 0.96997 * 119.99780 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.64310 * 291.54440 * 21 12 11 43 43 H 1.09002 * 109.63807 * 170.92798 * 21 12 11 44 44 H 1.08999 * 109.67415 * 172.12422 * 22 2 1 45 45 H 1.09007 * 109.67407 * 292.65355 * 22 2 1 46 46 H 1.09000 * 109.40583 * 169.02976 * 23 22 2 47 47 H 1.09006 * 109.40280 * 288.85373 * 23 22 2 48 48 H 0.97005 * 117.94227 * 182.21890 * 26 24 23 49 49 H 1.09001 * 109.30274 * 220.61183 * 27 26 24 50 50 H 1.09002 * 109.30067 * 101.23127 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4196 0.0000 4 8 2.8315 1.7799 0.8411 5 7 1.6074 2.2874 -0.9382 6 6 1.7865 3.7221 -1.2137 7 6 1.5308 3.4082 -2.6910 8 6 0.7506 2.2174 -2.1326 9 6 0.6666 4.4413 -3.4064 10 6 0.2700 3.9044 -4.7853 11 6 1.5341 3.6083 -5.5975 12 7 2.3777 2.6677 -4.8482 13 6 2.7811 1.4875 -5.4134 14 1 2.1576 0.9996 -6.1479 15 6 3.9916 0.9183 -5.0424 16 7 4.2435 -0.3405 -5.3330 17 14 5.2632 1.9388 -4.1307 18 1 5.0426 1.8128 -2.6676 19 1 6.6245 1.4517 -4.4699 20 1 5.1334 3.3632 -4.5299 21 6 2.7805 3.0207 -3.4777 22 6 2.0444 -0.7294 1.2469 23 6 1.3718 -2.1026 1.3161 24 6 1.4772 -2.7909 -0.0143 25 8 1.2952 -3.9892 -0.0568 26 7 1.7598 -2.1548 -1.1519 27 6 2.0464 -0.7286 -1.2414 28 1 -0.3634 0.4511 -0.9234 29 1 -0.3634 -1.0252 0.0710 30 1 -0.3634 0.5741 0.8523 31 1 1.0178 4.3502 -0.7636 32 1 2.7961 4.0804 -1.0123 33 1 0.8831 1.3021 -2.7094 34 1 -0.2969 2.4398 -1.9295 35 1 -0.2313 4.6338 -2.8191 36 1 1.2295 5.3671 -3.5247 37 1 -0.3310 4.6495 -5.3067 38 1 -0.3089 2.9884 -4.6667 39 1 2.0832 4.5344 -5.7676 40 1 1.2572 3.1666 -6.5547 41 1 5.0892 -0.7383 -5.0734 42 1 3.4722 3.8627 -3.5045 43 1 3.2601 2.1637 -3.0047 44 1 3.1253 -0.8531 1.1799 45 1 1.7951 -0.1533 2.1381 46 1 1.8634 -2.7087 2.0772 47 1 0.3205 -1.9782 1.5758 48 1 1.7757 -2.6740 -1.9711 49 1 1.5617 -0.3186 -2.1275 50 1 3.1234 -0.5819 -1.3232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981955294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:42 Heat of formation + Delta-G solvation = -34.426422 kcal Electronic energy + Delta-G solvation = -32032.264330 eV Core-core repulsion = 28060.150849 eV Total energy + Delta-G solvation = -3972.113481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.47324 -41.43331 -39.86080 -37.80774 -37.52071 -34.72804 -34.48953 -32.80773 -32.37002 -31.08143 -28.12711 -27.72811 -27.13509 -27.06464 -25.75858 -24.26629 -23.57906 -22.13967 -20.93202 -19.94701 -19.19030 -18.70268 -18.40056 -17.89377 -17.29543 -17.14783 -16.97151 -16.53411 -16.23486 -15.89468 -15.66329 -15.61400 -15.34218 -15.12713 -14.73037 -14.62424 -14.41050 -14.29504 -13.85547 -13.71071 -13.55352 -13.40780 -13.26319 -13.13603 -13.00569 -12.78192 -12.64071 -12.56270 -12.22318 -12.15282 -11.94950 -11.89650 -11.67306 -11.55314 -11.33220 -11.00749 -10.91031 -10.76128 -10.65134 -10.25702 -9.73423 -8.85303 -8.17335 -5.50089 1.21527 1.32605 1.37456 1.41034 1.50743 1.74471 2.21184 2.34927 2.98708 3.17064 3.26717 3.32174 3.49139 3.50523 3.54740 3.80340 3.85653 4.03325 4.06697 4.19538 4.23830 4.28524 4.38554 4.40264 4.50057 4.56590 4.59780 4.61111 4.63121 4.72211 4.78318 4.79899 4.81614 4.86912 4.92576 4.94923 5.01244 5.06156 5.19740 5.21225 5.22090 5.34964 5.41744 5.60367 5.66224 5.90117 6.15441 6.21976 6.66381 6.93712 6.99776 7.05714 7.63698 8.06089 9.01504 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.005245 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.064090 B = 5337.408530 C = 6309.266159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C 0.552 3.448 4 O -0.579 6.579 5 N -0.644 5.644 6 C 0.111 3.889 7 C -0.104 4.104 8 C 0.117 3.883 9 C -0.085 4.085 10 C -0.124 4.124 11 C 0.137 3.863 12 N -0.615 5.615 13 C -0.228 4.228 14 H 0.062 0.938 15 C -0.020 4.020 16 N -0.949 5.949 17 Si 0.927 3.073 18 H -0.294 1.294 19 H -0.320 1.320 20 H -0.261 1.261 21 C 0.148 3.852 22 C -0.095 4.095 23 C -0.124 4.124 24 C 0.516 3.484 25 O -0.602 6.602 26 N -0.706 5.706 27 C 0.131 3.869 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.053 0.947 41 H 0.257 0.743 42 H 0.021 0.979 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.117 0.883 47 H 0.132 0.868 48 H 0.402 0.598 49 H 0.087 0.913 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 9.145 10.722 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C 0.341 3.659 4 O -0.459 6.459 5 N -0.377 5.377 6 C -0.011 4.011 7 C -0.107 4.107 8 C -0.005 4.005 9 C -0.123 4.123 10 C -0.163 4.163 11 C 0.013 3.987 12 N -0.339 5.339 13 C -0.358 4.358 14 H 0.080 0.920 15 C -0.215 4.215 16 N -0.596 5.596 17 Si 0.759 3.241 18 H -0.222 1.222 19 H -0.250 1.250 20 H -0.186 1.186 21 C 0.023 3.977 22 C -0.133 4.133 23 C -0.163 4.163 24 C 0.305 3.695 25 O -0.484 6.484 26 N -0.356 5.356 27 C 0.006 3.994 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.135 0.865 47 H 0.150 0.850 48 H 0.238 0.762 49 H 0.106 0.894 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.269 8.618 11.474 19.545 hybrid contribution 1.944 -0.282 -0.440 2.013 sum -11.325 8.336 11.034 17.875 Atomic orbital electron populations 1.21966 0.89176 1.04040 1.04309 1.21038 1.00048 0.90785 0.96829 1.20054 0.80114 0.86777 0.78906 1.90664 1.35649 1.79752 1.39867 1.49690 1.49674 1.11295 1.27009 1.23303 1.02808 0.82204 0.92810 1.22240 0.97338 0.97507 0.93568 1.23288 0.96042 0.99154 0.81997 1.21260 0.99087 0.96114 0.95802 1.21903 0.96942 1.01414 0.96032 1.21184 0.91413 0.91617 0.94529 1.44475 1.59796 1.19473 1.10165 1.18823 0.99711 0.96596 1.20682 0.92041 1.25709 0.98563 0.96625 1.00611 1.69871 1.24989 1.12474 1.52231 0.86292 0.79381 0.80621 0.77804 1.22186 1.24963 1.18572 1.20935 0.94351 0.97150 0.85233 1.21499 1.00099 0.94678 0.96998 1.21748 1.05755 0.95715 0.93048 1.20786 0.74554 0.86895 0.87219 1.90732 1.53236 1.16797 1.87684 1.45423 1.69976 1.09667 1.10496 1.21224 0.99571 0.80344 0.98253 0.90762 0.90559 0.89695 0.85442 0.92456 0.91484 0.85594 0.88188 0.91014 0.89230 0.92121 0.95301 0.92829 0.93422 0.96097 0.93997 0.92394 0.88164 0.86466 0.84990 0.76188 0.89445 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.73 71.98 0.56 -1.91 16 2 C -0.08 -2.10 0.55 -52.84 -0.03 -2.13 16 3 C 0.55 16.95 6.72 87.66 0.59 17.54 16 4 O -0.58 -21.84 16.75 -3.02 -0.05 -21.90 16 5 N -0.64 -17.47 3.38 -857.40 -2.90 -20.37 16 6 C 0.11 2.61 7.80 83.43 0.65 3.26 16 7 C -0.10 -2.66 0.96 -52.42 -0.05 -2.71 16 8 C 0.12 2.72 5.18 83.34 0.43 3.15 16 9 C -0.08 -1.56 5.11 30.50 0.16 -1.40 16 10 C -0.12 -2.68 6.03 30.71 0.19 -2.49 16 11 C 0.14 4.37 6.45 86.35 0.56 4.92 16 12 N -0.61 -25.30 2.76 -699.70 -1.93 -27.24 16 13 C -0.23 -11.74 10.05 84.03 0.84 -10.90 16 14 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 15 C -0.02 -1.10 5.30 84.86 0.45 -0.65 16 16 N -0.95 -56.92 13.97 21.65 0.30 -56.62 16 17 Si 0.93 46.80 24.25 68.60 1.66 48.46 16 18 H -0.29 -14.92 6.58 99.48 0.65 -14.26 16 19 H -0.32 -16.87 7.11 99.48 0.71 -16.16 16 20 H -0.26 -12.56 6.46 99.48 0.64 -11.92 16 21 C 0.15 5.64 3.34 86.15 0.29 5.92 16 22 C -0.09 -2.20 4.29 30.73 0.13 -2.06 16 23 C -0.12 -2.53 5.39 29.70 0.16 -2.37 16 24 C 0.52 14.94 6.94 87.71 0.61 15.55 16 25 O -0.60 -21.98 17.78 -3.02 -0.05 -22.04 16 26 N -0.71 -20.80 5.35 -467.31 -2.50 -23.30 16 27 C 0.13 3.99 5.72 86.49 0.49 4.49 16 28 H 0.07 1.27 6.05 -2.39 -0.01 1.25 16 29 H 0.08 1.29 5.64 -2.38 -0.01 1.27 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.13 1.97 8.10 -2.39 -0.02 1.95 16 32 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 33 H 0.07 1.94 6.15 -2.39 -0.01 1.93 16 34 H 0.13 1.89 7.92 -2.39 -0.02 1.87 16 35 H 0.10 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.06 1.37 8.02 -2.39 -0.02 1.35 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 41 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 42 H 0.02 0.84 6.75 -2.39 -0.02 0.82 16 43 H 0.04 1.89 4.50 -2.39 -0.01 1.88 16 44 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 45 H 0.10 2.06 8.00 -2.38 -0.02 2.05 16 46 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.13 1.98 6.86 -2.38 -0.02 1.97 16 48 H 0.40 12.36 8.80 -92.70 -0.82 11.54 16 49 H 0.09 2.77 5.97 -2.39 -0.01 2.76 16 50 H 0.04 1.46 8.11 -2.39 -0.02 1.44 16 Total: -1.00 -74.99 372.18 0.58 -74.40 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.02 Total: 20.39 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: 6.02 Total: 28.20 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -7.02 Total: -127.52 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.10 Total: -43.93 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.66 Total: 48.46 kcal Total: -74.99 0.58 -74.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981955294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.977 kcal (2) G-P(sol) polarization free energy of solvation -74.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds