Wall clock time and date at job start Tue Mar 31 2020 19:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53760 * 112.06725 * 2 1 4 4 N 1.47201 * 106.40985 * 217.90228 * 3 2 1 5 5 C 1.36934 * 126.70459 * 211.06514 * 4 3 2 6 6 H 1.07997 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00106 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99646 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47291 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.46791 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47214 * 299.99610 * 9 7 5 13 13 C 1.47206 * 106.59206 * 31.33216 * 4 3 2 14 14 C 1.53754 * 106.40858 * 328.67631 * 13 4 3 15 15 C 1.53005 * 112.90544 * 141.48146 * 14 13 4 16 16 C 1.54314 * 109.07818 * 266.78112 * 14 13 4 17 17 N 1.48110 * 104.71097 * 88.34072 * 16 14 13 18 18 C 1.34773 * 127.84243 * 219.78008 * 17 16 14 19 19 O 1.21277 * 119.99952 * 356.19467 * 18 17 16 20 20 C 1.50705 * 119.99848 * 176.19278 * 18 17 16 21 21 C 1.52988 * 110.21679 * 281.53555 * 20 18 17 22 22 C 1.54478 * 110.24234 * 159.51234 * 20 18 17 23 23 C 1.54629 * 101.76780 * 266.41666 * 22 20 18 24 24 C 1.51283 * 104.19523 * 335.20179 * 23 22 20 25 25 O 1.21282 * 124.94398 * 196.22561 * 24 23 22 26 26 N 1.34424 * 110.11287 * 16.25767 * 24 23 22 27 27 C 1.48117 * 104.31182 * 39.78349 * 17 16 14 28 28 H 1.09005 * 109.47867 * 58.98464 * 1 2 3 29 29 H 1.09003 * 109.47440 * 178.98327 * 1 2 3 30 30 H 1.08996 * 109.47474 * 298.98095 * 1 2 3 31 31 H 1.08997 * 110.06819 * 98.66466 * 3 2 1 32 32 H 1.09003 * 110.11678 * 337.16849 * 3 2 1 33 33 H 0.97003 * 119.99432 * 179.97438 * 8 7 5 34 34 H 1.09008 * 110.06778 * 87.91187 * 13 4 3 35 35 H 1.08992 * 110.07063 * 209.43634 * 13 4 3 36 36 H 1.08996 * 109.46954 * 301.25059 * 15 14 13 37 37 H 1.08997 * 109.47047 * 61.25060 * 15 14 13 38 38 H 1.09001 * 109.47133 * 181.25448 * 15 14 13 39 39 H 1.08997 * 110.38971 * 329.52675 * 16 14 13 40 40 H 1.09012 * 110.48584 * 207.19624 * 16 14 13 41 41 H 1.09007 * 109.47258 * 59.30062 * 21 20 18 42 42 H 1.09005 * 109.47342 * 179.29725 * 21 20 18 43 43 H 1.08996 * 109.47409 * 299.29991 * 21 20 18 44 44 H 1.08997 * 110.97572 * 24.53671 * 22 20 18 45 45 H 1.09003 * 110.96661 * 148.29696 * 22 20 18 46 46 H 1.09001 * 110.48612 * 216.53237 * 23 22 20 47 47 H 1.08995 * 110.59591 * 93.93843 * 23 22 20 48 48 H 0.97001 * 124.35005 * 180.38470 * 26 24 23 49 49 H 1.08999 * 110.38339 * 201.41231 * 27 17 16 50 50 H 1.09002 * 110.48011 * 79.08144 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3918 -0.8674 5 6 4.4245 2.1573 -0.7395 6 1 4.5018 2.8750 0.0637 7 6 5.4687 2.0109 -1.6423 8 7 5.3746 1.1358 -2.6210 9 14 7.0080 3.0547 -1.4674 10 1 7.6358 2.7935 -0.1472 11 1 7.9661 2.7086 -2.5479 12 1 6.6458 4.4913 -1.5678 13 6 3.0329 0.3794 -1.9031 14 6 2.1377 -0.6868 -1.2505 15 6 1.0608 -1.2208 -2.1971 16 6 3.0265 -1.8157 -0.6874 17 7 3.3640 -1.3786 0.6869 18 6 4.5442 -1.4988 1.3264 19 8 5.4661 -2.0794 0.7937 20 6 4.7183 -0.9118 2.7034 21 6 4.9408 0.5989 2.6099 22 6 5.9063 -1.5854 3.4253 23 6 5.1990 -2.7131 4.2121 24 6 3.7817 -2.2127 4.3842 25 8 2.9787 -2.6592 5.1758 26 7 3.5417 -1.2016 3.5315 27 6 2.1099 -0.7794 1.1989 28 1 -0.3635 0.5295 -0.8807 29 1 -0.3634 -1.0275 -0.0182 30 1 -0.3634 0.4979 0.8989 31 1 2.3910 1.7136 1.0121 32 1 1.3742 2.1268 -0.3972 33 1 6.1042 1.0337 -3.2521 34 1 2.5167 0.8347 -2.7485 35 1 3.9692 -0.0698 -2.2339 36 1 0.4330 -0.3965 -2.5352 37 1 1.5350 -1.6929 -3.0575 38 1 0.4471 -1.9535 -1.6730 39 1 3.9316 -1.9206 -1.2856 40 1 2.4774 -2.7571 -0.6625 41 1 4.0851 1.0626 2.1190 42 1 5.0527 1.0125 3.6122 43 1 5.8431 0.7982 2.0318 44 1 6.6165 -1.9965 2.7079 45 1 6.3983 -0.8868 4.1022 46 1 5.6733 -2.8564 5.1829 47 1 5.2090 -3.6424 3.6426 48 1 2.6991 -0.7249 3.4710 49 1 2.3228 -0.1015 2.0254 50 1 1.4169 -1.5585 1.5165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982523103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:49 Heat of formation + Delta-G solvation = -25.122569 kcal Electronic energy + Delta-G solvation = -32809.762189 eV Core-core repulsion = 28838.052153 eV Total energy + Delta-G solvation = -3971.710036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.21811 -39.92357 -38.23289 -36.26232 -34.80017 -33.09029 -31.96205 -31.20420 -30.75708 -30.62974 -26.92475 -26.08919 -25.83600 -25.02222 -24.64434 -22.75927 -21.68889 -20.83608 -19.85835 -19.43009 -17.93884 -17.33554 -16.79257 -16.61166 -15.66908 -15.62813 -15.05358 -14.70420 -14.42366 -14.11440 -13.87301 -13.70574 -13.53460 -13.44161 -13.31662 -13.10780 -12.85831 -12.58783 -12.50821 -12.16736 -12.12133 -11.91850 -11.71436 -11.56397 -11.42668 -11.37610 -11.15245 -10.96132 -10.92221 -10.86846 -10.65593 -10.19961 -10.13403 -9.99453 -9.86931 -9.80795 -9.74461 -9.45883 -8.89311 -8.77837 -8.24116 -6.89082 -5.67457 -3.11816 2.53527 2.81094 3.23915 3.35763 3.40012 3.40640 3.43018 4.25123 4.42986 4.47513 4.57914 4.70840 4.82338 5.00283 5.05376 5.18312 5.31188 5.41093 5.43858 5.50566 5.52840 5.59597 5.60779 5.69329 5.78300 5.83706 5.84130 5.90762 5.92446 6.00609 6.06988 6.08827 6.13692 6.23997 6.26797 6.34748 6.43881 6.47431 6.53808 6.63770 6.70190 6.76039 6.90777 6.94136 7.39165 7.53638 7.81012 7.96064 8.16954 8.37383 8.50707 9.16451 9.78361 10.45397 11.33487 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.006225 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.498995 B = 4496.566145 C = 6012.757917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 C 0.146 3.854 4 N -0.588 5.588 5 C -0.219 4.219 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.915 5.915 9 Si 0.909 3.091 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.149 3.851 14 C -0.092 4.092 15 C -0.122 4.122 16 C 0.125 3.875 17 N -0.594 5.594 18 C 0.544 3.456 19 O -0.534 6.534 20 C 0.147 3.853 21 C -0.149 4.149 22 C -0.116 4.116 23 C -0.157 4.157 24 C 0.522 3.478 25 O -0.539 6.539 26 N -0.720 5.720 27 C 0.117 3.883 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.018 0.982 33 H 0.253 0.747 34 H 0.006 0.994 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.410 0.590 49 H 0.069 0.931 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 -4.614 8.382 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 C 0.019 3.981 4 N -0.311 5.311 5 C -0.347 4.347 6 H 0.092 0.908 7 C -0.201 4.201 8 N -0.563 5.563 9 Si 0.740 3.260 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.024 3.976 14 C -0.095 4.095 15 C -0.180 4.180 16 C 0.003 3.997 17 N -0.325 5.325 18 C 0.330 3.670 19 O -0.410 6.410 20 C 0.057 3.943 21 C -0.207 4.207 22 C -0.154 4.154 23 C -0.197 4.197 24 C 0.309 3.691 25 O -0.416 6.416 26 N -0.380 5.380 27 C -0.007 4.007 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.143 0.857 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.252 0.748 49 H 0.087 0.913 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.439 -5.183 8.471 11.322 hybrid contribution 0.263 0.977 -0.100 1.017 sum -5.176 -4.206 8.371 10.703 Atomic orbital electron populations 1.21625 0.93479 1.01381 1.01739 1.22393 0.94689 0.97697 0.94517 1.21372 0.90040 0.92041 0.94660 1.44320 1.13673 1.43367 1.29725 1.18873 0.91756 1.13792 1.10278 0.90766 1.24711 0.98468 0.99434 0.97493 1.69558 1.32142 1.37033 1.17590 0.86238 0.82977 0.79555 0.77238 1.21134 1.21563 1.21348 1.21972 0.99078 0.87449 0.89141 1.22540 0.95453 0.96627 0.94837 1.21593 0.97472 1.00323 0.98602 1.22371 0.99420 0.95375 0.82523 1.48451 1.09808 1.58656 1.15620 1.19960 0.80954 0.79317 0.86731 1.90686 1.39356 1.43088 1.67856 1.21233 0.86530 0.98297 0.88215 1.22085 1.05382 0.90442 1.02761 1.22667 0.96304 0.96913 0.99485 1.22391 0.93571 1.00547 1.03233 1.20949 0.90077 0.79066 0.79006 1.90735 1.52669 1.60527 1.37671 1.46791 1.15931 1.36923 1.38317 1.22542 0.85579 0.96084 0.96526 0.91941 0.92654 0.92898 0.94538 0.96462 0.93579 0.97636 0.85657 0.92320 0.92605 0.93198 0.89518 0.92710 0.90415 0.91389 0.89510 0.87150 0.89090 0.87825 0.87732 0.74758 0.91252 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 7.54 37.15 0.28 -1.19 16 2 C -0.09 -1.36 1.08 -152.33 -0.16 -1.53 16 3 C 0.15 2.67 6.30 -3.26 -0.02 2.65 16 4 N -0.59 -13.44 3.39 -171.18 -0.58 -14.02 16 5 C -0.22 -5.57 10.34 -15.06 -0.16 -5.73 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.13 5.49 -17.43 -0.10 -0.23 16 8 N -0.92 -25.62 10.08 55.49 0.56 -25.06 16 9 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.15 3.32 5.32 -3.26 -0.02 3.31 16 14 C -0.09 -1.56 1.08 -152.33 -0.16 -1.73 16 15 C -0.12 -1.69 7.59 37.16 0.28 -1.41 16 16 C 0.13 2.21 6.05 -2.47 -0.01 2.19 16 17 N -0.59 -10.18 3.31 -169.45 -0.56 -10.74 16 18 C 0.54 9.86 6.88 -10.98 -0.08 9.79 16 19 O -0.53 -11.49 15.84 5.56 0.09 -11.40 16 20 C 0.15 2.10 0.74 -132.06 -0.10 2.01 16 21 C -0.15 -2.14 8.69 37.15 0.32 -1.82 16 22 C -0.12 -1.41 6.13 -25.10 -0.15 -1.57 16 23 C -0.16 -1.83 6.85 -26.74 -0.18 -2.01 16 24 C 0.52 7.36 8.43 -10.86 -0.09 7.27 16 25 O -0.54 -9.30 18.03 5.56 0.10 -9.20 16 26 N -0.72 -9.35 4.52 -47.68 -0.22 -9.57 16 27 C 0.12 1.65 4.80 -2.47 -0.01 1.64 16 28 H 0.06 0.76 7.20 -51.93 -0.37 0.38 16 29 H 0.05 0.59 7.21 -51.93 -0.37 0.21 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.64 6.34 -51.93 -0.33 0.31 16 32 H 0.02 0.33 7.90 -51.93 -0.41 -0.08 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 34 H 0.01 0.14 7.92 -51.92 -0.41 -0.27 16 35 H 0.13 3.27 4.68 -51.93 -0.24 3.03 16 36 H 0.06 0.80 7.18 -51.93 -0.37 0.43 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.59 7.21 -51.93 -0.37 0.22 16 39 H 0.09 1.81 7.20 -51.93 -0.37 1.44 16 40 H 0.05 0.85 7.96 -51.92 -0.41 0.43 16 41 H 0.08 1.23 6.11 -51.92 -0.32 0.91 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.11 1.50 6.85 -51.93 -0.36 1.14 16 45 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.41 4.92 6.27 -40.82 -0.26 4.66 16 49 H 0.07 0.92 3.64 -51.93 -0.19 0.73 16 50 H 0.06 0.82 7.97 -51.93 -0.41 0.40 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -31.54 373.89 -8.06 -39.60 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.70 Total: 6.72 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.36 Total: 11.63 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.80 Total: -59.38 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.19 Total: -20.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.54 -8.06 -39.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982523103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.481 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds