Wall clock time and date at job start Tue Mar 31 2020 19:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53760 * 112.06725 * 2 1 4 4 N 1.47201 * 106.40985 * 217.90228 * 3 2 1 5 5 C 1.36934 * 126.70459 * 211.06514 * 4 3 2 6 6 H 1.07997 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00106 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99646 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47291 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.46791 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47214 * 299.99610 * 9 7 5 13 13 C 1.47206 * 106.59206 * 31.33216 * 4 3 2 14 14 C 1.53754 * 106.40858 * 328.67631 * 13 4 3 15 15 C 1.53005 * 112.90544 * 141.48146 * 14 13 4 16 16 C 1.54314 * 109.07818 * 266.78112 * 14 13 4 17 17 N 1.48110 * 104.71097 * 88.34072 * 16 14 13 18 18 C 1.34773 * 127.84243 * 219.78008 * 17 16 14 19 19 O 1.21277 * 119.99952 * 356.19467 * 18 17 16 20 20 C 1.50705 * 119.99848 * 176.19278 * 18 17 16 21 21 C 1.52988 * 110.21679 * 281.53555 * 20 18 17 22 22 C 1.54478 * 110.24234 * 159.51234 * 20 18 17 23 23 C 1.54629 * 101.76780 * 266.41666 * 22 20 18 24 24 C 1.51283 * 104.19523 * 335.20179 * 23 22 20 25 25 O 1.21282 * 124.94398 * 196.22561 * 24 23 22 26 26 N 1.34424 * 110.11287 * 16.25767 * 24 23 22 27 27 C 1.48117 * 104.31182 * 39.78349 * 17 16 14 28 28 H 1.09005 * 109.47867 * 58.98464 * 1 2 3 29 29 H 1.09003 * 109.47440 * 178.98327 * 1 2 3 30 30 H 1.08996 * 109.47474 * 298.98095 * 1 2 3 31 31 H 1.08997 * 110.06819 * 98.66466 * 3 2 1 32 32 H 1.09003 * 110.11678 * 337.16849 * 3 2 1 33 33 H 0.97003 * 119.99432 * 179.97438 * 8 7 5 34 34 H 1.09008 * 110.06778 * 87.91187 * 13 4 3 35 35 H 1.08992 * 110.07063 * 209.43634 * 13 4 3 36 36 H 1.08996 * 109.46954 * 301.25059 * 15 14 13 37 37 H 1.08997 * 109.47047 * 61.25060 * 15 14 13 38 38 H 1.09001 * 109.47133 * 181.25448 * 15 14 13 39 39 H 1.08997 * 110.38971 * 329.52675 * 16 14 13 40 40 H 1.09012 * 110.48584 * 207.19624 * 16 14 13 41 41 H 1.09007 * 109.47258 * 59.30062 * 21 20 18 42 42 H 1.09005 * 109.47342 * 179.29725 * 21 20 18 43 43 H 1.08996 * 109.47409 * 299.29991 * 21 20 18 44 44 H 1.08997 * 110.97572 * 24.53671 * 22 20 18 45 45 H 1.09003 * 110.96661 * 148.29696 * 22 20 18 46 46 H 1.09001 * 110.48612 * 216.53237 * 23 22 20 47 47 H 1.08995 * 110.59591 * 93.93843 * 23 22 20 48 48 H 0.97001 * 124.35005 * 180.38470 * 26 24 23 49 49 H 1.08999 * 110.38339 * 201.41231 * 27 17 16 50 50 H 1.09002 * 110.48011 * 79.08144 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3918 -0.8674 5 6 4.4245 2.1573 -0.7395 6 1 4.5018 2.8750 0.0637 7 6 5.4687 2.0109 -1.6423 8 7 5.3746 1.1358 -2.6210 9 14 7.0080 3.0547 -1.4674 10 1 7.6358 2.7935 -0.1472 11 1 7.9661 2.7086 -2.5479 12 1 6.6458 4.4913 -1.5678 13 6 3.0329 0.3794 -1.9031 14 6 2.1377 -0.6868 -1.2505 15 6 1.0608 -1.2208 -2.1971 16 6 3.0265 -1.8157 -0.6874 17 7 3.3640 -1.3786 0.6869 18 6 4.5442 -1.4988 1.3264 19 8 5.4661 -2.0794 0.7937 20 6 4.7183 -0.9118 2.7034 21 6 4.9408 0.5989 2.6099 22 6 5.9063 -1.5854 3.4253 23 6 5.1990 -2.7131 4.2121 24 6 3.7817 -2.2127 4.3842 25 8 2.9787 -2.6592 5.1758 26 7 3.5417 -1.2016 3.5315 27 6 2.1099 -0.7794 1.1989 28 1 -0.3635 0.5295 -0.8807 29 1 -0.3634 -1.0275 -0.0182 30 1 -0.3634 0.4979 0.8989 31 1 2.3910 1.7136 1.0121 32 1 1.3742 2.1268 -0.3972 33 1 6.1042 1.0337 -3.2521 34 1 2.5167 0.8347 -2.7485 35 1 3.9692 -0.0698 -2.2339 36 1 0.4330 -0.3965 -2.5352 37 1 1.5350 -1.6929 -3.0575 38 1 0.4471 -1.9535 -1.6730 39 1 3.9316 -1.9206 -1.2856 40 1 2.4774 -2.7571 -0.6625 41 1 4.0851 1.0626 2.1190 42 1 5.0527 1.0125 3.6122 43 1 5.8431 0.7982 2.0318 44 1 6.6165 -1.9965 2.7079 45 1 6.3983 -0.8868 4.1022 46 1 5.6733 -2.8564 5.1829 47 1 5.2090 -3.6424 3.6426 48 1 2.6991 -0.7249 3.4710 49 1 2.3228 -0.1015 2.0254 50 1 1.4169 -1.5585 1.5165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982523103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:47 Heat of formation + Delta-G solvation = -46.637894 kcal Electronic energy + Delta-G solvation = -32810.695164 eV Core-core repulsion = 28838.052153 eV Total energy + Delta-G solvation = -3972.643010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.45689 -41.21539 -39.59848 -37.51595 -36.45636 -34.61848 -33.30846 -32.42894 -32.26902 -31.81627 -28.30085 -27.79329 -26.99737 -26.49718 -25.79138 -24.23578 -23.05374 -21.99345 -21.27077 -20.71367 -19.28350 -18.97207 -18.12834 -17.93695 -17.10374 -16.93181 -16.60840 -16.17680 -15.69712 -15.53848 -15.27093 -14.98036 -14.84414 -14.75909 -14.46475 -14.36879 -14.29013 -13.85005 -13.68849 -13.51958 -13.36137 -13.28098 -13.10868 -12.93922 -12.83401 -12.70700 -12.55770 -12.48148 -12.14023 -12.11010 -12.03535 -11.99338 -11.67709 -11.44064 -11.37359 -11.15354 -11.04384 -10.93597 -10.76257 -10.13136 -9.65962 -8.79544 -7.69300 -5.13735 1.42852 1.44335 1.45909 1.48311 1.51853 1.97833 2.23185 2.50536 3.18809 3.32055 3.38364 3.45882 3.49287 3.71014 3.75470 3.84414 3.92765 4.05363 4.18397 4.31933 4.34063 4.38634 4.44472 4.59312 4.63065 4.70252 4.73335 4.77200 4.80955 4.83267 4.88461 4.95674 4.97097 5.03172 5.10884 5.15027 5.20476 5.24738 5.28179 5.34068 5.42633 5.49695 5.57986 5.61225 5.70604 5.86186 5.92258 6.44123 6.61845 7.08186 7.13104 7.15557 7.85829 8.52506 9.29035 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010573 B = 0.006225 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.498995 B = 4496.566145 C = 6012.757917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 C 0.140 3.860 4 N -0.605 5.605 5 C -0.211 4.211 6 H 0.082 0.918 7 C -0.065 4.065 8 N -0.944 5.944 9 Si 0.961 3.039 10 H -0.276 1.276 11 H -0.304 1.304 12 H -0.279 1.279 13 C 0.153 3.847 14 C -0.084 4.084 15 C -0.116 4.116 16 C 0.125 3.875 17 N -0.600 5.600 18 C 0.530 3.470 19 O -0.581 6.581 20 C 0.156 3.844 21 C -0.141 4.141 22 C -0.112 4.112 23 C -0.150 4.150 24 C 0.524 3.476 25 O -0.569 6.569 26 N -0.707 5.707 27 C 0.116 3.884 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.240 0.760 34 H -0.023 1.023 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.131 0.869 47 H 0.103 0.897 48 H 0.416 0.584 49 H 0.082 0.918 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -4.670 11.278 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C 0.014 3.986 4 N -0.328 5.328 5 C -0.340 4.340 6 H 0.100 0.900 7 C -0.257 4.257 8 N -0.595 5.595 9 Si 0.790 3.210 10 H -0.202 1.202 11 H -0.230 1.230 12 H -0.205 1.205 13 C 0.028 3.972 14 C -0.086 4.086 15 C -0.174 4.174 16 C 0.002 3.998 17 N -0.330 5.330 18 C 0.317 3.683 19 O -0.460 6.460 20 C 0.065 3.935 21 C -0.199 4.199 22 C -0.150 4.150 23 C -0.190 4.190 24 C 0.312 3.688 25 O -0.449 6.449 26 N -0.366 5.366 27 C -0.007 4.007 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.050 0.950 34 H -0.006 1.006 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.259 0.741 49 H 0.100 0.900 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.673 -5.204 11.396 14.691 hybrid contribution 0.902 1.042 -1.045 1.730 sum -6.770 -4.163 10.350 13.050 Atomic orbital electron populations 1.21629 0.90016 1.03214 1.02809 1.22359 0.97120 0.94976 0.93588 1.21607 0.88372 0.94422 0.94167 1.44524 1.14449 1.43224 1.30614 1.19198 0.92286 1.13150 1.09357 0.90041 1.25411 1.01222 1.01055 0.98036 1.69878 1.32155 1.38909 1.18558 0.85400 0.80089 0.78544 0.76917 1.20153 1.23036 1.20528 1.21693 0.98011 0.88497 0.89048 1.22387 0.95365 0.94868 0.95990 1.21577 0.96677 1.01136 0.97966 1.22316 0.97835 0.96968 0.82633 1.48655 1.10689 1.58289 1.15363 1.20787 0.80544 0.78810 0.88116 1.90658 1.40864 1.45161 1.69316 1.21116 0.87883 0.98057 0.86420 1.22010 1.03368 0.90425 1.04122 1.22704 0.95323 0.97609 0.99407 1.22410 0.92097 0.99963 1.04491 1.21230 0.90580 0.78692 0.78324 1.90729 1.53755 1.61398 1.38968 1.46652 1.15779 1.36711 1.37504 1.22772 0.84567 0.97003 0.96355 0.92166 0.90361 0.90733 0.93435 0.96363 0.95009 1.00556 0.89875 0.91859 0.93327 0.89792 0.94179 0.89830 0.91870 0.87958 0.92158 0.88839 0.86206 0.85077 0.87897 0.74074 0.89971 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 7.54 71.98 0.54 -1.72 16 2 C -0.08 -2.15 1.08 -50.77 -0.05 -2.20 16 3 C 0.14 4.92 6.30 86.50 0.55 5.46 16 4 N -0.61 -28.14 3.39 -695.49 -2.36 -30.50 16 5 C -0.21 -10.95 10.34 84.03 0.87 -10.08 16 6 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 7 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 8 N -0.94 -56.21 10.08 21.65 0.22 -55.99 16 9 Si 0.96 45.33 29.55 68.60 2.03 47.36 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.15 7.14 5.32 86.50 0.46 7.60 16 14 C -0.08 -2.79 1.08 -50.77 -0.05 -2.84 16 15 C -0.12 -3.00 7.59 71.98 0.55 -2.45 16 16 C 0.13 4.42 6.05 86.52 0.52 4.94 16 17 N -0.60 -20.09 3.31 -808.42 -2.68 -22.77 16 18 C 0.53 19.23 6.88 87.66 0.60 19.83 16 19 O -0.58 -26.03 15.84 -3.02 -0.05 -26.08 16 20 C 0.16 4.20 0.74 3.31 0.00 4.21 16 21 C -0.14 -3.84 8.69 71.98 0.63 -3.21 16 22 C -0.11 -2.54 6.13 31.65 0.19 -2.35 16 23 C -0.15 -3.10 6.85 30.59 0.21 -2.89 16 24 C 0.52 13.31 8.43 87.90 0.74 14.05 16 25 O -0.57 -18.16 18.03 -3.04 -0.05 -18.21 16 26 N -0.71 -16.37 4.52 -423.36 -1.91 -18.29 16 27 C 0.12 2.92 4.80 86.51 0.42 3.33 16 28 H 0.06 1.21 7.20 -2.38 -0.02 1.20 16 29 H 0.08 1.19 7.21 -2.39 -0.02 1.18 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.56 6.34 -2.39 -0.02 1.55 16 32 H 0.02 0.66 7.90 -2.39 -0.02 0.64 16 33 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 34 H -0.02 -1.19 7.92 -2.38 -0.02 -1.21 16 35 H 0.08 4.68 4.68 -2.39 -0.01 4.66 16 36 H 0.06 1.59 7.18 -2.39 -0.02 1.57 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.63 7.21 -2.39 -0.02 1.61 16 39 H 0.04 1.79 7.20 -2.39 -0.02 1.77 16 40 H 0.08 2.45 7.96 -2.38 -0.02 2.43 16 41 H 0.06 1.89 6.11 -2.38 -0.01 1.87 16 42 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.09 2.51 6.85 -2.39 -0.02 2.50 16 45 H 0.12 2.01 7.92 -2.39 -0.02 1.99 16 46 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.42 8.51 6.27 -92.71 -0.58 7.93 16 49 H 0.08 1.88 3.64 -2.39 -0.01 1.87 16 50 H 0.09 1.91 7.97 -2.39 -0.02 1.90 16 Total: -1.00 -74.37 373.89 2.21 -72.16 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.38 Total: 23.77 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: 6.63 Total: 28.55 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -6.73 Total: -127.54 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.10 Total: -44.29 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -74.37 2.21 -72.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982523103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.518 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds