Wall clock time and date at job start Tue Mar 31 2020 19:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.67370 * 2 1 4 4 O 1.21276 * 119.99904 * 120.50298 * 3 2 1 5 5 N 1.34775 * 119.99723 * 300.49759 * 3 2 1 6 6 C 1.46501 * 119.99624 * 179.97438 * 5 3 2 7 7 H 1.08995 * 115.56602 * 9.29971 * 6 5 3 8 8 C 1.53038 * 117.50364 * 223.58511 * 6 5 3 9 9 C 1.52817 * 117.50163 * 154.99975 * 6 5 3 10 10 C 1.53188 * 117.71402 * 359.86596 * 9 6 5 11 11 C 1.53347 * 108.76813 * 158.87848 * 10 9 6 12 12 N 1.46836 * 108.81754 * 51.30711 * 11 10 9 13 13 C 1.36941 * 120.38097 * 123.10859 * 12 11 10 14 14 H 1.07998 * 119.99584 * 331.48635 * 13 12 11 15 15 C 1.38806 * 120.00022 * 151.48478 * 13 12 11 16 16 N 1.31613 * 120.00075 * 335.05678 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 155.05560 * 15 13 12 18 18 H 1.48503 * 109.46888 * 90.00295 * 17 15 13 19 19 H 1.48502 * 109.47423 * 330.00084 * 17 15 13 20 20 H 1.48501 * 109.47044 * 209.99672 * 17 15 13 21 21 C 1.46837 * 119.23801 * 303.38182 * 12 11 10 22 22 C 1.52866 * 109.08127 * 56.58092 * 21 12 11 23 23 C 1.53344 * 109.67359 * 120.49998 * 2 1 3 24 24 C 1.52922 * 108.67452 * 52.23569 * 23 2 1 25 25 N 1.45754 * 110.48878 * 50.75375 * 24 23 2 26 26 C 1.33361 * 124.10276 * 340.90359 * 25 24 23 27 27 O 1.21285 * 118.24058 * 182.26802 * 26 25 24 28 28 C 1.50174 * 123.50957 * 2.26619 * 26 25 24 29 29 H 1.09006 * 109.46983 * 59.99694 * 1 2 3 30 30 H 1.08998 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46652 * 300.00144 * 1 2 3 32 32 H 0.96998 * 120.00172 * 0.02562 * 5 3 2 33 33 H 1.08996 * 117.50218 * 145.04672 * 8 6 5 34 34 H 1.08994 * 117.50070 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.58932 * 39.09222 * 10 9 6 36 36 H 1.08996 * 109.58716 * 278.66570 * 10 9 6 37 37 H 1.09004 * 109.57832 * 291.50886 * 11 10 9 38 38 H 1.09005 * 109.58145 * 171.11144 * 11 10 9 39 39 H 0.97001 * 120.00453 * 354.27738 * 16 15 13 40 40 H 1.09004 * 109.58266 * 176.41814 * 21 12 11 41 41 H 1.09003 * 109.58187 * 296.81706 * 21 12 11 42 42 H 1.08999 * 109.67154 * 189.04732 * 22 21 12 43 43 H 1.08997 * 109.56434 * 68.72043 * 22 21 12 44 44 H 1.09004 * 109.60444 * 171.99057 * 23 2 1 45 45 H 1.08997 * 109.60391 * 292.31679 * 23 2 1 46 46 H 1.09003 * 109.29992 * 171.06037 * 24 23 2 47 47 H 1.08995 * 109.30219 * 290.64916 * 24 23 2 48 48 H 0.97002 * 117.95205 * 160.92154 * 25 24 23 49 49 H 1.09004 * 109.38521 * 222.26205 * 28 26 25 50 50 H 1.09001 * 109.41242 * 102.51778 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4190 0.0000 4 8 2.7435 1.8105 0.9049 5 7 1.7064 2.2530 -1.0057 6 6 2.1992 3.6326 -1.0054 7 1 2.9499 3.8638 -0.2498 8 6 1.2077 4.7373 -1.3778 9 6 2.3147 4.3410 -2.3546 10 6 1.9105 3.5576 -3.6074 11 6 1.5928 4.5525 -4.7302 12 7 2.7125 5.4935 -4.8602 13 6 3.3622 5.6358 -6.0573 14 1 3.4056 4.8082 -6.7497 15 6 3.9648 6.8437 -6.3805 16 7 3.5347 7.9609 -5.8337 17 14 5.3864 6.8836 -7.5917 18 1 4.8590 7.0627 -8.9683 19 1 6.1401 5.6064 -7.5127 20 1 6.2903 8.0133 -7.2571 21 6 3.1315 6.2757 -3.6903 22 6 3.4765 5.3204 -2.5479 23 6 2.0463 -0.7328 1.2441 24 6 1.3757 -2.1052 1.3175 25 7 1.5041 -2.8045 0.0451 26 6 1.7817 -2.2045 -1.1131 27 8 1.8230 -2.8847 -2.1164 28 6 2.0461 -0.7318 -1.2415 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1414 1.9399 -1.7293 33 1 1.3062 5.6951 -0.8671 34 1 0.1890 4.4374 -1.6234 35 1 1.0281 2.9548 -3.3927 36 1 2.7319 2.9103 -3.9144 37 1 0.6821 5.0998 -4.4865 38 1 1.4575 4.0139 -5.6682 39 1 2.7453 7.9525 -5.2701 40 1 4.0087 6.8709 -3.9439 41 1 2.3190 6.9329 -3.3802 42 1 3.6332 5.8872 -1.6302 43 1 4.3828 4.7678 -2.7954 44 1 3.1269 -0.8572 1.1733 45 1 1.8022 -0.1558 2.1360 46 1 1.8485 -2.6957 2.1023 47 1 0.3185 -1.9777 1.5499 48 1 1.3795 -3.7664 0.0403 49 1 1.5366 -0.3485 -2.1256 50 1 3.1183 -0.5635 -1.3415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016679325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:40 Heat of formation + Delta-G solvation = -36.764890 kcal Electronic energy + Delta-G solvation = -30074.853183 eV Core-core repulsion = 26102.638298 eV Total energy + Delta-G solvation = -3972.214885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.41382 -39.88103 -38.70503 -36.94099 -35.75213 -34.44023 -33.07497 -31.61764 -30.24570 -30.02002 -28.39715 -28.11829 -25.22550 -24.23416 -23.75742 -22.62950 -21.84553 -20.85054 -20.42065 -18.84536 -18.37417 -17.99705 -17.19052 -16.98386 -16.62161 -16.16065 -15.75054 -15.22400 -15.15281 -14.64078 -14.35219 -14.20257 -13.85515 -13.72258 -13.59518 -13.53217 -13.25531 -13.08841 -12.86226 -12.66091 -12.55706 -12.22868 -11.90821 -11.80799 -11.71439 -11.49424 -11.41670 -11.33940 -10.87285 -10.70799 -10.53956 -10.48768 -10.22228 -10.03085 -9.93095 -9.75870 -9.51991 -9.49273 -9.32459 -8.61822 -8.35694 -6.86580 -6.07071 -3.24230 2.25281 2.35547 2.85034 2.85992 3.49976 3.54364 3.69535 3.94605 4.00359 4.07864 4.17331 4.28202 4.55413 4.59121 4.63422 4.81513 4.84512 4.95974 4.99473 5.00842 5.09935 5.16443 5.24675 5.28770 5.35537 5.37254 5.46024 5.54343 5.58877 5.71037 5.74221 5.92280 5.93322 5.96447 6.14259 6.25562 6.33932 6.42362 6.44753 6.49494 6.51017 6.69662 6.79193 6.88204 7.06389 7.19885 7.32549 7.81561 8.01139 8.01781 8.58189 9.12347 9.84656 10.29138 11.20886 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002614 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.444932 B =10708.831496 C =11491.803803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C 0.528 3.472 4 O -0.536 6.536 5 N -0.691 5.691 6 C 0.070 3.930 7 H 0.133 0.867 8 C -0.182 4.182 9 C -0.098 4.098 10 C -0.097 4.097 11 C 0.152 3.848 12 N -0.596 5.596 13 C -0.350 4.350 14 H 0.055 0.945 15 C -0.024 4.024 16 N -0.916 5.916 17 Si 1.064 2.936 18 H -0.294 1.294 19 H -0.292 1.292 20 H -0.286 1.286 21 C 0.153 3.847 22 C -0.100 4.100 23 C -0.113 4.113 24 C 0.109 3.891 25 N -0.721 5.721 26 C 0.527 3.473 27 O -0.552 6.552 28 C -0.126 4.126 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.017 0.983 38 H 0.056 0.944 39 H 0.269 0.731 40 H 0.082 0.918 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.400 0.600 49 H 0.108 0.892 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 -17.889 16.893 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C 0.313 3.687 4 O -0.413 6.413 5 N -0.340 5.340 6 C -0.035 4.035 7 H 0.151 0.849 8 C -0.221 4.221 9 C -0.099 4.099 10 C -0.137 4.137 11 C 0.026 3.974 12 N -0.320 5.320 13 C -0.479 4.479 14 H 0.072 0.928 15 C -0.226 4.226 16 N -0.556 5.556 17 Si 0.894 3.106 18 H -0.222 1.222 19 H -0.219 1.219 20 H -0.212 1.212 21 C 0.027 3.973 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.016 4.016 25 N -0.374 5.374 26 C 0.314 3.686 27 O -0.430 6.430 28 C -0.166 4.166 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.236 0.764 49 H 0.126 0.874 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.907 -16.712 16.279 24.066 hybrid contribution -1.595 -1.463 0.463 2.214 sum -7.502 -18.175 16.742 25.824 Atomic orbital electron populations 1.21992 0.91730 1.03387 1.03369 1.20918 0.97877 0.92714 0.96978 1.20208 0.80131 0.86575 0.81771 1.90701 1.37391 1.77216 1.35958 1.45413 1.52105 1.11367 1.25145 1.21908 1.01080 0.79419 1.01118 0.84918 1.23539 0.95599 0.99119 1.03807 1.21942 0.98504 0.99551 0.89948 1.21622 0.99391 0.97815 0.94851 1.20822 0.90266 0.91033 0.95317 1.44020 1.33955 1.46979 1.07012 1.19978 1.33823 0.97856 0.96265 0.92767 1.25834 1.03714 0.91113 1.01905 1.70753 1.24856 1.26648 1.33317 0.83555 0.76407 0.75239 0.75391 1.22172 1.21876 1.21172 1.20820 0.98924 0.92128 0.85397 1.21667 0.95675 0.96988 0.99603 1.21752 1.01467 0.94123 0.97762 1.21482 1.01271 0.93599 0.85213 1.45492 1.72233 1.11833 1.07793 1.19921 0.75610 0.90352 0.82759 1.90800 1.51855 1.65009 1.35356 1.21771 1.04845 0.91377 0.98645 0.91579 0.90962 0.91121 0.76371 0.88283 0.88998 0.93580 0.91580 0.96512 0.92559 0.91997 0.89964 0.96501 0.92787 0.91785 0.90047 0.88516 0.89974 0.91045 0.76422 0.87393 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 7.72 37.16 0.29 -0.61 16 2 C -0.08 -0.63 0.63 -155.44 -0.10 -0.73 16 3 C 0.53 5.88 6.47 -10.99 -0.07 5.81 16 4 O -0.54 -7.84 15.47 5.56 0.09 -7.76 16 5 N -0.69 -7.65 5.16 -53.88 -0.28 -7.93 16 6 C 0.07 0.94 6.14 -68.00 -0.42 0.52 16 7 H 0.13 1.95 7.40 -51.93 -0.38 1.57 16 8 C -0.18 -2.44 9.87 -26.79 -0.26 -2.71 16 9 C -0.10 -1.53 1.94 -154.49 -0.30 -1.83 16 10 C -0.10 -1.56 5.37 -26.45 -0.14 -1.71 16 11 C 0.15 3.07 6.52 -3.68 -0.02 3.05 16 12 N -0.60 -14.54 2.79 -172.56 -0.48 -15.03 16 13 C -0.35 -9.64 9.45 -15.06 -0.14 -9.78 16 14 H 0.05 1.51 7.94 -52.49 -0.42 1.09 16 15 C -0.02 -0.66 4.67 -17.44 -0.08 -0.75 16 16 N -0.92 -27.13 12.37 55.49 0.69 -26.44 16 17 Si 1.06 25.15 29.99 -169.99 -5.10 20.05 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.15 3.49 4.69 -3.93 -0.02 3.47 16 22 C -0.10 -1.83 5.82 -26.71 -0.16 -1.99 16 23 C -0.11 -0.74 4.34 -26.59 -0.12 -0.86 16 24 C 0.11 0.47 6.39 -4.48 -0.03 0.44 16 25 N -0.72 -4.68 5.24 -61.39 -0.32 -5.00 16 26 C 0.53 5.15 7.15 -11.87 -0.08 5.07 16 27 O -0.55 -7.83 17.78 5.55 0.10 -7.73 16 28 C -0.13 -1.09 4.65 -28.10 -0.13 -1.22 16 29 H 0.07 0.39 7.55 -51.93 -0.39 0.00 16 30 H 0.07 0.39 5.89 -51.93 -0.31 0.09 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 3.78 6.29 -40.82 -0.26 3.52 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 39 H 0.27 8.02 6.82 -40.82 -0.28 7.74 16 40 H 0.08 2.12 6.17 -51.93 -0.32 1.80 16 41 H 0.02 0.39 7.99 -51.93 -0.41 -0.02 16 42 H 0.05 0.89 8.10 -51.93 -0.42 0.46 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 45 H 0.10 0.65 7.90 -51.93 -0.41 0.23 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 0.23 6.85 -51.93 -0.36 -0.13 16 48 H 0.40 2.20 8.80 -40.82 -0.36 1.84 16 49 H 0.11 0.89 7.94 -51.93 -0.41 0.47 16 50 H 0.11 0.99 8.09 -51.93 -0.42 0.57 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -34.27 385.47 -9.37 -43.65 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.09 Total: 4.20 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.79 Total: -3.82 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.40 Total: -54.40 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.18 Total: -15.49 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.27 -9.37 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016679325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.882 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds