Wall clock time and date at job start Tue Mar 31 2020 19:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.67370 * 2 1 4 4 O 1.21276 * 119.99904 * 120.50298 * 3 2 1 5 5 N 1.34775 * 119.99723 * 300.49759 * 3 2 1 6 6 C 1.46501 * 119.99624 * 179.97438 * 5 3 2 7 7 H 1.08995 * 115.56602 * 9.29971 * 6 5 3 8 8 C 1.53038 * 117.50364 * 223.58511 * 6 5 3 9 9 C 1.52817 * 117.50163 * 154.99975 * 6 5 3 10 10 C 1.53188 * 117.71402 * 359.86596 * 9 6 5 11 11 C 1.53347 * 108.76813 * 158.87848 * 10 9 6 12 12 N 1.46836 * 108.81754 * 51.30711 * 11 10 9 13 13 C 1.36941 * 120.38097 * 123.10859 * 12 11 10 14 14 H 1.07998 * 119.99584 * 331.48635 * 13 12 11 15 15 C 1.38806 * 120.00022 * 151.48478 * 13 12 11 16 16 N 1.31613 * 120.00075 * 335.05678 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 155.05560 * 15 13 12 18 18 H 1.48503 * 109.46888 * 90.00295 * 17 15 13 19 19 H 1.48502 * 109.47423 * 330.00084 * 17 15 13 20 20 H 1.48501 * 109.47044 * 209.99672 * 17 15 13 21 21 C 1.46837 * 119.23801 * 303.38182 * 12 11 10 22 22 C 1.52866 * 109.08127 * 56.58092 * 21 12 11 23 23 C 1.53344 * 109.67359 * 120.49998 * 2 1 3 24 24 C 1.52922 * 108.67452 * 52.23569 * 23 2 1 25 25 N 1.45754 * 110.48878 * 50.75375 * 24 23 2 26 26 C 1.33361 * 124.10276 * 340.90359 * 25 24 23 27 27 O 1.21285 * 118.24058 * 182.26802 * 26 25 24 28 28 C 1.50174 * 123.50957 * 2.26619 * 26 25 24 29 29 H 1.09006 * 109.46983 * 59.99694 * 1 2 3 30 30 H 1.08998 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46652 * 300.00144 * 1 2 3 32 32 H 0.96998 * 120.00172 * 0.02562 * 5 3 2 33 33 H 1.08996 * 117.50218 * 145.04672 * 8 6 5 34 34 H 1.08994 * 117.50070 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.58932 * 39.09222 * 10 9 6 36 36 H 1.08996 * 109.58716 * 278.66570 * 10 9 6 37 37 H 1.09004 * 109.57832 * 291.50886 * 11 10 9 38 38 H 1.09005 * 109.58145 * 171.11144 * 11 10 9 39 39 H 0.97001 * 120.00453 * 354.27738 * 16 15 13 40 40 H 1.09004 * 109.58266 * 176.41814 * 21 12 11 41 41 H 1.09003 * 109.58187 * 296.81706 * 21 12 11 42 42 H 1.08999 * 109.67154 * 189.04732 * 22 21 12 43 43 H 1.08997 * 109.56434 * 68.72043 * 22 21 12 44 44 H 1.09004 * 109.60444 * 171.99057 * 23 2 1 45 45 H 1.08997 * 109.60391 * 292.31679 * 23 2 1 46 46 H 1.09003 * 109.29992 * 171.06037 * 24 23 2 47 47 H 1.08995 * 109.30219 * 290.64916 * 24 23 2 48 48 H 0.97002 * 117.95205 * 160.92154 * 25 24 23 49 49 H 1.09004 * 109.38521 * 222.26205 * 28 26 25 50 50 H 1.09001 * 109.41242 * 102.51778 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4190 0.0000 4 8 2.7435 1.8105 0.9049 5 7 1.7064 2.2530 -1.0057 6 6 2.1992 3.6326 -1.0054 7 1 2.9499 3.8638 -0.2498 8 6 1.2077 4.7373 -1.3778 9 6 2.3147 4.3410 -2.3546 10 6 1.9105 3.5576 -3.6074 11 6 1.5928 4.5525 -4.7302 12 7 2.7125 5.4935 -4.8602 13 6 3.3622 5.6358 -6.0573 14 1 3.4056 4.8082 -6.7497 15 6 3.9648 6.8437 -6.3805 16 7 3.5347 7.9609 -5.8337 17 14 5.3864 6.8836 -7.5917 18 1 4.8590 7.0627 -8.9683 19 1 6.1401 5.6064 -7.5127 20 1 6.2903 8.0133 -7.2571 21 6 3.1315 6.2757 -3.6903 22 6 3.4765 5.3204 -2.5479 23 6 2.0463 -0.7328 1.2441 24 6 1.3757 -2.1052 1.3175 25 7 1.5041 -2.8045 0.0451 26 6 1.7817 -2.2045 -1.1131 27 8 1.8230 -2.8847 -2.1164 28 6 2.0461 -0.7318 -1.2415 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1414 1.9399 -1.7293 33 1 1.3062 5.6951 -0.8671 34 1 0.1890 4.4374 -1.6234 35 1 1.0281 2.9548 -3.3927 36 1 2.7319 2.9103 -3.9144 37 1 0.6821 5.0998 -4.4865 38 1 1.4575 4.0139 -5.6682 39 1 2.7453 7.9525 -5.2701 40 1 4.0087 6.8709 -3.9439 41 1 2.3190 6.9329 -3.3802 42 1 3.6332 5.8872 -1.6302 43 1 4.3828 4.7678 -2.7954 44 1 3.1269 -0.8572 1.1733 45 1 1.8022 -0.1558 2.1360 46 1 1.8485 -2.6957 2.1023 47 1 0.3185 -1.9777 1.5499 48 1 1.3795 -3.7664 0.0403 49 1 1.5366 -0.3485 -2.1256 50 1 3.1183 -0.5635 -1.3415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016679325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:39 Heat of formation + Delta-G solvation = -60.681541 kcal Electronic energy + Delta-G solvation = -30075.890287 eV Core-core repulsion = 26102.638298 eV Total energy + Delta-G solvation = -3973.251989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.15613 -40.89101 -39.88319 -37.80370 -37.29075 -35.19927 -34.32869 -33.22608 -31.79235 -30.72048 -29.81504 -28.87309 -26.17593 -25.84783 -24.47465 -24.15482 -23.08295 -22.24177 -21.37839 -20.01893 -19.45635 -19.04174 -18.61561 -17.75394 -17.47094 -17.00779 -16.54200 -16.21475 -16.06302 -15.98609 -15.78755 -15.44116 -15.31506 -15.06553 -14.73362 -14.61999 -14.43036 -14.31540 -14.02295 -13.68446 -13.38293 -13.13686 -13.02702 -12.82550 -12.78239 -12.62702 -12.51015 -12.48025 -12.04863 -12.02393 -11.93125 -11.92187 -11.82770 -11.45886 -11.37824 -11.26410 -10.84680 -10.57436 -10.43296 -10.08543 -9.73391 -8.88012 -8.22939 -5.39644 1.43727 1.54174 1.57277 1.65116 1.82539 1.96294 2.28387 2.65053 2.87286 3.22559 3.29876 3.41475 3.51197 3.59436 3.68771 3.73015 3.78723 3.88760 3.94766 4.02078 4.12318 4.35709 4.38240 4.47082 4.53610 4.56094 4.59043 4.67257 4.68958 4.77611 4.83176 4.87765 4.90754 4.91584 4.94927 4.98402 5.02880 5.11159 5.17297 5.21339 5.26063 5.30782 5.46467 5.51311 5.81074 5.85425 6.26266 6.40857 6.44202 7.09164 7.13035 7.15190 7.79961 8.24154 9.00345 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002614 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.444932 B =10708.831496 C =11491.803803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C 0.528 3.472 4 O -0.571 6.571 5 N -0.685 5.685 6 C 0.090 3.910 7 H 0.122 0.878 8 C -0.166 4.166 9 C -0.121 4.121 10 C -0.082 4.082 11 C 0.147 3.853 12 N -0.616 5.616 13 C -0.355 4.355 14 H 0.047 0.953 15 C -0.075 4.075 16 N -0.942 5.942 17 Si 1.112 2.888 18 H -0.282 1.282 19 H -0.279 1.279 20 H -0.289 1.289 21 C 0.161 3.839 22 C -0.089 4.089 23 C -0.114 4.114 24 C 0.110 3.890 25 N -0.708 5.708 26 C 0.527 3.473 27 O -0.604 6.604 28 C -0.125 4.125 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.048 0.952 39 H 0.255 0.745 40 H 0.043 0.957 41 H 0.008 0.992 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.408 0.592 49 H 0.112 0.888 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.068 -19.895 18.615 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C 0.316 3.684 4 O -0.450 6.450 5 N -0.335 5.335 6 C -0.016 4.016 7 H 0.140 0.860 8 C -0.204 4.204 9 C -0.122 4.122 10 C -0.121 4.121 11 C 0.022 3.978 12 N -0.340 5.340 13 C -0.485 4.485 14 H 0.065 0.935 15 C -0.271 4.271 16 N -0.584 5.584 17 Si 0.937 3.063 18 H -0.209 1.209 19 H -0.204 1.204 20 H -0.216 1.216 21 C 0.035 3.965 22 C -0.128 4.128 23 C -0.152 4.152 24 C -0.013 4.013 25 N -0.359 5.359 26 C 0.314 3.686 27 O -0.486 6.486 28 C -0.165 4.165 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.249 0.751 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.244 0.756 49 H 0.131 0.869 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.405 -18.761 18.048 27.066 hybrid contribution -1.171 -0.857 0.003 1.451 sum -8.576 -19.618 18.051 28.005 Atomic orbital electron populations 1.22024 0.89865 1.04333 1.04093 1.20877 0.99166 0.90190 0.97115 1.20774 0.79177 0.87576 0.80899 1.90693 1.38898 1.78086 1.37316 1.45362 1.52005 1.10469 1.25638 1.21621 1.00787 0.80748 0.98466 0.85993 1.23620 0.95866 0.99306 1.01636 1.21762 0.98980 1.00471 0.91011 1.21424 1.00627 0.96745 0.93350 1.20984 0.89071 0.90999 0.96785 1.44261 1.35370 1.47842 1.06572 1.20211 1.33677 0.97379 0.97228 0.93514 1.27109 1.05734 0.90893 1.03406 1.70865 1.25095 1.27526 1.34878 0.82902 0.73818 0.75549 0.74015 1.20899 1.20422 1.21551 1.20635 0.96852 0.92538 0.86451 1.21439 0.96337 0.96727 0.98340 1.21775 1.00873 0.95354 0.97212 1.21682 1.02722 0.92391 0.84465 1.45481 1.70320 1.12385 1.07677 1.20032 0.75202 0.90457 0.82893 1.90780 1.54551 1.65997 1.37272 1.21739 1.04400 0.91036 0.99332 0.91050 0.89897 0.90299 0.75126 0.87950 0.87059 0.89543 0.92848 0.96185 0.93298 0.93511 0.93879 0.97372 0.90981 0.93437 0.91454 0.88206 0.87452 0.88722 0.75598 0.86940 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.72 71.98 0.56 -0.70 16 2 C -0.07 -0.92 0.63 -52.79 -0.03 -0.95 16 3 C 0.53 10.65 6.47 87.66 0.57 11.22 16 4 O -0.57 -15.87 15.47 -3.02 -0.05 -15.91 16 5 N -0.69 -13.35 5.16 -442.77 -2.28 -15.64 16 6 C 0.09 2.22 6.14 44.94 0.28 2.49 16 7 H 0.12 3.39 7.40 -2.39 -0.02 3.37 16 8 C -0.17 -3.98 9.87 30.56 0.30 -3.68 16 9 C -0.12 -3.58 1.94 -52.17 -0.10 -3.68 16 10 C -0.08 -2.51 5.37 30.77 0.17 -2.34 16 11 C 0.15 5.87 6.52 86.43 0.56 6.43 16 12 N -0.62 -30.69 2.79 -699.86 -1.96 -32.64 16 13 C -0.36 -20.02 9.45 84.03 0.79 -19.22 16 14 H 0.05 2.65 7.94 -2.91 -0.02 2.63 16 15 C -0.07 -4.30 4.67 84.86 0.40 -3.91 16 16 N -0.94 -57.63 12.37 21.65 0.27 -57.36 16 17 Si 1.11 51.63 29.99 68.60 2.06 53.69 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 C 0.16 7.55 4.69 86.27 0.40 7.96 16 22 C -0.09 -3.28 5.82 30.61 0.18 -3.10 16 23 C -0.11 -1.22 4.34 30.68 0.13 -1.09 16 24 C 0.11 0.56 6.39 86.49 0.55 1.12 16 25 N -0.71 -7.41 5.24 -467.30 -2.45 -9.86 16 26 C 0.53 9.54 7.15 87.71 0.63 10.16 16 27 O -0.60 -16.84 17.78 -3.05 -0.05 -16.89 16 28 C -0.12 -1.96 4.65 29.71 0.14 -1.82 16 29 H 0.07 0.57 7.55 -2.38 -0.02 0.55 16 30 H 0.08 0.57 5.89 -2.39 -0.01 0.56 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.41 6.34 6.29 -92.71 -0.58 5.76 16 33 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 1.92 6.75 -2.39 -0.02 1.91 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 1.98 7.92 -2.38 -0.02 1.96 16 39 H 0.25 15.85 6.82 -92.71 -0.63 15.22 16 40 H 0.04 2.33 6.17 -2.39 -0.01 2.32 16 41 H 0.01 0.39 7.99 -2.39 -0.02 0.38 16 42 H 0.07 2.34 8.10 -2.39 -0.02 2.33 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 0.93 8.12 -2.38 -0.02 0.91 16 45 H 0.10 1.06 7.90 -2.39 -0.02 1.04 16 46 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.09 0.16 6.85 -2.39 -0.02 0.14 16 48 H 0.41 3.48 8.80 -92.71 -0.82 2.66 16 49 H 0.11 1.64 7.94 -2.39 -0.02 1.62 16 50 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 Total: -1.00 -77.71 385.47 0.75 -76.96 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.30 Total: 18.77 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.52 Total: -1.11 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -6.42 Total: -115.50 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.10 Total: -32.81 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.06 Total: 53.69 kcal Total: -77.71 0.75 -76.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016679325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.276 kcal (2) G-P(sol) polarization free energy of solvation -77.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds