Wall clock time and date at job start Tue Mar 31 2020 19:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.67264 * 2 1 4 4 O 1.21271 * 120.00187 * 119.99806 * 3 2 1 5 5 N 1.34775 * 119.99438 * 300.00025 * 3 2 1 6 6 C 1.46507 * 119.99590 * 179.97438 * 5 3 2 7 7 H 1.08999 * 115.56601 * 350.68750 * 6 5 3 8 8 C 1.53041 * 117.49930 * 136.39098 * 6 5 3 9 9 C 1.52815 * 117.50205 * 204.97269 * 6 5 3 10 10 C 1.53180 * 117.71585 * 0.14195 * 9 6 5 11 11 C 1.53352 * 108.77165 * 201.11705 * 10 9 6 12 12 N 1.46841 * 108.81294 * 308.69349 * 11 10 9 13 13 C 1.36937 * 120.38086 * 236.92033 * 12 11 10 14 14 H 1.08001 * 120.00243 * 28.87914 * 13 12 11 15 15 C 1.38813 * 120.00262 * 208.88485 * 13 12 11 16 16 N 1.31625 * 119.99353 * 17.85510 * 15 13 12 17 17 Si 1.86793 * 120.00423 * 197.86135 * 15 13 12 18 18 H 1.48503 * 109.46803 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47478 * 119.99832 * 17 15 13 20 20 H 1.48502 * 109.46839 * 239.99629 * 17 15 13 21 21 C 1.46845 * 119.23472 * 56.90139 * 12 11 10 22 22 C 1.53179 * 117.71577 * 144.90731 * 9 6 5 23 23 C 1.53347 * 109.67085 * 120.49825 * 2 1 3 24 24 C 1.52918 * 108.67420 * 52.23758 * 23 2 1 25 25 N 1.45751 * 110.48795 * 50.75603 * 24 23 2 26 26 C 1.33352 * 124.10965 * 340.89673 * 25 24 23 27 27 O 1.21273 * 118.25123 * 182.22939 * 26 25 24 28 28 C 1.50200 * 123.51641 * 2.23097 * 26 25 24 29 29 H 1.09000 * 109.47410 * 60.00317 * 1 2 3 30 30 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47193 * 300.00065 * 1 2 3 32 32 H 0.97001 * 120.00986 * 359.97438 * 5 3 2 33 33 H 1.08993 * 117.50535 * 0.02562 * 8 6 5 34 34 H 1.09002 * 117.50113 * 214.95170 * 8 6 5 35 35 H 1.09007 * 109.58893 * 320.89687 * 10 9 6 36 36 H 1.08992 * 109.58758 * 81.32793 * 10 9 6 37 37 H 1.09001 * 109.58297 * 188.89169 * 11 10 9 38 38 H 1.09007 * 109.58134 * 68.49427 * 11 10 9 39 39 H 0.97006 * 119.99445 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.57844 * 183.29670 * 21 12 11 41 41 H 1.08998 * 109.58474 * 62.89455 * 21 12 11 42 42 H 1.09005 * 109.58535 * 278.66127 * 22 9 6 43 43 H 1.08996 * 109.58971 * 39.08924 * 22 9 6 44 44 H 1.09007 * 109.59900 * 171.99625 * 23 2 1 45 45 H 1.08995 * 109.60181 * 292.31262 * 23 2 1 46 46 H 1.09008 * 109.29778 * 171.06006 * 24 23 2 47 47 H 1.08999 * 109.30186 * 290.43800 * 24 23 2 48 48 H 0.97000 * 117.94768 * 160.92032 * 25 24 23 49 49 H 1.08998 * 109.42669 * 222.31243 * 28 26 25 50 50 H 1.09003 * 109.38931 * 102.56725 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4190 0.0000 4 8 2.7359 1.8133 0.9095 5 7 1.7146 2.2499 -1.0109 6 6 2.2073 3.6297 -1.0106 7 1 2.6924 3.9558 -0.0906 8 6 2.7461 4.1878 -2.3298 9 6 1.3995 4.6676 -1.7887 10 6 0.1338 4.1919 -2.5085 11 6 -0.2127 5.1969 -3.6137 12 7 -0.2374 6.5466 -3.0356 13 6 -1.3617 7.3220 -3.1348 14 1 -2.3349 6.8572 -3.1921 15 6 -1.2507 8.7054 -3.1616 16 7 -0.0945 9.2673 -3.4443 17 14 -2.7419 9.7694 -2.7964 18 1 -3.9119 8.9006 -2.5109 19 1 -2.4615 10.6264 -1.6166 20 1 -3.0378 10.6271 -3.9721 21 6 0.9574 7.0550 -2.3497 22 6 1.3274 6.0876 -1.2188 23 6 2.0462 -0.7328 1.2442 24 6 1.3756 -2.1052 1.3175 25 7 1.5042 -2.8044 0.0452 26 6 1.7818 -2.2046 -1.1130 27 8 1.8238 -2.8849 -2.1161 28 6 2.0453 -0.7316 -1.2419 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.1561 1.9346 -1.7386 33 1 2.7336 3.5287 -3.1978 34 1 3.5855 4.8813 -2.2775 35 1 0.3109 3.2108 -2.9493 36 1 -0.6901 4.1320 -1.7975 37 1 -1.1920 4.9596 -4.0294 38 1 0.5411 5.1499 -4.3997 39 1 -0.0168 10.2341 -3.4627 40 1 0.7481 8.0404 -1.9337 41 1 1.7837 7.1230 -3.0573 42 1 0.5676 6.1300 -0.4384 43 1 2.2965 6.3644 -0.8037 44 1 3.1269 -0.8571 1.1734 45 1 1.8022 -0.1557 2.1360 46 1 1.8484 -2.6957 2.1024 47 1 0.3192 -1.9778 1.5536 48 1 1.3796 -3.7664 0.0405 49 1 1.5354 -0.3480 -2.1257 50 1 3.1175 -0.5632 -1.3425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016679326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:44 Heat of formation + Delta-G solvation = -57.373486 kcal Electronic energy + Delta-G solvation = -29970.073047 eV Core-core repulsion = 25996.964507 eV Total energy + Delta-G solvation = -3973.108541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.12088 -40.81619 -39.77689 -37.72423 -37.07188 -35.15369 -34.22607 -33.19914 -31.64085 -30.69314 -29.93666 -28.84471 -26.25208 -25.83283 -24.44384 -24.03779 -23.01083 -22.19739 -21.34698 -19.80871 -19.41118 -18.80853 -18.23498 -17.70922 -17.41218 -17.04269 -16.76239 -16.42704 -15.94772 -15.75526 -15.73284 -15.39743 -15.15623 -14.92792 -14.76278 -14.55069 -14.31696 -14.13811 -13.79775 -13.64551 -13.28876 -13.11663 -13.03240 -12.88088 -12.77581 -12.60469 -12.52482 -12.44813 -12.23812 -12.00947 -11.98532 -11.90252 -11.78009 -11.39022 -11.36866 -11.23881 -10.79882 -10.54126 -10.46069 -10.06461 -9.66410 -8.61560 -7.85666 -5.31702 1.45712 1.47879 1.48336 1.57618 1.58272 2.00800 2.31124 2.52025 2.94876 3.29097 3.33438 3.44314 3.61676 3.65375 3.72228 3.82166 3.88384 3.96672 3.99748 4.14231 4.14761 4.38399 4.51364 4.54168 4.58348 4.62728 4.68878 4.74132 4.79039 4.85529 4.88832 4.93569 4.96235 5.01190 5.03880 5.10068 5.13171 5.18212 5.27836 5.32440 5.39376 5.50103 5.57138 5.66914 5.78790 5.82698 6.29181 6.42036 6.49027 7.17070 7.17258 7.17963 7.89864 8.40498 9.19463 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002412 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.067613 B =11606.164435 C =11788.123149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C 0.528 3.472 4 O -0.572 6.572 5 N -0.684 5.684 6 C 0.089 3.911 7 H 0.121 0.879 8 C -0.172 4.172 9 C -0.115 4.115 10 C -0.082 4.082 11 C 0.144 3.856 12 N -0.608 5.608 13 C -0.260 4.260 14 H 0.065 0.935 15 C -0.051 4.051 16 N -0.934 5.934 17 Si 0.963 3.037 18 H -0.266 1.266 19 H -0.291 1.291 20 H -0.293 1.293 21 C 0.180 3.820 22 C -0.093 4.093 23 C -0.114 4.114 24 C 0.110 3.890 25 N -0.708 5.708 26 C 0.527 3.473 27 O -0.603 6.603 28 C -0.123 4.123 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.411 0.589 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.016 0.984 39 H 0.249 0.751 40 H 0.053 0.947 41 H -0.002 1.002 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.407 0.593 49 H 0.115 0.885 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -24.058 10.441 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 C 0.316 3.684 4 O -0.451 6.451 5 N -0.334 5.334 6 C -0.018 4.018 7 H 0.139 0.861 8 C -0.211 4.211 9 C -0.116 4.116 10 C -0.121 4.121 11 C 0.019 3.981 12 N -0.331 5.331 13 C -0.390 4.390 14 H 0.083 0.917 15 C -0.247 4.247 16 N -0.580 5.580 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.218 1.218 20 H -0.220 1.220 21 C 0.054 3.946 22 C -0.132 4.132 23 C -0.152 4.152 24 C -0.013 4.013 25 N -0.359 5.359 26 C 0.314 3.686 27 O -0.486 6.486 28 C -0.163 4.163 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.016 0.984 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.109 0.891 48 H 0.244 0.756 49 H 0.133 0.867 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.885 -23.739 10.586 26.281 hybrid contribution -0.681 0.929 -0.440 1.233 sum 3.203 -22.810 10.146 25.169 Atomic orbital electron populations 1.22028 0.90349 1.04206 1.03920 1.20866 0.98779 0.90320 0.97402 1.20761 0.79114 0.87634 0.80939 1.90690 1.39370 1.77944 1.37104 1.45362 1.52324 1.10370 1.25328 1.21629 1.01937 0.81497 0.96713 0.86105 1.23609 0.96996 1.03106 0.97374 1.21790 0.93574 0.94239 1.02047 1.21442 0.95091 0.98054 0.97528 1.21009 0.98579 0.84896 0.93651 1.44242 1.12355 1.13430 1.63091 1.19538 0.86878 0.88449 1.44162 0.91685 1.25780 0.99225 0.98646 1.01024 1.70195 1.25907 1.09365 1.52544 0.85272 0.79880 0.78740 0.76960 1.19032 1.21805 1.22031 1.20527 0.87011 0.95753 0.91265 1.21614 1.00180 0.93431 0.98001 1.21765 1.01018 0.95224 0.97166 1.21647 1.02599 0.92474 0.84573 1.45475 1.70334 1.12366 1.07710 1.20067 0.75154 0.90558 0.82805 1.90772 1.54609 1.66025 1.37158 1.21741 1.04686 0.90748 0.99082 0.91103 0.89849 0.90896 0.75091 0.87334 0.88308 0.89810 0.92229 0.92748 0.96638 0.94182 0.92887 0.98398 0.93231 0.91622 0.91045 0.88607 0.87469 0.89092 0.75637 0.86697 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.72 71.98 0.56 -0.98 16 2 C -0.07 -0.92 0.63 -52.79 -0.03 -0.96 16 3 C 0.53 10.74 6.47 87.66 0.57 11.30 16 4 O -0.57 -16.05 15.46 -3.00 -0.05 -16.09 16 5 N -0.68 -13.47 5.16 -442.76 -2.28 -15.75 16 6 C 0.09 2.22 6.14 44.94 0.28 2.50 16 7 H 0.12 3.42 7.40 -2.39 -0.02 3.40 16 8 C -0.17 -4.38 9.86 30.56 0.30 -4.07 16 9 C -0.11 -3.42 1.94 -52.17 -0.10 -3.52 16 10 C -0.08 -2.41 5.37 30.77 0.17 -2.25 16 11 C 0.14 5.62 6.52 86.43 0.56 6.19 16 12 N -0.61 -29.83 2.94 -698.89 -2.05 -31.88 16 13 C -0.26 -14.12 9.54 84.03 0.80 -13.32 16 14 H 0.07 3.45 7.89 -2.91 -0.02 3.42 16 15 C -0.05 -2.86 4.88 84.86 0.41 -2.44 16 16 N -0.93 -55.18 11.23 21.65 0.24 -54.94 16 17 Si 0.96 44.67 29.59 68.60 2.03 46.70 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 C 0.18 8.57 5.40 86.43 0.47 9.04 16 22 C -0.09 -3.43 5.83 30.77 0.18 -3.25 16 23 C -0.11 -1.23 4.35 30.68 0.13 -1.10 16 24 C 0.11 0.60 6.38 86.49 0.55 1.15 16 25 N -0.71 -7.11 5.24 -467.30 -2.45 -9.56 16 26 C 0.53 8.88 7.15 87.72 0.63 9.51 16 27 O -0.60 -15.82 17.78 -3.01 -0.05 -15.87 16 28 C -0.12 -1.71 4.64 29.71 0.14 -1.57 16 29 H 0.07 0.71 7.58 -2.39 -0.02 0.70 16 30 H 0.08 0.69 5.90 -2.39 -0.01 0.68 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.41 6.36 6.28 -92.71 -0.58 5.78 16 33 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.10 2.54 8.14 -2.39 -0.02 2.53 16 35 H 0.08 1.81 6.75 -2.38 -0.02 1.80 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 2.08 7.92 -2.39 -0.02 2.06 16 38 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 40 H 0.05 2.90 5.93 -2.39 -0.01 2.88 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 44 H 0.07 0.92 8.12 -2.38 -0.02 0.90 16 45 H 0.10 1.12 7.89 -2.39 -0.02 1.10 16 46 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 47 H 0.09 0.26 6.86 -2.39 -0.02 0.24 16 48 H 0.41 3.31 8.80 -92.71 -0.82 2.50 16 49 H 0.11 1.43 7.91 -2.39 -0.02 1.41 16 50 H 0.11 1.52 8.09 -2.39 -0.02 1.50 16 Total: -1.00 -74.43 386.42 0.56 -73.87 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.44 Total: 17.31 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.61 Total: 6.23 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -6.54 Total: -112.13 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.10 Total: -31.97 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.43 0.56 -73.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016679326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.497 kcal (2) G-P(sol) polarization free energy of solvation -74.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds