Wall clock time and date at job start Tue Mar 31 2020 19:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.60574 * 2 1 4 4 O 1.21273 * 120.00301 * 115.04226 * 3 2 1 5 5 N 1.34774 * 119.99530 * 295.04258 * 3 2 1 6 6 C 1.46495 * 119.99782 * 180.02562 * 5 3 2 7 7 H 1.09003 * 115.55684 * 9.31168 * 6 5 3 8 8 C 1.53038 * 117.50201 * 223.58191 * 6 5 3 9 9 C 1.52818 * 117.50372 * 154.99895 * 6 5 3 10 10 C 1.53182 * 117.71437 * 359.86125 * 9 6 5 11 11 C 1.53351 * 108.77442 * 158.88850 * 10 9 6 12 12 N 1.46841 * 108.81184 * 51.30740 * 11 10 9 13 13 C 1.36934 * 120.38535 * 123.08018 * 12 11 10 14 14 H 1.08000 * 120.00238 * 209.41887 * 13 12 11 15 15 C 1.38814 * 119.99945 * 29.41397 * 13 12 11 16 16 N 1.31622 * 120.00170 * 16.79848 * 15 13 12 17 17 Si 1.86798 * 120.00112 * 196.79423 * 15 13 12 18 18 H 1.48495 * 109.47258 * 90.00296 * 17 15 13 19 19 H 1.48501 * 109.47413 * 210.00397 * 17 15 13 20 20 H 1.48502 * 109.47259 * 330.00005 * 17 15 13 21 21 C 1.46846 * 119.23082 * 303.09393 * 12 11 10 22 22 C 1.53180 * 117.71556 * 215.09895 * 9 6 5 23 23 C 1.53169 * 109.76127 * 239.54843 * 2 1 3 24 24 C 1.53080 * 108.51255 * 172.59428 * 23 2 1 25 25 C 1.50169 * 109.81876 * 48.92930 * 24 23 2 26 26 O 1.21285 * 118.24560 * 162.46105 * 25 24 23 27 27 N 1.33353 * 123.51617 * 342.48610 * 25 24 23 28 28 C 1.45754 * 124.10006 * 2.17198 * 27 25 24 29 29 H 1.09004 * 109.47133 * 299.68270 * 1 2 3 30 30 H 1.09002 * 109.46561 * 59.67534 * 1 2 3 31 31 H 1.08993 * 109.47694 * 179.67977 * 1 2 3 32 32 H 0.96999 * 120.00499 * 359.97438 * 5 3 2 33 33 H 1.08995 * 117.50402 * 359.97438 * 8 6 5 34 34 H 1.09002 * 117.50084 * 145.04172 * 8 6 5 35 35 H 1.08999 * 109.58690 * 278.67885 * 10 9 6 36 36 H 1.09005 * 109.58694 * 39.10224 * 10 9 6 37 37 H 1.08995 * 109.57837 * 291.50887 * 11 10 9 38 38 H 1.08998 * 109.58300 * 171.10480 * 11 10 9 39 39 H 0.96995 * 120.00347 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.58281 * 297.10954 * 21 12 11 41 41 H 1.09008 * 109.57557 * 176.70939 * 21 12 11 42 42 H 1.09004 * 109.58733 * 320.89352 * 22 9 6 43 43 H 1.08997 * 109.59037 * 81.32953 * 22 9 6 44 44 H 1.08993 * 109.56920 * 52.86825 * 23 2 1 45 45 H 1.09001 * 109.69264 * 292.38876 * 23 2 1 46 46 H 1.09000 * 109.39455 * 288.84238 * 24 23 2 47 47 H 1.08998 * 109.39843 * 169.01357 * 24 23 2 48 48 H 0.96999 * 117.95107 * 182.20390 * 27 25 24 49 49 H 1.08999 * 109.29739 * 101.26736 * 28 27 25 50 50 H 1.09001 * 109.30177 * 220.63549 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0357 1.4197 0.0000 4 8 2.6579 1.8418 0.9515 5 7 1.7963 2.2202 -1.0575 6 6 2.2883 3.6000 -1.0578 7 1 2.9692 3.8567 -0.2462 8 6 1.3349 4.6901 -1.5524 9 6 2.5241 4.2649 -2.4134 10 6 2.2325 3.4409 -3.6714 11 6 2.0170 4.3984 -4.8497 12 7 3.1449 5.3368 -4.9096 13 6 3.8992 5.4413 -6.0476 14 1 4.9401 5.7216 -5.9816 15 6 3.3261 5.1868 -7.2860 16 7 2.0163 5.1720 -7.4145 17 14 4.4138 4.8655 -8.7703 18 1 4.6894 3.4102 -8.8763 19 1 3.7228 5.3293 -10.0001 20 1 5.6941 5.6017 -8.6145 21 6 3.4546 6.1617 -3.7348 22 6 3.6994 5.2399 -2.5340 23 6 2.0479 -0.7306 -1.2426 24 6 3.5669 -0.5544 -1.3122 25 6 4.1788 -0.8802 0.0199 26 8 5.3692 -1.1081 0.0644 27 7 3.4834 -0.9329 1.1565 28 6 2.0430 -0.7273 1.2435 29 1 -0.3633 0.5089 0.8928 30 1 -0.3632 0.5189 -0.8871 31 1 -0.3634 -1.0275 -0.0057 32 1 1.2989 1.8825 -1.8187 33 1 0.3419 4.3805 -1.8780 34 1 1.3883 5.6642 -1.0660 35 1 3.0773 2.7855 -3.8829 36 1 1.3338 2.8437 -3.5168 37 1 1.0889 4.9515 -4.7058 38 1 1.9655 3.8296 -5.7780 39 1 1.6158 4.9939 -8.2798 40 1 2.6155 6.8240 -3.5220 41 1 4.3491 6.7534 -3.9295 42 1 3.7741 5.8364 -1.6247 43 1 4.6234 4.6816 -2.6842 44 1 1.5879 -0.3051 -2.1345 45 1 1.8042 -1.7907 -1.1737 46 1 3.8000 0.4774 -1.5753 47 1 3.9744 -1.2225 -2.0710 48 1 3.9664 -1.1192 1.9768 49 1 1.5456 -1.6936 1.3266 50 1 1.8168 -0.1319 2.1281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016785052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:46 Heat of formation + Delta-G solvation = -35.367842 kcal Electronic energy + Delta-G solvation = -30668.049209 eV Core-core repulsion = 26695.894905 eV Total energy + Delta-G solvation = -3972.154304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.37621 -39.56655 -38.54017 -36.60352 -35.52746 -34.11297 -32.78909 -31.68717 -31.38739 -30.15123 -28.27219 -26.64395 -24.72916 -24.38170 -24.08050 -22.50152 -21.90436 -21.07981 -20.46755 -19.16491 -18.21142 -17.41230 -16.76353 -16.70465 -16.27007 -16.00112 -15.81137 -15.07264 -14.79127 -14.51562 -14.37519 -14.10095 -13.73985 -13.62000 -13.45023 -13.38748 -13.05147 -12.98878 -12.81537 -12.65352 -12.54467 -12.32440 -11.77043 -11.73053 -11.57119 -11.54553 -11.39769 -11.19191 -10.98419 -10.76308 -10.52094 -10.31472 -10.02400 -9.91407 -9.86585 -9.73760 -9.62154 -9.40158 -9.24556 -8.52577 -8.47744 -6.66096 -5.81544 -3.25500 2.42790 2.54951 2.93060 3.12106 3.36247 3.43630 3.44865 3.97076 4.09150 4.12380 4.28821 4.41008 4.47874 4.61147 4.89312 4.93650 4.98317 5.08322 5.09238 5.12596 5.17402 5.22900 5.32149 5.36904 5.47062 5.49979 5.52106 5.60274 5.64748 5.66160 5.83187 6.00419 6.05445 6.07486 6.24511 6.40241 6.51116 6.53088 6.59729 6.60663 6.67092 6.80268 6.97210 7.15486 7.29650 7.40779 7.61148 7.77871 8.08197 8.09179 8.44318 9.19688 9.82685 10.39353 11.26155 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003126 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.551677 B = 8954.773785 C = 9553.979235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.524 3.476 4 O -0.534 6.534 5 N -0.691 5.691 6 C 0.067 3.933 7 H 0.130 0.870 8 C -0.181 4.181 9 C -0.096 4.096 10 C -0.104 4.104 11 C 0.174 3.826 12 N -0.589 5.589 13 C -0.253 4.253 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.150 3.850 22 C -0.099 4.099 23 C -0.113 4.113 24 C -0.144 4.144 25 C 0.523 3.477 26 O -0.559 6.559 27 N -0.711 5.711 28 C 0.135 3.865 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.401 0.599 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.017 0.983 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.019 0.981 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.400 0.600 49 H 0.074 0.926 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 -12.156 15.761 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C 0.309 3.691 4 O -0.410 6.410 5 N -0.340 5.340 6 C -0.038 4.038 7 H 0.148 0.852 8 C -0.220 4.220 9 C -0.097 4.097 10 C -0.144 4.144 11 C 0.048 3.952 12 N -0.311 5.311 13 C -0.382 4.382 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.547 5.547 17 Si 0.731 3.269 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.023 3.977 22 C -0.138 4.138 23 C -0.151 4.151 24 C -0.183 4.183 25 C 0.310 3.690 26 O -0.438 6.438 27 N -0.362 5.362 28 C 0.010 3.990 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.237 0.763 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.236 0.764 49 H 0.092 0.908 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.400 -11.929 16.092 21.028 hybrid contribution 0.188 -0.257 -0.830 0.889 sum -6.211 -12.186 15.262 20.494 Atomic orbital electron populations 1.21784 0.90717 1.03569 1.03524 1.21190 0.98379 0.93056 0.97644 1.20229 0.79500 0.86814 0.82531 1.90710 1.40136 1.75621 1.34553 1.45388 1.56627 1.11998 1.20005 1.21894 1.01742 0.79860 1.00306 0.85231 1.23519 0.95622 0.98835 1.04005 1.21955 0.97314 0.99515 0.90942 1.21816 0.99233 0.98096 0.95207 1.20744 0.88979 0.90168 0.95324 1.43962 1.34901 1.41745 1.10536 1.19224 0.91858 1.43196 0.83972 0.91750 1.25052 0.95442 1.01585 0.97435 1.70020 1.08565 1.52584 1.23550 0.86304 0.79959 0.78199 0.82406 1.21426 1.21777 1.20401 1.20858 0.98122 0.91788 0.86942 1.21698 0.95912 0.96955 0.99252 1.21772 0.94839 1.01664 0.96826 1.21742 0.95729 1.05556 0.95323 1.20070 0.86810 0.75859 0.86270 1.90760 1.15750 1.50120 1.87142 1.45254 1.08826 1.72168 1.09983 1.21213 0.80594 0.99544 0.97656 0.91363 0.91142 0.90714 0.76280 0.88925 0.88510 0.92041 0.93898 0.96442 0.89170 0.93663 0.96263 0.92659 0.92894 0.91809 0.89579 0.89596 0.87807 0.87391 0.76418 0.90770 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.45 37.16 0.31 -0.40 16 2 C -0.10 -0.76 0.65 -155.61 -0.10 -0.86 16 3 C 0.52 6.04 4.72 -10.98 -0.05 5.99 16 4 O -0.53 -8.16 15.14 5.56 0.08 -8.07 16 5 N -0.69 -7.83 5.12 -53.88 -0.28 -8.11 16 6 C 0.07 0.92 6.14 -68.01 -0.42 0.50 16 7 H 0.13 1.95 7.40 -51.93 -0.38 1.57 16 8 C -0.18 -2.46 9.86 -26.79 -0.26 -2.73 16 9 C -0.10 -1.50 1.94 -154.49 -0.30 -1.80 16 10 C -0.10 -1.78 5.37 -26.46 -0.14 -1.93 16 11 C 0.17 3.89 5.39 -3.67 -0.02 3.87 16 12 N -0.59 -14.25 2.93 -172.26 -0.51 -14.76 16 13 C -0.25 -6.79 9.54 -15.06 -0.14 -6.93 16 14 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 15 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 16 N -0.90 -25.43 11.20 55.49 0.62 -24.81 16 17 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.15 3.05 6.52 -3.67 -0.02 3.03 16 22 C -0.10 -1.68 5.83 -26.45 -0.15 -1.83 16 23 C -0.11 -0.80 4.73 -26.60 -0.13 -0.93 16 24 C -0.14 -1.52 5.51 -28.10 -0.15 -1.67 16 25 C 0.52 6.85 7.44 -11.87 -0.09 6.77 16 26 O -0.56 -9.78 17.78 5.55 0.10 -9.68 16 27 N -0.71 -7.26 5.09 -61.39 -0.31 -7.57 16 28 C 0.14 1.00 5.40 -4.49 -0.02 0.97 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.35 7.93 -51.93 -0.41 -0.06 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.40 3.89 6.23 -40.82 -0.25 3.64 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.61 6.75 -51.93 -0.35 0.26 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 2.28 5.94 -51.93 -0.31 1.97 16 39 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 1.12 7.92 -51.92 -0.41 0.71 16 42 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.09 0.52 7.59 -51.93 -0.39 0.12 16 45 H 0.09 0.46 8.13 -51.93 -0.42 0.04 16 46 H 0.10 1.28 7.38 -51.93 -0.38 0.90 16 47 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.40 3.82 8.80 -40.82 -0.36 3.46 16 49 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 50 H 0.09 0.66 7.73 -51.93 -0.40 0.26 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -33.88 388.07 -9.53 -43.41 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.28 Total: 5.37 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.78 Total: 2.06 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.47 Total: -55.25 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.18 Total: -17.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.88 -9.53 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016785052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.040 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds