Wall clock time and date at job start Tue Mar 31 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.60574 * 2 1 4 4 O 1.21273 * 120.00301 * 115.04226 * 3 2 1 5 5 N 1.34774 * 119.99530 * 295.04258 * 3 2 1 6 6 C 1.46495 * 119.99782 * 180.02562 * 5 3 2 7 7 H 1.09003 * 115.55684 * 9.31168 * 6 5 3 8 8 C 1.53038 * 117.50201 * 223.58191 * 6 5 3 9 9 C 1.52818 * 117.50372 * 154.99895 * 6 5 3 10 10 C 1.53182 * 117.71437 * 359.86125 * 9 6 5 11 11 C 1.53351 * 108.77442 * 158.88850 * 10 9 6 12 12 N 1.46841 * 108.81184 * 51.30740 * 11 10 9 13 13 C 1.36934 * 120.38535 * 123.08018 * 12 11 10 14 14 H 1.08000 * 120.00238 * 209.41887 * 13 12 11 15 15 C 1.38814 * 119.99945 * 29.41397 * 13 12 11 16 16 N 1.31622 * 120.00170 * 16.79848 * 15 13 12 17 17 Si 1.86798 * 120.00112 * 196.79423 * 15 13 12 18 18 H 1.48495 * 109.47258 * 90.00296 * 17 15 13 19 19 H 1.48501 * 109.47413 * 210.00397 * 17 15 13 20 20 H 1.48502 * 109.47259 * 330.00005 * 17 15 13 21 21 C 1.46846 * 119.23082 * 303.09393 * 12 11 10 22 22 C 1.53180 * 117.71556 * 215.09895 * 9 6 5 23 23 C 1.53169 * 109.76127 * 239.54843 * 2 1 3 24 24 C 1.53080 * 108.51255 * 172.59428 * 23 2 1 25 25 C 1.50169 * 109.81876 * 48.92930 * 24 23 2 26 26 O 1.21285 * 118.24560 * 162.46105 * 25 24 23 27 27 N 1.33353 * 123.51617 * 342.48610 * 25 24 23 28 28 C 1.45754 * 124.10006 * 2.17198 * 27 25 24 29 29 H 1.09004 * 109.47133 * 299.68270 * 1 2 3 30 30 H 1.09002 * 109.46561 * 59.67534 * 1 2 3 31 31 H 1.08993 * 109.47694 * 179.67977 * 1 2 3 32 32 H 0.96999 * 120.00499 * 359.97438 * 5 3 2 33 33 H 1.08995 * 117.50402 * 359.97438 * 8 6 5 34 34 H 1.09002 * 117.50084 * 145.04172 * 8 6 5 35 35 H 1.08999 * 109.58690 * 278.67885 * 10 9 6 36 36 H 1.09005 * 109.58694 * 39.10224 * 10 9 6 37 37 H 1.08995 * 109.57837 * 291.50887 * 11 10 9 38 38 H 1.08998 * 109.58300 * 171.10480 * 11 10 9 39 39 H 0.96995 * 120.00347 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.58281 * 297.10954 * 21 12 11 41 41 H 1.09008 * 109.57557 * 176.70939 * 21 12 11 42 42 H 1.09004 * 109.58733 * 320.89352 * 22 9 6 43 43 H 1.08997 * 109.59037 * 81.32953 * 22 9 6 44 44 H 1.08993 * 109.56920 * 52.86825 * 23 2 1 45 45 H 1.09001 * 109.69264 * 292.38876 * 23 2 1 46 46 H 1.09000 * 109.39455 * 288.84238 * 24 23 2 47 47 H 1.08998 * 109.39843 * 169.01357 * 24 23 2 48 48 H 0.96999 * 117.95107 * 182.20390 * 27 25 24 49 49 H 1.08999 * 109.29739 * 101.26736 * 28 27 25 50 50 H 1.09001 * 109.30177 * 220.63549 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0357 1.4197 0.0000 4 8 2.6579 1.8418 0.9515 5 7 1.7963 2.2202 -1.0575 6 6 2.2883 3.6000 -1.0578 7 1 2.9692 3.8567 -0.2462 8 6 1.3349 4.6901 -1.5524 9 6 2.5241 4.2649 -2.4134 10 6 2.2325 3.4409 -3.6714 11 6 2.0170 4.3984 -4.8497 12 7 3.1449 5.3368 -4.9096 13 6 3.8992 5.4413 -6.0476 14 1 4.9401 5.7216 -5.9816 15 6 3.3261 5.1868 -7.2860 16 7 2.0163 5.1720 -7.4145 17 14 4.4138 4.8655 -8.7703 18 1 4.6894 3.4102 -8.8763 19 1 3.7228 5.3293 -10.0001 20 1 5.6941 5.6017 -8.6145 21 6 3.4546 6.1617 -3.7348 22 6 3.6994 5.2399 -2.5340 23 6 2.0479 -0.7306 -1.2426 24 6 3.5669 -0.5544 -1.3122 25 6 4.1788 -0.8802 0.0199 26 8 5.3692 -1.1081 0.0644 27 7 3.4834 -0.9329 1.1565 28 6 2.0430 -0.7273 1.2435 29 1 -0.3633 0.5089 0.8928 30 1 -0.3632 0.5189 -0.8871 31 1 -0.3634 -1.0275 -0.0057 32 1 1.2989 1.8825 -1.8187 33 1 0.3419 4.3805 -1.8780 34 1 1.3883 5.6642 -1.0660 35 1 3.0773 2.7855 -3.8829 36 1 1.3338 2.8437 -3.5168 37 1 1.0889 4.9515 -4.7058 38 1 1.9655 3.8296 -5.7780 39 1 1.6158 4.9939 -8.2798 40 1 2.6155 6.8240 -3.5220 41 1 4.3491 6.7534 -3.9295 42 1 3.7741 5.8364 -1.6247 43 1 4.6234 4.6816 -2.6842 44 1 1.5879 -0.3051 -2.1345 45 1 1.8042 -1.7907 -1.1737 46 1 3.8000 0.4774 -1.5753 47 1 3.9744 -1.2225 -2.0710 48 1 3.9664 -1.1192 1.9768 49 1 1.5456 -1.6936 1.3266 50 1 1.8168 -0.1319 2.1281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016785052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:45 Heat of formation + Delta-G solvation = -59.155367 kcal Electronic energy + Delta-G solvation = -30669.080714 eV Core-core repulsion = 26695.894905 eV Total energy + Delta-G solvation = -3973.185809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21393 -40.68510 -39.73187 -37.58707 -37.02649 -35.06634 -34.08721 -32.97563 -32.36742 -31.73953 -29.89721 -27.21094 -26.24580 -25.39877 -24.91471 -24.03095 -23.07947 -22.40502 -21.56715 -20.09676 -19.72709 -18.33520 -18.27347 -17.62670 -17.22916 -17.04963 -16.78604 -16.72476 -15.92988 -15.66571 -15.48964 -15.29064 -15.06054 -14.96009 -14.67961 -14.42538 -14.24086 -14.06398 -13.76013 -13.50162 -13.45346 -13.32297 -13.15496 -13.02257 -12.90726 -12.59569 -12.52237 -12.42648 -12.30501 -12.21778 -11.97509 -11.80264 -11.78227 -11.36402 -11.25310 -10.88549 -10.85445 -10.63464 -10.47178 -10.08576 -9.64697 -8.60216 -7.85654 -5.32477 1.46818 1.48638 1.53713 1.56760 1.57246 2.04490 2.33078 2.51884 2.95580 3.28914 3.35115 3.44616 3.60655 3.65199 3.69988 3.83180 3.86924 3.92779 4.00756 4.13791 4.30963 4.35673 4.52708 4.60043 4.61351 4.69670 4.70996 4.73779 4.83300 4.86729 4.90182 4.92893 4.96150 4.98471 5.00328 5.08958 5.11554 5.22035 5.30915 5.34098 5.37207 5.51766 5.55585 5.66718 5.78160 5.81412 6.29590 6.42546 6.51514 7.15368 7.18328 7.20822 7.89755 8.40236 9.18874 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003126 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.551677 B = 8954.773785 C = 9553.979235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 C 0.520 3.480 4 O -0.576 6.576 5 N -0.685 5.685 6 C 0.086 3.914 7 H 0.117 0.883 8 C -0.166 4.166 9 C -0.118 4.118 10 C -0.086 4.086 11 C 0.180 3.820 12 N -0.609 5.609 13 C -0.266 4.266 14 H 0.059 0.941 15 C -0.043 4.043 16 N -0.929 5.929 17 Si 0.961 3.039 18 H -0.284 1.284 19 H -0.293 1.293 20 H -0.274 1.274 21 C 0.147 3.853 22 C -0.089 4.089 23 C -0.107 4.107 24 C -0.144 4.144 25 C 0.514 3.486 26 O -0.617 6.617 27 N -0.704 5.704 28 C 0.128 3.872 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.412 0.588 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.001 0.999 38 H 0.056 0.944 39 H 0.251 0.749 40 H 0.019 0.981 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.401 0.599 49 H 0.115 0.885 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -13.793 16.809 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C 0.307 3.693 4 O -0.455 6.455 5 N -0.335 5.335 6 C -0.021 4.021 7 H 0.135 0.865 8 C -0.204 4.204 9 C -0.120 4.120 10 C -0.126 4.126 11 C 0.054 3.946 12 N -0.332 5.332 13 C -0.396 4.396 14 H 0.076 0.924 15 C -0.239 4.239 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.199 1.199 21 C 0.022 3.978 22 C -0.128 4.128 23 C -0.144 4.144 24 C -0.183 4.183 25 C 0.302 3.698 26 O -0.500 6.500 27 N -0.352 5.352 28 C 0.004 3.996 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.249 0.751 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.133 0.867 46 H 0.100 0.900 47 H 0.131 0.869 48 H 0.237 0.763 49 H 0.133 0.867 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.453 -13.570 17.169 23.460 hybrid contribution 0.809 0.316 -1.076 1.382 sum -7.644 -13.254 16.093 22.206 Atomic orbital electron populations 1.21829 0.88010 1.05591 1.03794 1.21241 1.00268 0.89967 0.98016 1.21021 0.78437 0.88223 0.81576 1.90698 1.41940 1.76741 1.36080 1.45336 1.56432 1.11120 1.20585 1.21607 1.01317 0.81305 0.97851 0.86500 1.23591 0.95343 0.99271 1.02193 1.21798 0.98314 1.00482 0.91364 1.21530 1.00257 0.97038 0.93733 1.20570 0.87803 0.90207 0.95993 1.44227 1.35051 1.43043 1.10853 1.19475 0.92052 1.42779 0.85302 0.92365 1.25704 0.96544 1.01950 0.99712 1.70152 1.09858 1.53708 1.23809 0.85363 0.78492 0.77962 0.79203 1.21104 1.21963 1.19863 1.20953 0.97642 0.92172 0.87065 1.21520 0.96042 0.96764 0.98465 1.21852 0.91816 1.03562 0.97207 1.21738 0.98512 1.04170 0.93926 1.20571 0.86275 0.75257 0.87725 1.90724 1.18196 1.53025 1.88084 1.45338 1.10234 1.70385 1.09279 1.21560 0.78808 1.01630 0.97593 0.91526 0.90543 0.87848 0.75051 0.87631 0.87657 0.93316 0.90537 0.98124 0.92525 0.94016 0.96330 0.93364 0.90464 0.93267 0.87854 0.86697 0.90002 0.86916 0.76343 0.86732 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 8.45 71.98 0.61 -0.13 16 2 C -0.09 -1.08 0.65 -52.90 -0.03 -1.11 16 3 C 0.52 10.89 4.72 87.66 0.41 11.30 16 4 O -0.58 -17.00 15.14 -3.01 -0.05 -17.05 16 5 N -0.68 -13.88 5.12 -442.78 -2.27 -16.15 16 6 C 0.09 2.18 6.14 44.94 0.28 2.45 16 7 H 0.12 3.38 7.40 -2.39 -0.02 3.36 16 8 C -0.17 -4.07 9.86 30.56 0.30 -3.77 16 9 C -0.12 -3.54 1.94 -52.17 -0.10 -3.64 16 10 C -0.09 -2.88 5.37 30.77 0.17 -2.72 16 11 C 0.18 8.15 5.39 86.43 0.47 8.62 16 12 N -0.61 -30.03 2.93 -698.90 -2.05 -32.08 16 13 C -0.27 -14.60 9.54 84.03 0.80 -13.79 16 14 H 0.06 3.19 7.88 -2.91 -0.02 3.17 16 15 C -0.04 -2.38 4.91 84.86 0.42 -1.96 16 16 N -0.93 -53.48 11.20 21.65 0.24 -53.24 16 17 Si 0.96 44.50 29.59 68.60 2.03 46.53 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 C 0.15 6.07 6.52 86.43 0.56 6.64 16 22 C -0.09 -2.98 5.83 30.77 0.18 -2.80 16 23 C -0.11 -1.12 4.73 30.68 0.15 -0.98 16 24 C -0.14 -2.86 5.51 29.71 0.16 -2.70 16 25 C 0.51 13.30 7.44 87.71 0.65 13.95 16 26 O -0.62 -22.29 17.78 -3.05 -0.05 -22.34 16 27 N -0.70 -13.43 5.09 -467.32 -2.38 -15.81 16 28 C 0.13 1.48 5.40 86.49 0.47 1.95 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 0.38 7.93 -2.39 -0.02 0.36 16 31 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.41 6.61 6.23 -92.71 -0.58 6.03 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.00 6.75 -2.38 -0.02 1.98 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.06 2.94 5.94 -2.39 -0.01 2.92 16 39 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.05 2.00 7.92 -2.38 -0.02 1.98 16 42 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.10 0.79 7.59 -2.39 -0.02 0.77 16 45 H 0.11 0.64 8.13 -2.39 -0.02 0.62 16 46 H 0.08 2.00 7.38 -2.39 -0.02 1.98 16 47 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.40 7.41 8.80 -92.71 -0.82 6.59 16 49 H 0.11 0.51 8.12 -2.39 -0.02 0.49 16 50 H 0.09 1.08 7.73 -2.39 -0.02 1.06 16 Total: -1.00 -77.82 388.07 0.52 -77.30 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.44 Total: 21.53 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.49 Total: 11.31 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -6.46 Total: -117.29 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.10 Total: -39.39 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -77.82 0.52 -77.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016785052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.148 kcal (2) G-P(sol) polarization free energy of solvation -77.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds