Wall clock time and date at job start Tue Mar 31 2020 19:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.60226 * 2 1 4 4 O 1.21285 * 120.00163 * 120.00334 * 3 2 1 5 5 N 1.34778 * 120.00303 * 300.00245 * 3 2 1 6 6 C 1.46500 * 120.00191 * 179.97438 * 5 3 2 7 7 H 1.09005 * 115.56643 * 350.70847 * 6 5 3 8 8 C 1.53039 * 117.50408 * 136.41309 * 6 5 3 9 9 C 1.52818 * 117.50367 * 204.99916 * 6 5 3 10 10 C 1.53188 * 117.71045 * 0.13927 * 9 6 5 11 11 C 1.53355 * 108.76445 * 201.11506 * 10 9 6 12 12 N 1.46832 * 108.81588 * 308.69340 * 11 10 9 13 13 C 1.36940 * 120.38456 * 236.88104 * 12 11 10 14 14 H 1.08001 * 119.99486 * 28.91593 * 13 12 11 15 15 C 1.38809 * 120.00346 * 208.92595 * 13 12 11 16 16 N 1.31619 * 119.99881 * 17.83501 * 15 13 12 17 17 Si 1.86805 * 119.99983 * 197.84109 * 15 13 12 18 18 H 1.48502 * 109.46993 * 89.99503 * 17 15 13 19 19 H 1.48501 * 109.46820 * 209.99388 * 17 15 13 20 20 H 1.48495 * 109.46864 * 329.99594 * 17 15 13 21 21 C 1.46852 * 119.23691 * 56.90110 * 12 11 10 22 22 C 1.53178 * 117.71576 * 144.90205 * 9 6 5 23 23 C 1.53345 * 109.60592 * 120.32582 * 2 1 3 24 24 C 1.53066 * 108.42338 * 52.38957 * 23 2 1 25 25 C 1.50175 * 109.89190 * 48.90018 * 24 23 2 26 26 O 1.21278 * 118.24704 * 162.39496 * 25 24 23 27 27 N 1.33355 * 123.51032 * 342.41898 * 25 24 23 28 28 C 1.45813 * 124.16450 * 2.04265 * 27 25 24 29 29 H 1.09003 * 109.46617 * 59.99768 * 1 2 3 30 30 H 1.08991 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47147 * 300.00126 * 1 2 3 32 32 H 0.97000 * 119.99525 * 359.97438 * 5 3 2 33 33 H 1.09003 * 117.49856 * 0.02562 * 8 6 5 34 34 H 1.08992 * 117.52940 * 214.94697 * 8 6 5 35 35 H 1.08998 * 109.58527 * 320.89638 * 10 9 6 36 36 H 1.08999 * 109.58779 * 81.32884 * 10 9 6 37 37 H 1.08999 * 109.57351 * 188.89443 * 11 10 9 38 38 H 1.08997 * 109.57794 * 68.49380 * 11 10 9 39 39 H 0.97001 * 120.00079 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.57921 * 183.29122 * 21 12 11 41 41 H 1.09001 * 109.57570 * 62.89640 * 21 12 11 42 42 H 1.08997 * 109.58633 * 278.66569 * 22 9 6 43 43 H 1.08999 * 109.58928 * 39.09324 * 22 9 6 44 44 H 1.09002 * 109.67543 * 172.12414 * 23 2 1 45 45 H 1.09001 * 109.66932 * 292.62266 * 23 2 1 46 46 H 1.08996 * 109.40171 * 169.02858 * 24 23 2 47 47 H 1.08998 * 109.39939 * 288.77376 * 24 23 2 48 48 H 0.96997 * 117.94581 * 182.21761 * 27 25 24 49 49 H 1.09008 * 109.45782 * 220.85601 * 28 27 25 50 50 H 1.09000 * 109.18014 * 101.46441 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.7338 1.8148 0.9096 5 7 1.7119 2.2504 -1.0108 6 6 2.2029 3.6306 -1.0105 7 1 2.6880 3.9572 -0.0905 8 6 2.7406 4.1898 -2.3297 9 6 1.3936 4.6678 -1.7880 10 6 0.1281 4.1906 -2.5073 11 6 -0.2201 5.1955 -3.6121 12 7 -0.2462 6.5449 -3.0338 13 6 -1.3713 7.3193 -3.1329 14 1 -2.3440 6.8536 -3.1901 15 6 -1.2615 8.7028 -3.1602 16 7 -0.1058 9.2657 -3.4429 17 14 -2.7538 9.7656 -2.7956 18 1 -2.8167 10.0475 -1.3390 19 1 -2.6454 11.0442 -3.5431 20 1 -3.9855 9.0499 -3.2149 21 6 0.9482 7.0547 -2.3482 22 6 1.3199 6.0875 -1.2177 23 6 2.0445 -0.7294 1.2469 24 6 1.3720 -2.1026 1.3161 25 6 1.4774 -2.7908 -0.0146 26 8 1.2963 -3.9892 -0.0569 27 7 1.7600 -2.1548 -1.1521 28 6 2.0431 -0.7273 -1.2435 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.1538 1.9343 -1.7384 33 1 2.7285 3.5307 -3.1978 34 1 3.5790 4.8843 -2.2780 35 1 0.3063 3.2098 -2.9483 36 1 -0.6956 4.1295 -1.7960 37 1 -1.1993 4.9570 -4.0274 38 1 0.5334 5.1496 -4.3983 39 1 -0.0289 10.2325 -3.4616 40 1 0.7379 8.0398 -1.9319 41 1 1.7741 7.1239 -3.0562 42 1 0.5605 6.1288 -0.4370 43 1 2.2888 6.3654 -0.8029 44 1 3.1254 -0.8531 1.1798 45 1 1.7957 -0.1530 2.1379 46 1 1.8636 -2.7086 2.0770 47 1 0.3210 -1.9783 1.5771 48 1 1.7759 -2.6739 -1.9713 49 1 1.5560 -0.3164 -2.1279 50 1 3.1199 -0.5805 -1.3282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016785054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:55 Heat of formation + Delta-G solvation = -34.707206 kcal Electronic energy + Delta-G solvation = -29904.137427 eV Core-core repulsion = 25932.011770 eV Total energy + Delta-G solvation = -3972.125657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.41051 -39.89783 -38.66849 -36.90722 -35.57842 -33.80041 -33.37588 -31.76902 -30.90508 -30.02107 -28.30654 -27.48135 -25.15588 -24.40787 -23.77692 -22.54250 -21.92484 -21.07190 -20.53460 -18.90332 -18.24131 -17.87569 -16.96641 -16.73652 -16.34434 -16.19606 -15.73867 -15.22223 -15.05022 -14.87983 -14.40821 -14.15352 -14.05820 -13.72968 -13.58927 -13.44506 -13.18192 -12.91127 -12.76763 -12.63461 -12.33655 -12.26848 -12.03477 -11.72623 -11.65228 -11.51286 -11.39459 -11.29134 -11.02649 -10.78460 -10.49045 -10.38136 -10.13738 -10.04952 -10.00057 -9.74558 -9.68635 -9.54666 -9.42629 -8.57425 -8.49382 -6.69464 -5.83254 -3.26892 2.24877 2.30939 2.76456 2.93529 3.34742 3.42186 3.42836 3.91879 4.04474 4.09870 4.20215 4.22073 4.45707 4.59609 4.71897 4.84785 4.89220 4.91049 5.04081 5.05125 5.08283 5.17816 5.27904 5.34765 5.41341 5.42528 5.51447 5.57450 5.66472 5.75758 5.78188 5.97058 5.99561 6.00810 6.21923 6.32239 6.35901 6.44908 6.54996 6.57626 6.63291 6.76459 6.86099 6.89668 7.30492 7.32637 7.62427 7.75535 7.80221 8.00094 8.42036 9.17305 9.80709 10.36928 11.24419 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.002349 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.768006 B =11917.825173 C =12226.930230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C 0.530 3.470 4 O -0.532 6.532 5 N -0.691 5.691 6 C 0.067 3.933 7 H 0.133 0.867 8 C -0.182 4.182 9 C -0.095 4.095 10 C -0.097 4.097 11 C 0.150 3.850 12 N -0.589 5.589 13 C -0.255 4.255 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.173 3.827 22 C -0.106 4.106 23 C -0.099 4.099 24 C -0.137 4.137 25 C 0.521 3.479 26 O -0.558 6.558 27 N -0.716 5.716 28 C 0.122 3.878 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.400 0.600 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.254 0.746 40 H 0.090 0.910 41 H 0.018 0.982 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.402 0.598 49 H 0.084 0.916 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -19.163 5.254 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C 0.314 3.686 4 O -0.408 6.408 5 N -0.340 5.340 6 C -0.039 4.039 7 H 0.150 0.850 8 C -0.220 4.220 9 C -0.097 4.097 10 C -0.136 4.136 11 C 0.023 3.977 12 N -0.311 5.311 13 C -0.384 4.384 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.731 3.269 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.047 3.953 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.177 4.177 25 C 0.308 3.692 26 O -0.437 6.437 27 N -0.368 5.368 28 C -0.003 4.003 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.236 0.764 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.238 0.762 49 H 0.102 0.898 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.331 -19.180 6.075 20.814 hybrid contribution -0.885 0.441 -0.673 1.196 sum 4.446 -18.739 5.402 20.002 Atomic orbital electron populations 1.21960 0.91425 1.03289 1.03693 1.21118 0.98329 0.92943 0.97481 1.20053 0.80052 0.86428 0.82024 1.90716 1.37514 1.76942 1.35654 1.45430 1.52383 1.11449 1.24763 1.21950 1.03791 0.80843 0.97273 0.84972 1.23532 0.98562 1.03324 0.96583 1.21961 0.92352 0.95273 1.00076 1.21631 0.95293 0.97581 0.99123 1.20831 0.98520 0.86050 0.92304 1.43972 1.12804 1.12096 1.62249 1.19186 0.85845 0.87855 1.45553 0.91781 1.25051 0.96772 0.97416 1.00306 1.70031 1.24072 1.09670 1.50698 0.86310 0.82535 0.79989 0.78054 1.21403 1.21765 1.20439 1.20770 0.87913 0.96104 0.90541 1.21879 1.00031 0.92427 1.00175 1.21530 1.00988 0.93973 0.97215 1.21744 1.04306 0.96865 0.94779 1.20225 0.75303 0.87289 0.86350 1.90775 1.50621 1.15178 1.87078 1.45379 1.71580 1.09568 1.10291 1.21384 1.01218 0.80379 0.97276 0.91402 0.91178 0.90951 0.76445 0.89058 0.88273 0.93766 0.91732 0.92745 0.96332 0.93587 0.89157 0.96346 0.92106 0.92998 0.90307 0.89131 0.87661 0.87701 0.76173 0.89752 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.76 37.16 0.29 -0.66 16 2 C -0.09 -0.69 0.62 -155.52 -0.10 -0.79 16 3 C 0.53 5.58 6.47 -10.98 -0.07 5.51 16 4 O -0.53 -7.65 15.46 5.55 0.09 -7.57 16 5 N -0.69 -7.01 5.15 -53.87 -0.28 -7.29 16 6 C 0.07 0.86 6.14 -68.00 -0.42 0.44 16 7 H 0.13 1.89 7.40 -51.93 -0.38 1.50 16 8 C -0.18 -2.35 9.87 -26.79 -0.26 -2.61 16 9 C -0.10 -1.42 1.94 -154.49 -0.30 -1.72 16 10 C -0.10 -1.45 5.37 -26.45 -0.14 -1.59 16 11 C 0.15 2.88 6.51 -3.68 -0.02 2.86 16 12 N -0.59 -13.97 2.94 -172.26 -0.51 -14.48 16 13 C -0.25 -6.73 9.54 -15.06 -0.14 -6.87 16 14 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 15 C 0.00 0.09 4.89 -17.43 -0.09 0.01 16 16 N -0.90 -25.44 11.23 55.49 0.62 -24.82 16 17 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.17 3.90 5.40 -3.67 -0.02 3.88 16 22 C -0.11 -1.90 5.83 -26.46 -0.15 -2.05 16 23 C -0.10 -0.74 4.35 -26.52 -0.12 -0.85 16 24 C -0.14 -0.95 5.39 -28.10 -0.15 -1.10 16 25 C 0.52 4.77 6.91 -11.87 -0.08 4.68 16 26 O -0.56 -7.42 17.78 5.56 0.10 -7.32 16 27 N -0.72 -4.83 5.33 -61.34 -0.33 -5.16 16 28 C 0.12 0.71 5.70 -4.45 -0.03 0.69 16 29 H 0.07 0.40 7.58 -51.93 -0.39 0.00 16 30 H 0.07 0.43 5.80 -51.93 -0.30 0.13 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.40 3.25 6.19 -40.82 -0.25 3.00 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.04 0.52 6.75 -51.93 -0.35 0.17 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.03 7.92 -51.93 -0.41 0.62 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.09 2.33 5.93 -51.93 -0.31 2.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 44 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 45 H 0.09 0.73 7.89 -51.93 -0.41 0.32 16 46 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.62 6.95 -51.93 -0.36 0.26 16 48 H 0.40 2.34 8.80 -40.82 -0.36 1.98 16 49 H 0.08 0.34 7.83 -51.92 -0.41 -0.06 16 50 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -32.74 386.20 -9.45 -42.19 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.13 Total: 2.68 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.80 Total: -0.19 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.49 Total: -51.74 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.18 Total: -14.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.74 -9.45 -42.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016785054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.481 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds