Wall clock time and date at job start Tue Mar 31 2020 19:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.73596 * 2 1 4 4 O 1.21283 * 119.99894 * 120.40988 * 3 2 1 5 5 N 1.34777 * 120.00056 * 300.40219 * 3 2 1 6 6 C 1.46500 * 120.00027 * 180.02562 * 5 3 2 7 7 C 1.53144 * 109.43495 * 119.87376 * 6 5 3 8 8 C 1.53703 * 108.87655 * 66.16885 * 7 6 5 9 9 H 1.09001 * 112.09898 * 187.61936 * 8 7 6 10 10 C 1.54603 * 107.83392 * 312.23588 * 8 7 6 11 11 C 1.54310 * 104.75555 * 88.66885 * 10 8 7 12 12 C 1.54614 * 104.74598 * 359.97438 * 11 10 8 13 13 H 1.09002 * 112.68983 * 147.08485 * 12 11 10 14 14 C 1.53148 * 109.43294 * 240.09178 * 6 5 3 15 15 N 1.48292 * 107.27285 * 64.01516 * 8 7 6 16 16 C 1.36939 * 128.21020 * 107.43532 * 15 8 7 17 17 H 1.08000 * 119.99746 * 162.38166 * 16 15 8 18 18 C 1.38812 * 119.99973 * 342.38008 * 16 15 8 19 19 N 1.31618 * 120.00000 * 2.38905 * 18 16 15 20 20 Si 1.86796 * 119.99811 * 182.38502 * 18 16 15 21 21 H 1.48502 * 109.47236 * 60.00330 * 20 18 16 22 22 H 1.48502 * 109.47039 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47265 * 299.99896 * 20 18 16 24 24 C 1.53351 * 109.60484 * 120.40969 * 2 1 3 25 25 C 1.53069 * 108.42432 * 52.21913 * 24 2 1 26 26 C 1.50177 * 109.88721 * 48.90881 * 25 24 2 27 27 O 1.21283 * 118.24373 * 162.41567 * 26 25 24 28 28 N 1.33352 * 123.51010 * 342.69035 * 26 25 24 29 29 C 1.45733 * 124.11748 * 1.65755 * 28 26 25 30 30 H 1.09001 * 109.47461 * 299.59563 * 1 2 3 31 31 H 1.09006 * 109.47210 * 59.59362 * 1 2 3 32 32 H 1.08999 * 109.47497 * 179.59227 * 1 2 3 33 33 H 0.97006 * 119.99491 * 0.02562 * 5 3 2 34 34 H 1.08994 * 109.43324 * 359.95924 * 6 5 3 35 35 H 1.08999 * 109.56934 * 185.99465 * 7 6 5 36 36 H 1.09005 * 109.56726 * 306.35036 * 7 6 5 37 37 H 1.09000 * 110.38122 * 207.49012 * 10 8 7 38 38 H 1.08998 * 110.38340 * 329.84744 * 10 8 7 39 39 H 1.08997 * 110.38360 * 241.17802 * 11 10 8 40 40 H 1.09001 * 110.47672 * 118.85979 * 11 10 8 41 41 H 1.08998 * 109.56941 * 53.64762 * 14 6 5 42 42 H 1.08996 * 109.56712 * 174.00634 * 14 6 5 43 43 H 0.97002 * 119.99952 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.66968 * 292.48872 * 24 2 1 45 45 H 1.09001 * 109.67403 * 171.96036 * 24 2 1 46 46 H 1.08999 * 109.40202 * 288.77693 * 25 24 2 47 47 H 1.09004 * 109.32859 * 168.98626 * 25 24 2 48 48 H 0.97003 * 117.94900 * 181.92181 * 28 26 25 49 49 H 1.09005 * 109.43959 * 220.98394 * 29 28 26 50 50 H 1.09000 * 108.92583 * 101.54547 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0388 1.4185 0.0000 4 8 2.7440 1.8097 0.9059 5 7 1.7104 2.2522 -1.0067 6 6 2.2056 3.6310 -1.0070 7 6 3.0514 3.8684 -2.2614 8 6 2.1424 3.7816 -3.4978 9 1 2.7108 3.8104 -4.4275 10 6 1.2818 2.5043 -3.3641 11 6 0.0292 2.9543 -2.5833 12 6 0.2510 4.4613 -2.3182 13 1 -0.6796 5.0288 -2.3132 14 6 1.0186 4.5987 -0.9943 15 7 1.1645 4.8925 -3.4042 16 6 1.1162 6.0432 -4.1449 17 1 0.2086 6.6278 -4.1759 18 6 2.2339 6.4584 -4.8558 19 7 3.3247 5.7219 -4.8559 20 14 2.1897 8.0623 -5.8123 21 1 1.9189 9.1868 -4.8809 22 1 3.4986 8.2765 -6.4803 23 1 1.1164 7.9984 -6.8366 24 6 2.0445 -0.7312 1.2459 25 6 1.3687 -2.1029 1.3154 26 6 1.4708 -2.7907 -0.0157 27 8 1.2863 -3.9887 -0.0583 28 7 1.7586 -2.1557 -1.1524 29 6 2.0430 -0.7292 -1.2424 30 1 -0.3634 0.5075 0.8936 31 1 -0.3634 0.5202 -0.8864 32 1 -0.3634 -1.0276 -0.0073 33 1 1.1461 1.9393 -1.7311 34 1 2.8173 3.7968 -0.1203 35 1 3.5078 4.8571 -2.2123 36 1 3.8297 3.1080 -2.3263 37 1 1.0014 2.1306 -4.3489 38 1 1.8221 1.7392 -2.8065 39 1 -0.0469 2.4106 -1.6417 40 1 -0.8686 2.8020 -3.1824 41 1 0.3580 4.3552 -0.1623 42 1 1.3820 5.6207 -0.8872 43 1 4.1059 6.0122 -5.3524 44 1 1.7977 -0.1550 2.1376 45 1 3.1250 -0.8574 1.1773 46 1 0.3184 -1.9762 1.5779 47 1 1.8613 -2.7097 2.0752 48 1 1.7762 -2.6751 -1.9715 49 1 1.5580 -0.3177 -2.1276 50 1 3.1208 -0.5881 -1.3237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021357746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:33 Heat of formation + Delta-G solvation = 21.525991 kcal Electronic energy + Delta-G solvation = -31805.402459 eV Core-core repulsion = 27835.715256 eV Total energy + Delta-G solvation = -3969.687203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.65328 -40.51067 -38.71457 -36.67797 -34.34667 -33.62053 -32.31401 -31.74176 -30.64092 -30.22384 -28.98388 -27.30280 -25.06040 -24.71580 -23.41015 -23.13281 -21.56315 -20.57037 -19.69438 -19.64871 -18.47023 -17.68487 -17.08399 -16.79619 -16.20508 -15.90284 -15.17691 -14.92023 -14.87265 -14.75311 -14.27623 -13.91731 -13.79121 -13.49026 -13.24247 -13.01615 -12.94941 -12.68848 -12.50790 -12.38047 -12.21691 -11.96657 -11.80988 -11.67680 -11.58337 -11.30034 -11.10790 -11.05522 -10.94532 -10.72760 -10.48602 -10.37354 -10.07089 -9.96769 -9.87413 -9.59762 -9.47802 -9.45751 -9.35546 -8.70358 -8.30090 -6.89784 -5.84774 -3.24447 2.41188 2.68553 3.03995 3.32957 3.38752 3.39153 3.42228 4.15257 4.36133 4.37773 4.39131 4.45352 4.85668 4.92407 5.01479 5.06440 5.11889 5.24931 5.28302 5.32021 5.36264 5.42638 5.53783 5.57210 5.57827 5.67339 5.71856 5.75292 5.80945 5.89919 5.92704 5.95906 6.08869 6.20999 6.43137 6.44714 6.47955 6.49750 6.54584 6.69318 6.79841 6.90843 7.02780 7.04429 7.40589 7.50115 7.66176 7.78130 7.96351 8.16969 8.42322 9.04632 9.65832 10.43508 11.25077 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.003143 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.023200 B = 8907.222618 C = 9139.228183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C 0.509 3.491 4 O -0.547 6.547 5 N -0.731 5.731 6 C 0.141 3.859 7 C -0.124 4.124 8 C 0.176 3.824 9 H 0.123 0.877 10 C -0.174 4.174 11 C -0.164 4.164 12 C 0.150 3.850 13 H 0.068 0.932 14 C -0.137 4.137 15 N -0.583 5.583 16 C -0.226 4.226 17 H 0.075 0.925 18 C -0.001 4.001 19 N -0.912 5.912 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C -0.098 4.098 25 C -0.137 4.137 26 C 0.521 3.479 27 O -0.561 6.561 28 N -0.714 5.714 29 C 0.119 3.881 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.427 0.573 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.255 0.745 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.402 0.598 49 H 0.085 0.915 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 -11.761 8.055 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C 0.294 3.706 4 O -0.425 6.425 5 N -0.403 5.403 6 C 0.037 3.963 7 C -0.164 4.164 8 C 0.069 3.931 9 H 0.140 0.860 10 C -0.214 4.214 11 C -0.203 4.203 12 C 0.041 3.959 13 H 0.086 0.914 14 C -0.178 4.178 15 N -0.304 5.304 16 C -0.354 4.354 17 H 0.092 0.908 18 C -0.198 4.198 19 N -0.558 5.558 20 Si 0.741 3.259 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.136 4.136 25 C -0.177 4.177 26 C 0.308 3.692 27 O -0.440 6.440 28 N -0.366 5.366 29 C -0.006 4.006 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.287 0.713 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.238 0.762 49 H 0.103 0.897 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.257 -11.773 8.625 15.202 hybrid contribution -0.145 0.718 -1.115 1.334 sum -4.402 -11.055 7.510 14.071 Atomic orbital electron populations 1.21976 0.91951 1.03089 1.03439 1.21108 0.97963 0.93841 0.97133 1.20265 0.80609 0.86749 0.83011 1.90664 1.37935 1.77187 1.36675 1.49110 1.52413 1.13179 1.25613 1.21123 0.95600 0.79490 1.00106 1.22381 0.97282 1.01958 0.94802 1.21689 0.89757 0.83168 0.98480 0.85956 1.23466 0.97377 1.01030 0.99525 1.23320 0.98301 0.99468 0.99240 1.21522 0.93860 0.91978 0.88491 0.91377 1.22488 0.97290 0.99623 0.98368 1.45132 1.30213 1.18734 1.36299 1.18929 0.96473 0.98118 1.21907 0.90759 1.24891 0.95280 0.98433 1.01202 1.69731 1.03228 1.37550 1.45340 0.86231 0.76731 0.83455 0.79499 1.21115 1.21598 1.21189 1.21512 1.00955 0.93782 0.97352 1.21746 1.04149 0.97045 0.94749 1.20219 0.75331 0.87249 0.86391 1.90762 1.50908 1.15219 1.87139 1.45377 1.71213 1.09710 1.10295 1.21437 1.01424 0.80193 0.97559 0.91084 0.91556 0.91303 0.71303 0.89889 0.90006 0.93747 0.92119 0.90844 0.90426 0.92083 0.93366 0.90792 0.93480 0.89294 0.90361 0.87845 0.87821 0.76197 0.89721 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.75 37.15 0.29 -0.94 16 2 C -0.10 -0.95 0.63 -155.52 -0.10 -1.05 16 3 C 0.51 6.89 6.48 -10.99 -0.07 6.82 16 4 O -0.55 -9.34 15.22 5.56 0.08 -9.26 16 5 N -0.73 -10.11 2.58 -53.66 -0.14 -10.25 16 6 C 0.14 2.39 3.15 -67.78 -0.21 2.17 16 7 C -0.12 -2.41 5.48 -26.29 -0.14 -2.56 16 8 C 0.18 3.62 3.20 -65.74 -0.21 3.41 16 9 H 0.12 2.96 6.06 -51.93 -0.31 2.65 16 10 C -0.17 -2.75 5.76 -25.20 -0.15 -2.90 16 11 C -0.16 -2.42 5.76 -25.20 -0.15 -2.56 16 12 C 0.15 2.71 4.32 -65.75 -0.28 2.43 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.14 -2.35 5.49 -26.32 -0.14 -2.49 16 15 N -0.58 -13.03 2.83 -152.77 -0.43 -13.47 16 16 C -0.23 -5.73 10.39 -15.06 -0.16 -5.89 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C 0.00 -0.02 5.49 -17.43 -0.10 -0.12 16 19 N -0.91 -24.22 10.55 55.49 0.59 -23.64 16 20 Si 0.91 20.74 29.55 -169.99 -5.02 15.72 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.10 -0.93 4.35 -26.51 -0.12 -1.04 16 25 C -0.14 -1.17 5.39 -28.10 -0.15 -1.32 16 26 C 0.52 5.66 6.89 -11.87 -0.08 5.58 16 27 O -0.56 -8.27 17.78 5.55 0.10 -8.17 16 28 N -0.71 -6.37 5.32 -61.40 -0.33 -6.70 16 29 C 0.12 1.04 5.69 -4.49 -0.03 1.02 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.54 6.48 -51.93 -0.34 0.20 16 32 H 0.07 0.53 5.80 -51.93 -0.30 0.23 16 33 H 0.43 5.37 1.16 -65.45 -0.08 5.30 16 34 H 0.08 1.51 6.90 -51.93 -0.36 1.16 16 35 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.00 4.46 -51.93 -0.23 0.77 16 39 H 0.08 0.98 4.08 -51.93 -0.21 0.77 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 45 H 0.08 0.80 8.13 -51.93 -0.42 0.37 16 46 H 0.10 0.75 6.96 -51.93 -0.36 0.39 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.40 3.19 8.80 -40.82 -0.36 2.83 16 49 H 0.08 0.65 7.07 -51.93 -0.37 0.28 16 50 H 0.08 0.70 8.11 -51.93 -0.42 0.27 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -30.31 362.69 -9.00 -39.31 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.52 Total: 10.44 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.79 Total: 0.55 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.31 Total: -54.05 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.31 -9.00 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021357746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.840 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds