Wall clock time and date at job start Tue Mar 31 2020 19:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.73596 * 2 1 4 4 O 1.21283 * 119.99894 * 120.40988 * 3 2 1 5 5 N 1.34777 * 120.00056 * 300.40219 * 3 2 1 6 6 C 1.46500 * 120.00027 * 180.02562 * 5 3 2 7 7 C 1.53144 * 109.43495 * 119.87376 * 6 5 3 8 8 C 1.53703 * 108.87655 * 66.16885 * 7 6 5 9 9 H 1.09001 * 112.09898 * 187.61936 * 8 7 6 10 10 C 1.54603 * 107.83392 * 312.23588 * 8 7 6 11 11 C 1.54310 * 104.75555 * 88.66885 * 10 8 7 12 12 C 1.54614 * 104.74598 * 359.97438 * 11 10 8 13 13 H 1.09002 * 112.68983 * 147.08485 * 12 11 10 14 14 C 1.53148 * 109.43294 * 240.09178 * 6 5 3 15 15 N 1.48292 * 107.27285 * 64.01516 * 8 7 6 16 16 C 1.36939 * 128.21020 * 107.43532 * 15 8 7 17 17 H 1.08000 * 119.99746 * 162.38166 * 16 15 8 18 18 C 1.38812 * 119.99973 * 342.38008 * 16 15 8 19 19 N 1.31618 * 120.00000 * 2.38905 * 18 16 15 20 20 Si 1.86796 * 119.99811 * 182.38502 * 18 16 15 21 21 H 1.48502 * 109.47236 * 60.00330 * 20 18 16 22 22 H 1.48502 * 109.47039 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47265 * 299.99896 * 20 18 16 24 24 C 1.53351 * 109.60484 * 120.40969 * 2 1 3 25 25 C 1.53069 * 108.42432 * 52.21913 * 24 2 1 26 26 C 1.50177 * 109.88721 * 48.90881 * 25 24 2 27 27 O 1.21283 * 118.24373 * 162.41567 * 26 25 24 28 28 N 1.33352 * 123.51010 * 342.69035 * 26 25 24 29 29 C 1.45733 * 124.11748 * 1.65755 * 28 26 25 30 30 H 1.09001 * 109.47461 * 299.59563 * 1 2 3 31 31 H 1.09006 * 109.47210 * 59.59362 * 1 2 3 32 32 H 1.08999 * 109.47497 * 179.59227 * 1 2 3 33 33 H 0.97006 * 119.99491 * 0.02562 * 5 3 2 34 34 H 1.08994 * 109.43324 * 359.95924 * 6 5 3 35 35 H 1.08999 * 109.56934 * 185.99465 * 7 6 5 36 36 H 1.09005 * 109.56726 * 306.35036 * 7 6 5 37 37 H 1.09000 * 110.38122 * 207.49012 * 10 8 7 38 38 H 1.08998 * 110.38340 * 329.84744 * 10 8 7 39 39 H 1.08997 * 110.38360 * 241.17802 * 11 10 8 40 40 H 1.09001 * 110.47672 * 118.85979 * 11 10 8 41 41 H 1.08998 * 109.56941 * 53.64762 * 14 6 5 42 42 H 1.08996 * 109.56712 * 174.00634 * 14 6 5 43 43 H 0.97002 * 119.99952 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.66968 * 292.48872 * 24 2 1 45 45 H 1.09001 * 109.67403 * 171.96036 * 24 2 1 46 46 H 1.08999 * 109.40202 * 288.77693 * 25 24 2 47 47 H 1.09004 * 109.32859 * 168.98626 * 25 24 2 48 48 H 0.97003 * 117.94900 * 181.92181 * 28 26 25 49 49 H 1.09005 * 109.43959 * 220.98394 * 29 28 26 50 50 H 1.09000 * 108.92583 * 101.54547 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0388 1.4185 0.0000 4 8 2.7440 1.8097 0.9059 5 7 1.7104 2.2522 -1.0067 6 6 2.2056 3.6310 -1.0070 7 6 3.0514 3.8684 -2.2614 8 6 2.1424 3.7816 -3.4978 9 1 2.7108 3.8104 -4.4275 10 6 1.2818 2.5043 -3.3641 11 6 0.0292 2.9543 -2.5833 12 6 0.2510 4.4613 -2.3182 13 1 -0.6796 5.0288 -2.3132 14 6 1.0186 4.5987 -0.9943 15 7 1.1645 4.8925 -3.4042 16 6 1.1162 6.0432 -4.1449 17 1 0.2086 6.6278 -4.1759 18 6 2.2339 6.4584 -4.8558 19 7 3.3247 5.7219 -4.8559 20 14 2.1897 8.0623 -5.8123 21 1 1.9189 9.1868 -4.8809 22 1 3.4986 8.2765 -6.4803 23 1 1.1164 7.9984 -6.8366 24 6 2.0445 -0.7312 1.2459 25 6 1.3687 -2.1029 1.3154 26 6 1.4708 -2.7907 -0.0157 27 8 1.2863 -3.9887 -0.0583 28 7 1.7586 -2.1557 -1.1524 29 6 2.0430 -0.7292 -1.2424 30 1 -0.3634 0.5075 0.8936 31 1 -0.3634 0.5202 -0.8864 32 1 -0.3634 -1.0276 -0.0073 33 1 1.1461 1.9393 -1.7311 34 1 2.8173 3.7968 -0.1203 35 1 3.5078 4.8571 -2.2123 36 1 3.8297 3.1080 -2.3263 37 1 1.0014 2.1306 -4.3489 38 1 1.8221 1.7392 -2.8065 39 1 -0.0469 2.4106 -1.6417 40 1 -0.8686 2.8020 -3.1824 41 1 0.3580 4.3552 -0.1623 42 1 1.3820 5.6207 -0.8872 43 1 4.1059 6.0122 -5.3524 44 1 1.7977 -0.1550 2.1376 45 1 3.1250 -0.8574 1.1773 46 1 0.3184 -1.9762 1.5779 47 1 1.8613 -2.7097 2.0752 48 1 1.7762 -2.6751 -1.9715 49 1 1.5580 -0.3177 -2.1276 50 1 3.1208 -0.5881 -1.3237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021357746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:32 Heat of formation + Delta-G solvation = 2.206647 kcal Electronic energy + Delta-G solvation = -31806.240209 eV Core-core repulsion = 27835.715256 eV Total energy + Delta-G solvation = -3970.524952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.82866 -41.51883 -39.86605 -37.64866 -35.86850 -34.39508 -33.95404 -32.96717 -31.96621 -31.48702 -30.54352 -27.99452 -26.56333 -25.64913 -24.82838 -24.28941 -22.80478 -21.70656 -21.16279 -21.00030 -19.63684 -18.73870 -18.39979 -17.77438 -17.11213 -16.83990 -16.72540 -16.10858 -15.98453 -15.83285 -15.61227 -15.08740 -14.76747 -14.63066 -14.53939 -14.43298 -14.33480 -13.90016 -13.67391 -13.41167 -13.31597 -13.25336 -13.02618 -12.90147 -12.74602 -12.64778 -12.52259 -12.36109 -12.09847 -12.03823 -11.91085 -11.81645 -11.65334 -11.42516 -11.13955 -10.99760 -10.82069 -10.66094 -10.51900 -10.13799 -9.61692 -8.69417 -7.78811 -5.17606 1.49240 1.50671 1.56081 1.58924 1.63405 2.19546 2.38235 2.52301 3.36512 3.40044 3.52911 3.58214 3.62947 3.68030 3.95520 3.97060 4.07123 4.18100 4.19275 4.28969 4.31089 4.39085 4.42140 4.46245 4.55110 4.59638 4.69871 4.74468 4.81508 4.83250 4.92855 4.97721 4.99433 5.04988 5.10985 5.13749 5.16473 5.29204 5.30449 5.32580 5.46689 5.59605 5.62572 5.79326 5.84045 5.90162 6.27205 6.35903 6.62617 7.14365 7.18106 7.29974 7.80184 8.59423 9.28679 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.003143 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.023200 B = 8907.222618 C = 9139.228183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C 0.513 3.487 4 O -0.581 6.581 5 N -0.722 5.722 6 C 0.154 3.846 7 C -0.114 4.114 8 C 0.168 3.832 9 H 0.081 0.919 10 C -0.164 4.164 11 C -0.151 4.151 12 C 0.140 3.860 13 H 0.071 0.929 14 C -0.130 4.130 15 N -0.606 5.606 16 C -0.231 4.231 17 H 0.074 0.926 18 C -0.054 4.054 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.280 1.280 24 C -0.095 4.095 25 C -0.129 4.129 26 C 0.519 3.481 27 O -0.604 6.604 28 N -0.703 5.703 29 C 0.117 3.883 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.434 0.566 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.245 0.755 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.408 0.592 49 H 0.105 0.895 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 -13.393 8.800 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C 0.299 3.701 4 O -0.460 6.460 5 N -0.395 5.395 6 C 0.049 3.951 7 C -0.155 4.155 8 C 0.062 3.938 9 H 0.099 0.901 10 C -0.203 4.203 11 C -0.190 4.190 12 C 0.034 3.966 13 H 0.089 0.911 14 C -0.171 4.171 15 N -0.327 5.327 16 C -0.361 4.361 17 H 0.092 0.908 18 C -0.248 4.248 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.211 1.211 22 H -0.225 1.225 23 H -0.206 1.206 24 C -0.133 4.133 25 C -0.168 4.168 26 C 0.307 3.693 27 O -0.487 6.487 28 N -0.353 5.353 29 C -0.007 4.007 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.295 0.705 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.141 0.859 47 H 0.129 0.871 48 H 0.245 0.755 49 H 0.123 0.877 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.423 -13.412 9.363 17.573 hybrid contribution 0.551 1.264 -1.307 1.900 sum -5.871 -12.148 8.056 15.715 Atomic orbital electron populations 1.22034 0.90100 1.04144 1.04257 1.21057 0.99292 0.91051 0.97882 1.20840 0.79510 0.87840 0.81873 1.90665 1.39337 1.78108 1.37932 1.48903 1.52494 1.11871 1.26222 1.20731 0.95111 0.81374 0.97917 1.22188 0.97592 0.99599 0.96096 1.21576 0.90167 0.85234 0.96870 0.90064 1.23354 0.97130 0.99016 1.00835 1.23243 0.98255 0.96774 1.00756 1.21783 0.93136 0.94301 0.87428 0.91110 1.22389 0.97465 0.98258 0.98955 1.45337 1.31360 1.18550 1.37460 1.19215 0.96277 0.99030 1.21531 0.90781 1.25525 0.95420 1.00951 1.02890 1.69947 1.03381 1.38490 1.46282 0.85359 0.76143 0.80628 0.78363 1.21057 1.22509 1.20612 1.21471 1.00440 0.94209 0.97157 1.21735 1.05332 0.96080 0.93702 1.20586 0.74603 0.86746 0.87338 1.90753 1.53127 1.17032 1.87741 1.45294 1.70051 1.09750 1.10246 1.21508 1.01591 0.79901 0.97723 0.90547 0.90557 0.90174 0.70461 0.91104 0.94395 0.93379 0.91472 0.88247 0.87464 0.90364 0.90646 0.93442 0.94538 0.89401 0.91425 0.85910 0.87101 0.75490 0.87723 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 7.75 71.98 0.56 -1.23 16 2 C -0.09 -1.45 0.63 -52.84 -0.03 -1.48 16 3 C 0.51 12.45 6.48 87.66 0.57 13.01 16 4 O -0.58 -18.85 15.22 -3.04 -0.05 -18.90 16 5 N -0.72 -17.89 2.58 -442.07 -1.14 -19.03 16 6 C 0.15 5.07 3.15 45.09 0.14 5.21 16 7 C -0.11 -4.54 5.48 30.88 0.17 -4.37 16 8 C 0.17 6.95 3.20 45.43 0.15 7.10 16 9 H 0.08 4.07 6.06 -2.39 -0.01 4.06 16 10 C -0.16 -4.75 5.76 31.58 0.18 -4.57 16 11 C -0.15 -3.89 5.76 31.59 0.18 -3.71 16 12 C 0.14 4.84 4.32 45.41 0.20 5.04 16 13 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.13 -4.30 5.49 30.86 0.17 -4.13 16 15 N -0.61 -27.16 2.83 -637.26 -1.80 -28.96 16 16 C -0.23 -11.90 10.39 84.03 0.87 -11.03 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 18 C -0.05 -2.84 5.49 84.86 0.47 -2.37 16 19 N -0.93 -51.66 10.55 21.65 0.23 -51.43 16 20 Si 0.97 43.67 29.55 68.60 2.03 45.69 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 C -0.09 -1.54 4.35 30.74 0.13 -1.41 16 25 C -0.13 -1.83 5.39 29.71 0.16 -1.67 16 26 C 0.52 9.97 6.89 87.71 0.60 10.57 16 27 O -0.60 -16.81 17.78 -3.04 -0.05 -16.86 16 28 N -0.70 -10.46 5.32 -467.35 -2.49 -12.95 16 29 C 0.12 1.65 5.69 86.50 0.49 2.14 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.79 6.48 -2.38 -0.02 0.78 16 32 H 0.08 0.85 5.80 -2.39 -0.01 0.83 16 33 H 0.43 9.21 1.16 -115.84 -0.13 9.08 16 34 H 0.07 2.57 6.90 -2.39 -0.02 2.55 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 2.34 4.46 -2.39 -0.01 2.33 16 39 H 0.11 2.15 4.08 -2.39 -0.01 2.14 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 44 H 0.09 1.49 7.90 -2.39 -0.02 1.47 16 45 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 46 H 0.12 1.31 6.96 -2.39 -0.02 1.29 16 47 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.41 5.35 8.80 -92.71 -0.82 4.54 16 49 H 0.10 1.10 7.07 -2.38 -0.02 1.09 16 50 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 Total: -1.00 -68.94 362.69 1.76 -67.18 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.03 Total: 28.13 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.01 Total: 7.12 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -5.20 Total: -112.36 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.10 Total: -35.76 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.94 1.76 -67.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021357746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.382 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds