Wall clock time and date at job start Tue Mar 31 2020 19:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 110.21575 * 2 1 4 4 O 1.21277 * 120.00404 * 111.02766 * 3 2 1 5 5 N 1.34778 * 120.00023 * 291.02356 * 3 2 1 6 6 C 1.46944 * 120.55023 * 357.70959 * 5 3 2 7 7 C 1.53343 * 108.68557 * 125.62724 * 6 5 3 8 8 C 1.52104 * 109.44247 * 53.30210 * 7 6 5 9 9 C 1.54389 * 110.51091 * 64.09020 * 8 7 6 10 10 C 1.54457 * 102.86916 * 83.32561 * 9 8 7 11 11 N 1.47081 * 107.29824 * 21.50976 * 10 9 8 12 12 C 1.36936 * 125.63270 * 180.96022 * 11 10 9 13 13 H 1.07998 * 120.00361 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99942 * 0.03078 * 12 11 10 15 15 N 1.31623 * 119.99573 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46982 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47079 * 299.99442 * 16 14 12 19 19 H 1.48497 * 109.47137 * 59.99692 * 16 14 12 20 20 C 1.47574 * 108.74236 * 1.22929 * 11 10 9 21 21 C 1.52108 * 111.60277 * 300.69342 * 8 7 6 22 22 C 1.46930 * 120.55596 * 177.68524 * 5 3 2 23 23 C 1.54480 * 110.25042 * 121.92578 * 2 1 3 24 24 C 1.54620 * 101.76538 * 144.50222 * 23 2 1 25 25 C 1.51278 * 104.19885 * 335.20410 * 24 23 2 26 26 O 1.21283 * 124.94638 * 196.27477 * 25 24 23 27 27 N 1.34624 * 110.14828 * 16.23248 * 25 24 23 28 28 H 1.08994 * 109.47422 * 59.29973 * 1 2 3 29 29 H 1.09003 * 109.46953 * 179.30300 * 1 2 3 30 30 H 1.09001 * 109.46757 * 299.30154 * 1 2 3 31 31 H 1.09004 * 109.60080 * 5.86525 * 6 5 3 32 32 H 1.08997 * 109.60012 * 245.38326 * 6 5 3 33 33 H 1.08999 * 109.47218 * 293.31135 * 7 6 5 34 34 H 1.08996 * 109.47672 * 173.29876 * 7 6 5 35 35 H 1.09001 * 110.73311 * 324.99249 * 9 8 7 36 36 H 1.08997 * 110.73580 * 201.67401 * 9 8 7 37 37 H 1.08998 * 109.88510 * 262.08546 * 10 9 8 38 38 H 1.09001 * 110.00366 * 140.99912 * 10 9 8 39 39 H 0.96999 * 119.99299 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.38330 * 95.25734 * 20 11 10 41 41 H 1.09002 * 110.38005 * 217.61145 * 20 11 10 42 42 H 1.08997 * 109.47748 * 179.29335 * 21 8 7 43 43 H 1.08997 * 109.47123 * 299.30980 * 21 8 7 44 44 H 1.08997 * 109.59879 * 354.12871 * 22 5 3 45 45 H 1.09000 * 109.60166 * 114.61213 * 22 5 3 46 46 H 1.08997 * 110.96944 * 262.62529 * 23 2 1 47 47 H 1.09002 * 110.96737 * 26.38279 * 23 2 1 48 48 H 1.08998 * 110.48619 * 93.88798 * 24 23 2 49 49 H 1.09004 * 110.48718 * 216.39283 * 24 23 2 50 50 H 0.97000 * 124.47148 * 180.46343 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.6139 1.8530 0.9803 5 7 1.8907 2.1913 -1.0895 6 6 1.2550 1.6564 -2.3016 7 6 0.0864 2.5710 -2.6879 8 6 0.5796 4.0060 -2.7921 9 6 1.6095 4.1425 -3.9342 10 6 0.7172 4.3124 -5.1835 11 7 -0.5965 4.7856 -4.7216 12 6 -1.6786 5.0413 -5.5209 13 1 -2.6033 5.3875 -5.0835 14 6 -1.5870 4.8554 -6.8935 15 7 -0.4598 4.4338 -7.4266 16 14 -3.0632 5.2035 -7.9838 17 1 -2.7086 4.9292 -9.3995 18 1 -4.1946 4.3312 -7.5785 19 1 -3.4598 6.6274 -7.8403 20 6 -0.5542 4.9455 -3.2552 21 6 1.1734 4.4909 -1.4784 22 6 2.3483 3.5874 -1.0850 23 6 2.0647 -0.7664 1.2301 24 6 3.3300 -1.4433 0.6543 25 6 3.0548 -1.5428 -0.8299 26 8 3.6615 -2.2537 -1.6029 27 7 2.0379 -0.7282 -1.1686 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5030 0.8962 31 1 0.8831 0.6506 -2.1060 32 1 1.9815 1.6287 -3.1136 33 1 -0.6911 2.5083 -1.9266 34 1 -0.3197 2.2555 -3.6489 35 1 2.2182 3.2418 -4.0146 36 1 2.2366 5.0215 -3.7854 37 1 0.6080 3.3556 -5.6940 38 1 1.1581 5.0449 -5.8597 39 1 -0.3957 4.3043 -8.3858 40 1 -0.3256 5.9783 -2.9923 41 1 -1.5028 4.6414 -2.8126 42 1 1.5262 5.5156 -1.5952 43 1 0.4111 4.4555 -0.7001 44 1 2.6970 3.8547 -0.0874 45 1 3.1593 3.7088 -1.8031 46 1 2.3223 -0.0794 2.0361 47 1 1.3442 -1.5107 1.5694 48 1 4.2098 -0.8269 0.8387 49 1 3.4627 -2.4349 1.0870 50 1 1.6856 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035223067.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:05 Heat of formation + Delta-G solvation = -29.231742 kcal Electronic energy + Delta-G solvation = -31212.359479 eV Core-core repulsion = 27240.471256 eV Total energy + Delta-G solvation = -3971.888223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.69492 -39.85534 -38.64256 -36.71563 -35.99276 -33.26953 -31.97837 -31.45959 -30.67678 -30.59639 -28.78861 -27.00688 -25.30323 -24.39215 -23.57479 -23.30692 -21.79401 -21.03561 -20.10617 -20.01659 -18.38634 -17.46594 -17.14458 -16.69407 -16.26846 -15.60989 -15.29244 -15.15432 -14.85785 -14.55117 -14.31376 -14.14168 -13.90430 -13.79209 -13.59491 -13.40311 -13.03183 -12.88413 -12.75315 -12.65280 -12.48005 -12.20185 -11.96797 -11.73089 -11.52950 -11.34484 -11.18321 -11.09366 -10.96504 -10.76406 -10.67295 -10.54139 -10.26586 -10.13611 -10.06205 -9.85497 -9.71625 -9.62525 -9.25035 -8.68068 -8.61388 -6.85260 -5.74039 -3.07262 2.20459 2.31663 2.78575 3.05357 3.37514 3.42343 3.43459 3.87924 4.08507 4.15171 4.39832 4.46797 4.65649 4.73470 4.88230 4.93656 4.97422 5.10105 5.14494 5.24921 5.28968 5.33728 5.38448 5.43299 5.51580 5.53830 5.58352 5.66396 5.69421 5.71695 5.87282 5.90805 6.01680 6.07458 6.12761 6.23237 6.32483 6.41003 6.45995 6.54496 6.56049 6.64105 6.75624 6.87198 7.23316 7.53099 7.59203 7.79807 7.90350 7.93600 8.23159 9.19616 9.79953 10.46290 11.37299 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003077 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.212044 B = 9098.540721 C = 9635.411767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C 0.513 3.487 4 O -0.539 6.539 5 N -0.594 5.594 6 C 0.095 3.905 7 C -0.111 4.111 8 C -0.071 4.071 9 C -0.138 4.138 10 C 0.180 3.820 11 N -0.604 5.604 12 C -0.229 4.229 13 H 0.076 0.924 14 C -0.007 4.007 15 N -0.922 5.922 16 Si 0.910 3.090 17 H -0.290 1.290 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.147 3.853 21 C -0.115 4.115 22 C 0.113 3.887 23 C -0.114 4.114 24 C -0.157 4.157 25 C 0.521 3.479 26 O -0.528 6.528 27 N -0.723 5.723 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.252 0.748 40 H 0.018 0.982 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -8.848 17.734 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 C 0.299 3.701 4 O -0.415 6.415 5 N -0.326 5.326 6 C -0.027 4.027 7 C -0.149 4.149 8 C -0.072 4.072 9 C -0.176 4.176 10 C 0.055 3.945 11 N -0.330 5.330 12 C -0.357 4.357 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.212 1.212 19 H -0.212 1.212 20 C 0.021 3.979 21 C -0.154 4.154 22 C -0.009 4.009 23 C -0.152 4.152 24 C -0.197 4.197 25 C 0.308 3.692 26 O -0.404 6.404 27 N -0.386 5.386 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.110 0.890 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 4.759 -9.011 17.684 20.410 hybrid contribution -1.025 0.436 -1.282 1.698 sum 3.733 -8.576 16.402 18.882 Atomic orbital electron populations 1.22289 0.90990 1.04159 1.04524 1.21176 0.96456 0.89449 0.87743 1.20674 0.79319 0.87392 0.82743 1.90671 1.42771 1.74493 1.33604 1.48070 1.58715 1.12433 1.13409 1.22271 0.96251 0.97442 0.86771 1.21657 0.96093 0.94339 1.02844 1.21056 0.97250 0.95061 0.93846 1.22939 0.97410 1.00150 0.97078 1.21139 0.83611 0.99107 0.90637 1.44497 1.10143 1.78310 1.00083 1.18994 0.90269 1.38259 0.88193 0.90642 1.24780 0.97304 1.01652 0.96618 1.69955 1.24256 1.51952 1.10746 0.86227 0.81829 0.78024 0.79834 1.21626 1.21209 1.21246 1.21507 0.94951 0.95065 0.86410 1.21734 0.97308 0.98997 0.97354 1.21706 0.96850 0.79504 1.02853 1.22636 0.96574 0.99597 0.96352 1.22383 1.00284 1.04042 0.92991 1.21040 0.78806 0.78152 0.91171 1.90774 1.51487 1.40532 1.57610 1.46921 1.36829 1.43813 1.11007 0.90480 0.90306 0.90060 0.89930 0.90402 0.91956 0.89111 0.92344 0.92506 0.93744 0.94244 0.93747 0.96414 0.94541 0.90535 0.91835 0.89233 0.91189 0.87187 0.89024 0.87525 0.87638 0.74127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.45 37.16 0.31 -0.81 16 2 C 0.14 1.24 0.72 -132.05 -0.09 1.14 16 3 C 0.51 5.94 6.74 -10.98 -0.07 5.87 16 4 O -0.54 -7.55 14.85 5.56 0.08 -7.47 16 5 N -0.59 -6.84 2.96 -172.57 -0.51 -7.35 16 6 C 0.10 1.05 4.50 -3.62 -0.02 1.04 16 7 C -0.11 -1.50 4.72 -27.01 -0.13 -1.62 16 8 C -0.07 -1.07 0.55 -153.98 -0.08 -1.15 16 9 C -0.14 -2.32 4.92 -25.24 -0.12 -2.44 16 10 C 0.18 4.10 5.00 -2.96 -0.01 4.08 16 11 N -0.60 -14.51 3.38 -170.17 -0.58 -15.08 16 12 C -0.23 -6.15 10.28 -15.06 -0.15 -6.30 16 13 H 0.08 1.97 7.83 -52.49 -0.41 1.55 16 14 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 15 N -0.92 -26.34 10.31 55.49 0.57 -25.76 16 16 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.15 2.80 6.16 -2.75 -0.02 2.79 16 21 C -0.12 -1.44 4.84 -27.01 -0.13 -1.57 16 22 C 0.11 1.34 6.16 -3.63 -0.02 1.32 16 23 C -0.11 -0.83 6.07 -25.10 -0.15 -0.98 16 24 C -0.16 -1.30 6.85 -26.75 -0.18 -1.49 16 25 C 0.52 5.98 8.44 -10.77 -0.09 5.89 16 26 O -0.53 -8.23 18.03 5.55 0.10 -8.13 16 27 N -0.72 -6.91 4.72 -47.63 -0.22 -7.14 16 28 H 0.08 0.58 5.34 -51.93 -0.28 0.30 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.75 2.64 -51.93 -0.14 0.61 16 32 H 0.08 0.92 6.55 -51.93 -0.34 0.58 16 33 H 0.06 0.78 7.73 -51.93 -0.40 0.38 16 34 H 0.09 1.46 7.82 -51.93 -0.41 1.06 16 35 H 0.06 0.90 6.17 -51.93 -0.32 0.58 16 36 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 37 H 0.04 1.12 7.38 -51.93 -0.38 0.74 16 38 H 0.04 1.03 7.49 -51.93 -0.39 0.64 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 41 H 0.04 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 45 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 46 H 0.11 0.88 6.84 -51.93 -0.36 0.52 16 47 H 0.09 0.47 7.91 -51.93 -0.41 0.06 16 48 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.41 3.77 6.39 -40.82 -0.26 3.51 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -32.71 370.83 -8.83 -41.54 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.77 Total: 1.74 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.07 Total: 5.45 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.74 Total: -55.34 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.18 Total: -15.60 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.71 -8.83 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035223067.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.309 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds