Wall clock time and date at job start Tue Mar 31 2020 19:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 110.21575 * 2 1 4 4 O 1.21277 * 120.00404 * 111.02766 * 3 2 1 5 5 N 1.34778 * 120.00023 * 291.02356 * 3 2 1 6 6 C 1.46944 * 120.55023 * 357.70959 * 5 3 2 7 7 C 1.53343 * 108.68557 * 125.62724 * 6 5 3 8 8 C 1.52104 * 109.44247 * 53.30210 * 7 6 5 9 9 C 1.54389 * 110.51091 * 64.09020 * 8 7 6 10 10 C 1.54457 * 102.86916 * 83.32561 * 9 8 7 11 11 N 1.47081 * 107.29824 * 21.50976 * 10 9 8 12 12 C 1.36936 * 125.63270 * 180.96022 * 11 10 9 13 13 H 1.07998 * 120.00361 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99942 * 0.03078 * 12 11 10 15 15 N 1.31623 * 119.99573 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46982 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.47079 * 299.99442 * 16 14 12 19 19 H 1.48497 * 109.47137 * 59.99692 * 16 14 12 20 20 C 1.47574 * 108.74236 * 1.22929 * 11 10 9 21 21 C 1.52108 * 111.60277 * 300.69342 * 8 7 6 22 22 C 1.46930 * 120.55596 * 177.68524 * 5 3 2 23 23 C 1.54480 * 110.25042 * 121.92578 * 2 1 3 24 24 C 1.54620 * 101.76538 * 144.50222 * 23 2 1 25 25 C 1.51278 * 104.19885 * 335.20410 * 24 23 2 26 26 O 1.21283 * 124.94638 * 196.27477 * 25 24 23 27 27 N 1.34624 * 110.14828 * 16.23248 * 25 24 23 28 28 H 1.08994 * 109.47422 * 59.29973 * 1 2 3 29 29 H 1.09003 * 109.46953 * 179.30300 * 1 2 3 30 30 H 1.09001 * 109.46757 * 299.30154 * 1 2 3 31 31 H 1.09004 * 109.60080 * 5.86525 * 6 5 3 32 32 H 1.08997 * 109.60012 * 245.38326 * 6 5 3 33 33 H 1.08999 * 109.47218 * 293.31135 * 7 6 5 34 34 H 1.08996 * 109.47672 * 173.29876 * 7 6 5 35 35 H 1.09001 * 110.73311 * 324.99249 * 9 8 7 36 36 H 1.08997 * 110.73580 * 201.67401 * 9 8 7 37 37 H 1.08998 * 109.88510 * 262.08546 * 10 9 8 38 38 H 1.09001 * 110.00366 * 140.99912 * 10 9 8 39 39 H 0.96999 * 119.99299 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.38330 * 95.25734 * 20 11 10 41 41 H 1.09002 * 110.38005 * 217.61145 * 20 11 10 42 42 H 1.08997 * 109.47748 * 179.29335 * 21 8 7 43 43 H 1.08997 * 109.47123 * 299.30980 * 21 8 7 44 44 H 1.08997 * 109.59879 * 354.12871 * 22 5 3 45 45 H 1.09000 * 109.60166 * 114.61213 * 22 5 3 46 46 H 1.08997 * 110.96944 * 262.62529 * 23 2 1 47 47 H 1.09002 * 110.96737 * 26.38279 * 23 2 1 48 48 H 1.08998 * 110.48619 * 93.88798 * 24 23 2 49 49 H 1.09004 * 110.48718 * 216.39283 * 24 23 2 50 50 H 0.97000 * 124.47148 * 180.46343 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.6139 1.8530 0.9803 5 7 1.8907 2.1913 -1.0895 6 6 1.2550 1.6564 -2.3016 7 6 0.0864 2.5710 -2.6879 8 6 0.5796 4.0060 -2.7921 9 6 1.6095 4.1425 -3.9342 10 6 0.7172 4.3124 -5.1835 11 7 -0.5965 4.7856 -4.7216 12 6 -1.6786 5.0413 -5.5209 13 1 -2.6033 5.3875 -5.0835 14 6 -1.5870 4.8554 -6.8935 15 7 -0.4598 4.4338 -7.4266 16 14 -3.0632 5.2035 -7.9838 17 1 -2.7086 4.9292 -9.3995 18 1 -4.1946 4.3312 -7.5785 19 1 -3.4598 6.6274 -7.8403 20 6 -0.5542 4.9455 -3.2552 21 6 1.1734 4.4909 -1.4784 22 6 2.3483 3.5874 -1.0850 23 6 2.0647 -0.7664 1.2301 24 6 3.3300 -1.4433 0.6543 25 6 3.0548 -1.5428 -0.8299 26 8 3.6615 -2.2537 -1.6029 27 7 2.0379 -0.7282 -1.1686 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3633 0.5030 0.8962 31 1 0.8831 0.6506 -2.1060 32 1 1.9815 1.6287 -3.1136 33 1 -0.6911 2.5083 -1.9266 34 1 -0.3197 2.2555 -3.6489 35 1 2.2182 3.2418 -4.0146 36 1 2.2366 5.0215 -3.7854 37 1 0.6080 3.3556 -5.6940 38 1 1.1581 5.0449 -5.8597 39 1 -0.3957 4.3043 -8.3858 40 1 -0.3256 5.9783 -2.9923 41 1 -1.5028 4.6414 -2.8126 42 1 1.5262 5.5156 -1.5952 43 1 0.4111 4.4555 -0.7001 44 1 2.6970 3.8547 -0.0874 45 1 3.1593 3.7088 -1.8031 46 1 2.3223 -0.0794 2.0361 47 1 1.3442 -1.5107 1.5694 48 1 4.2098 -0.8269 0.8387 49 1 3.4627 -2.4349 1.0870 50 1 1.6856 -0.6344 -2.0675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035223067.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:04 Heat of formation + Delta-G solvation = -51.096960 kcal Electronic energy + Delta-G solvation = -31213.307626 eV Core-core repulsion = 27240.471256 eV Total energy + Delta-G solvation = -3972.836370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.54978 -40.95782 -39.77787 -37.63598 -37.31310 -34.85553 -33.04079 -32.22622 -32.18450 -31.43436 -30.44819 -28.40449 -26.34265 -25.69689 -24.60585 -24.48897 -22.78857 -22.01914 -21.69226 -20.95451 -19.57081 -18.78132 -18.14373 -17.99215 -17.24549 -16.80204 -16.51519 -16.36693 -16.16447 -15.67171 -15.64283 -15.14762 -15.02583 -14.82698 -14.65174 -14.37610 -14.16948 -13.95745 -13.89524 -13.54628 -13.47275 -13.40606 -13.21298 -12.97374 -12.89482 -12.72929 -12.35280 -12.25056 -12.17557 -12.01875 -12.00356 -11.93569 -11.76697 -11.49732 -11.45234 -11.27032 -11.06787 -10.95817 -10.66896 -10.11948 -9.67940 -8.84761 -7.82664 -5.16883 1.32453 1.45005 1.46129 1.48421 1.54774 1.89657 2.26390 2.50771 3.18285 3.29541 3.35488 3.48652 3.59475 3.69502 3.71881 3.80299 3.93058 4.07653 4.09312 4.17879 4.31302 4.36693 4.40752 4.51987 4.60946 4.64882 4.68819 4.74262 4.79719 4.81247 4.84785 4.87040 4.96780 5.02664 5.07495 5.09562 5.13211 5.15206 5.20016 5.36176 5.41650 5.48659 5.59442 5.64715 5.71177 5.82453 5.83151 6.22479 6.31121 7.00289 7.08183 7.13439 7.81804 8.46288 9.27049 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003077 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.212044 B = 9098.540721 C = 9635.411767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 C 0.511 3.489 4 O -0.562 6.562 5 N -0.596 5.596 6 C 0.105 3.895 7 C -0.105 4.105 8 C -0.057 4.057 9 C -0.122 4.122 10 C 0.190 3.810 11 N -0.623 5.623 12 C -0.239 4.239 13 H 0.080 0.920 14 C -0.065 4.065 15 N -0.950 5.950 16 Si 0.974 3.026 17 H -0.297 1.297 18 H -0.275 1.275 19 H -0.280 1.280 20 C 0.141 3.859 21 C -0.105 4.105 22 C 0.115 3.885 23 C -0.106 4.106 24 C -0.152 4.152 25 C 0.515 3.485 26 O -0.577 6.577 27 N -0.717 5.717 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.011 0.989 38 H -0.004 1.004 39 H 0.244 0.756 40 H 0.020 0.980 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.121 0.879 48 H 0.103 0.897 49 H 0.125 0.875 50 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -9.547 20.335 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 C 0.297 3.703 4 O -0.440 6.440 5 N -0.327 5.327 6 C -0.018 4.018 7 C -0.143 4.143 8 C -0.058 4.058 9 C -0.160 4.160 10 C 0.065 3.935 11 N -0.349 5.349 12 C -0.368 4.368 13 H 0.098 0.902 14 C -0.258 4.258 15 N -0.599 5.599 16 Si 0.802 3.198 17 H -0.224 1.224 18 H -0.201 1.201 19 H -0.206 1.206 20 C 0.016 3.984 21 C -0.143 4.143 22 C -0.007 4.007 23 C -0.143 4.143 24 C -0.192 4.192 25 C 0.304 3.696 26 O -0.457 6.457 27 N -0.378 5.378 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.029 0.971 38 H 0.014 0.986 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.139 0.861 48 H 0.121 0.879 49 H 0.143 0.857 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.912 -9.684 20.336 22.861 hybrid contribution -0.789 0.720 -2.062 2.322 sum 3.123 -8.964 18.274 20.592 Atomic orbital electron populations 1.22313 0.89140 1.05502 1.04730 1.21319 0.97695 0.87709 0.87978 1.21174 0.78664 0.88321 0.82098 1.90667 1.43710 1.75245 1.34364 1.48116 1.58629 1.12434 1.13535 1.22174 0.95117 0.97954 0.86538 1.21556 0.97359 0.93575 1.01859 1.20975 0.95015 0.95346 0.94451 1.22785 0.97001 1.01405 0.94831 1.20860 0.84267 0.95900 0.92484 1.44771 1.09849 1.78054 1.02239 1.19395 0.91303 1.37228 0.88896 0.90179 1.25576 0.99847 1.02331 0.98041 1.70186 1.26086 1.53412 1.10257 0.85224 0.79005 0.78042 0.77501 1.22352 1.20143 1.20642 1.21720 0.96823 0.96110 0.83712 1.21638 0.97676 0.99396 0.95604 1.21660 0.96472 0.79639 1.02960 1.22701 0.96516 0.99816 0.95300 1.22413 1.00745 1.05326 0.90714 1.21579 0.78367 0.77428 0.92229 1.90748 1.53142 1.42653 1.59114 1.46961 1.36252 1.43083 1.11459 0.91054 0.88429 0.89076 0.87718 0.91071 0.90414 0.92043 0.90645 0.91569 0.97061 0.98607 0.94630 0.96251 0.94053 0.89913 0.90822 0.89045 0.91089 0.87491 0.86088 0.87871 0.85652 0.74099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.45 71.98 0.61 -1.03 16 2 C 0.14 2.07 0.72 3.31 0.00 2.07 16 3 C 0.51 10.50 6.74 87.66 0.59 11.09 16 4 O -0.56 -14.40 14.85 -3.02 -0.04 -14.44 16 5 N -0.60 -12.31 2.96 -818.27 -2.42 -14.73 16 6 C 0.10 2.13 4.50 86.41 0.39 2.51 16 7 C -0.11 -2.68 4.72 30.41 0.14 -2.54 16 8 C -0.06 -1.63 0.55 -51.84 -0.03 -1.66 16 9 C -0.12 -4.08 4.92 31.56 0.16 -3.93 16 10 C 0.19 9.00 5.00 86.76 0.43 9.44 16 11 N -0.62 -30.51 3.38 -692.30 -2.34 -32.86 16 12 C -0.24 -13.05 10.28 84.03 0.86 -12.19 16 13 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 15 N -0.95 -56.52 10.31 21.65 0.22 -56.30 16 16 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 17 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 C 0.14 5.29 6.16 86.63 0.53 5.83 16 21 C -0.10 -2.35 4.84 30.42 0.15 -2.20 16 22 C 0.11 2.45 6.16 86.41 0.53 2.99 16 23 C -0.11 -1.18 6.07 31.65 0.19 -0.99 16 24 C -0.15 -2.17 6.85 30.58 0.21 -1.96 16 25 C 0.52 11.07 8.44 87.86 0.74 11.81 16 26 O -0.58 -17.81 18.03 -3.04 -0.05 -17.86 16 27 N -0.72 -12.24 4.72 -423.09 -2.00 -14.23 16 28 H 0.07 0.84 5.34 -2.39 -0.01 0.82 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 1.68 2.64 -2.38 -0.01 1.67 16 32 H 0.07 1.58 6.55 -2.39 -0.02 1.57 16 33 H 0.08 1.76 7.73 -2.39 -0.02 1.74 16 34 H 0.06 1.97 7.82 -2.39 -0.02 1.95 16 35 H 0.08 2.28 6.17 -2.39 -0.01 2.26 16 36 H 0.07 2.10 7.98 -2.39 -0.02 2.08 16 37 H 0.01 0.60 7.38 -2.39 -0.02 0.58 16 38 H 0.00 -0.24 7.49 -2.39 -0.02 -0.26 16 39 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.02 0.74 8.00 -2.39 -0.02 0.72 16 41 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 42 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.09 2.00 7.00 -2.39 -0.02 1.98 16 45 H 0.07 1.52 7.62 -2.39 -0.02 1.51 16 46 H 0.11 1.37 6.84 -2.39 -0.02 1.35 16 47 H 0.12 0.68 7.91 -2.39 -0.02 0.66 16 48 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.41 6.84 6.39 -92.71 -0.59 6.24 16 Total: -1.00 -73.92 370.83 1.74 -72.18 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.37 Total: 14.94 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 5.98 Total: 16.07 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.54 Total: -118.12 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.10 Total: -32.30 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -73.92 1.74 -72.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035223067.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.080 kcal (2) G-P(sol) polarization free energy of solvation -73.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds