Wall clock time and date at job start Tue Mar 31 2020 19:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 110.43526 * 2 1 4 4 O 1.21284 * 120.00268 * 242.17849 * 3 2 1 5 5 N 1.34776 * 119.99591 * 62.18596 * 3 2 1 6 6 C 1.46938 * 120.54941 * 174.43591 * 5 3 2 7 7 C 1.53337 * 108.68917 * 234.60681 * 6 5 3 8 8 C 1.52111 * 109.44823 * 306.70749 * 7 6 5 9 9 C 1.54392 * 110.51284 * 295.90886 * 8 7 6 10 10 C 1.54453 * 102.87044 * 276.65490 * 9 8 7 11 11 N 1.47081 * 107.29694 * 338.49670 * 10 9 8 12 12 C 1.36936 * 125.62821 * 179.03387 * 11 10 9 13 13 H 1.08000 * 120.00167 * 184.99184 * 12 11 10 14 14 C 1.38815 * 120.00366 * 4.98528 * 12 11 10 15 15 N 1.31619 * 119.99264 * 5.02749 * 14 12 11 16 16 Si 1.86793 * 120.00225 * 185.02121 * 14 12 11 17 17 H 1.48493 * 109.47378 * 85.00474 * 16 14 12 18 18 H 1.48505 * 109.47049 * 205.00471 * 16 14 12 19 19 H 1.48498 * 109.47420 * 325.00045 * 16 14 12 20 20 C 1.47576 * 108.74294 * 359.01242 * 11 10 9 21 21 C 1.52113 * 111.59858 * 59.29790 * 8 7 6 22 22 C 1.46926 * 120.55421 * 354.70601 * 5 3 2 23 23 C 1.54632 * 110.48545 * 237.46362 * 2 1 3 24 24 C 1.54474 * 101.76526 * 216.38990 * 23 2 1 25 25 N 1.46768 * 105.47626 * 25.41780 * 24 23 2 26 26 C 1.34425 * 111.29483 * 342.98025 * 25 24 23 27 27 O 1.21280 * 124.93631 * 180.45213 * 26 25 24 28 28 H 1.09002 * 109.47326 * 65.81752 * 1 2 3 29 29 H 1.09001 * 109.47273 * 185.82116 * 1 2 3 30 30 H 1.09003 * 109.46728 * 305.81462 * 1 2 3 31 31 H 1.08994 * 109.59708 * 354.36773 * 6 5 3 32 32 H 1.08998 * 109.59839 * 114.84503 * 6 5 3 33 33 H 1.08996 * 109.47870 * 186.71483 * 7 6 5 34 34 H 1.09000 * 109.47745 * 66.69779 * 7 6 5 35 35 H 1.09004 * 110.73277 * 34.99679 * 9 8 7 36 36 H 1.08995 * 110.73333 * 158.12717 * 9 8 7 37 37 H 1.09004 * 109.88048 * 97.92435 * 10 9 8 38 38 H 1.09004 * 109.88054 * 219.07448 * 10 9 8 39 39 H 0.97004 * 119.99873 * 179.97438 * 15 14 12 40 40 H 1.08994 * 110.37597 * 264.48799 * 20 11 10 41 41 H 1.09000 * 110.37196 * 142.14179 * 20 11 10 42 42 H 1.08998 * 109.47626 * 180.70090 * 21 8 7 43 43 H 1.09007 * 109.47983 * 60.69307 * 21 8 7 44 44 H 1.08998 * 109.60821 * 245.15376 * 22 5 3 45 45 H 1.09006 * 109.60075 * 5.46893 * 22 5 3 46 46 H 1.09002 * 110.96832 * 334.50912 * 23 2 1 47 47 H 1.08997 * 110.96878 * 98.23362 * 23 2 1 48 48 H 1.09002 * 110.24805 * 144.41651 * 24 23 2 49 49 H 1.09000 * 110.24737 * 266.41553 * 24 23 2 50 50 H 0.96996 * 124.35002 * 162.98679 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7272 1.8093 -0.9289 5 7 1.7810 2.2337 1.0324 6 6 2.3864 3.5706 1.1048 7 6 3.1018 3.7136 2.4535 8 6 2.1347 3.3764 3.5781 9 6 0.9721 4.3917 3.6145 10 6 1.5671 5.5672 4.4207 11 7 2.6880 5.0335 5.2095 12 6 3.4925 5.7606 6.0456 13 1 4.3417 5.2919 6.5205 14 6 3.2167 7.1003 6.2828 15 7 2.1278 7.6461 5.7842 16 14 4.3908 8.1280 7.3097 17 1 5.4771 8.6521 6.4436 18 1 3.6520 9.2632 7.9187 19 1 4.9765 7.2858 8.3834 20 6 2.8021 3.5850 4.9514 21 6 1.5996 1.9582 3.4501 22 6 0.8755 1.8052 2.1071 23 6 2.0711 -0.7791 -1.2212 24 6 3.3218 -1.4650 -0.6282 25 7 3.0602 -1.5794 0.8114 26 6 2.0623 -0.7634 1.1926 27 8 1.6494 -0.6545 2.3278 28 1 -0.3634 0.4210 -0.9375 29 1 -0.3634 -1.0224 0.1042 30 1 -0.3633 0.6014 0.8334 31 1 3.1057 3.6906 0.2948 32 1 1.6083 4.3293 1.0214 33 1 3.4533 4.7386 2.5716 34 1 3.9515 3.0317 2.4883 35 1 0.7065 4.7105 2.6066 36 1 0.1066 3.9692 4.1248 37 1 1.9271 6.3388 3.7401 38 1 0.8096 5.9812 5.0863 39 1 1.9348 8.5822 5.9502 40 1 2.2744 3.0199 5.7197 41 1 3.8501 3.2878 4.9131 42 1 0.9027 1.7579 4.2638 43 1 2.4280 1.2514 3.4989 44 1 -0.0194 2.4275 2.1012 45 1 0.5965 0.7623 1.9562 46 1 1.3470 -1.5178 -1.5647 47 1 2.3442 -0.0990 -2.0280 48 1 3.4535 -2.4539 -1.0673 49 1 4.2065 -0.8529 -0.8033 50 1 3.5451 -2.1681 1.4107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035224992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:36 Heat of formation + Delta-G solvation = -45.725683 kcal Electronic energy + Delta-G solvation = -31543.687092 eV Core-core repulsion = 27571.083638 eV Total energy + Delta-G solvation = -3972.603454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.66912 -40.90359 -39.65504 -37.79314 -36.90946 -35.02864 -34.25598 -32.45717 -31.95530 -30.48023 -29.67780 -28.40462 -26.70462 -25.83347 -24.86646 -23.97693 -22.98661 -22.33984 -21.87050 -20.24875 -19.34451 -18.72928 -18.39252 -18.16683 -17.24481 -16.89104 -16.74519 -16.37935 -15.92956 -15.68189 -15.53630 -15.26874 -14.97970 -14.83613 -14.67197 -14.56655 -14.16781 -13.98085 -13.86645 -13.53863 -13.52482 -13.20930 -13.17835 -12.97284 -12.89516 -12.75870 -12.37151 -12.32462 -12.21670 -12.09857 -12.03533 -11.97668 -11.79163 -11.51399 -11.32132 -11.12540 -10.81599 -10.70949 -10.46224 -10.09709 -9.64378 -8.87028 -7.84221 -5.20425 1.17109 1.43453 1.45969 1.53914 1.57179 1.97278 2.36478 2.48709 3.16316 3.28214 3.32368 3.49458 3.59646 3.71407 3.80371 3.89377 3.93047 4.09747 4.14112 4.24677 4.31315 4.39939 4.50018 4.58539 4.64249 4.67337 4.69144 4.72962 4.76090 4.77336 4.85241 4.91453 4.92723 5.03839 5.05750 5.10465 5.13570 5.15940 5.24706 5.37472 5.41295 5.45099 5.57917 5.70226 5.73580 5.80087 5.97367 6.20609 6.35328 6.99082 7.10788 7.15049 7.78176 8.44083 9.24989 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025059 B = 0.002990 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.080769 B = 9363.281627 C = 9455.624255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.529 3.471 4 O -0.565 6.565 5 N -0.596 5.596 6 C 0.119 3.881 7 C -0.100 4.100 8 C -0.059 4.059 9 C -0.118 4.118 10 C 0.188 3.812 11 N -0.623 5.623 12 C -0.243 4.243 13 H 0.077 0.923 14 C -0.065 4.065 15 N -0.948 5.948 16 Si 0.977 3.023 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.271 1.271 20 C 0.142 3.858 21 C -0.093 4.093 22 C 0.080 3.920 23 C -0.113 4.113 24 C 0.096 3.904 25 N -0.718 5.718 26 C 0.521 3.479 27 O -0.534 6.534 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.071 0.929 37 H -0.002 1.002 38 H 0.015 0.985 39 H 0.246 0.754 40 H 0.019 0.981 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.143 0.857 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.120 0.880 49 H 0.066 0.934 50 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -22.796 -17.122 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C 0.317 3.683 4 O -0.445 6.445 5 N -0.327 5.327 6 C -0.004 4.004 7 C -0.138 4.138 8 C -0.060 4.060 9 C -0.156 4.156 10 C 0.063 3.937 11 N -0.349 5.349 12 C -0.373 4.373 13 H 0.095 0.905 14 C -0.258 4.258 15 N -0.597 5.597 16 Si 0.805 3.195 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.196 1.196 20 C 0.017 3.983 21 C -0.132 4.132 22 C -0.041 4.041 23 C -0.151 4.151 24 C -0.027 4.027 25 N -0.373 5.373 26 C 0.305 3.695 27 O -0.412 6.412 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.016 0.984 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.160 0.840 46 H 0.139 0.861 47 H 0.118 0.882 48 H 0.138 0.862 49 H 0.084 0.916 50 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.527 -22.258 -16.999 28.228 hybrid contribution 1.098 1.148 1.322 2.066 sum -2.430 -21.110 -15.677 26.406 Atomic orbital electron populations 1.22115 0.88212 1.05215 1.04692 1.21663 1.00812 0.92001 0.98033 1.20275 0.79537 0.86957 0.81564 1.90655 1.41065 1.76958 1.35796 1.48159 1.46238 1.15516 1.22816 1.21590 0.97915 0.83677 0.97175 1.21467 0.97429 1.01142 0.93779 1.20983 0.95390 0.95688 0.93977 1.22766 0.97080 0.95629 1.00144 1.20907 0.88754 0.92515 0.91558 1.44795 1.35577 1.03806 1.50724 1.19418 1.05498 0.92638 1.19709 0.90546 1.25626 0.99472 0.98308 1.02380 1.70191 1.26740 1.12105 1.50710 0.85116 0.77863 0.78153 0.78334 1.21264 1.21920 1.19581 1.21636 0.97335 0.84833 0.94483 1.21470 1.00347 0.93539 0.97845 1.22894 0.91540 1.04734 0.84966 1.22785 0.97448 0.99434 0.95393 1.22323 0.98164 1.03467 0.78755 1.46179 1.36015 1.43045 1.12066 1.20520 0.80290 0.79985 0.88664 1.90704 1.62020 1.66313 1.22128 0.89540 0.89005 0.90494 0.89867 0.90430 0.92453 0.92853 0.90292 0.90988 0.98370 0.96713 0.94443 0.96312 0.95143 0.90479 0.92500 0.90610 0.84030 0.86089 0.88166 0.86175 0.91553 0.73860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.09 71.98 0.58 -1.30 16 2 C -0.12 -2.03 0.56 -52.94 -0.03 -2.06 16 3 C 0.53 13.22 6.54 87.66 0.57 13.79 16 4 O -0.57 -16.91 14.88 -3.04 -0.05 -16.96 16 5 N -0.60 -15.72 2.96 -818.31 -2.42 -18.14 16 6 C 0.12 3.52 6.11 86.41 0.53 4.05 16 7 C -0.10 -3.46 4.85 30.41 0.15 -3.31 16 8 C -0.06 -2.09 0.55 -51.92 -0.03 -2.12 16 9 C -0.12 -4.40 4.92 31.56 0.16 -4.24 16 10 C 0.19 9.55 5.02 86.76 0.44 9.98 16 11 N -0.62 -33.39 3.39 -692.77 -2.35 -35.73 16 12 C -0.24 -14.25 10.27 84.03 0.86 -13.38 16 13 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 14 C -0.06 -3.81 5.47 84.86 0.46 -3.35 16 15 N -0.95 -58.60 10.40 21.65 0.23 -58.37 16 16 Si 0.98 47.28 29.56 68.60 2.03 49.30 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.14 6.22 6.15 86.55 0.53 6.75 16 21 C -0.09 -2.75 4.26 30.42 0.13 -2.62 16 22 C 0.08 1.95 3.98 86.41 0.34 2.29 16 23 C -0.11 -1.24 6.06 31.65 0.19 -1.05 16 24 C 0.10 0.92 7.78 86.83 0.68 1.60 16 25 N -0.72 -9.84 6.24 -459.80 -2.87 -12.70 16 26 C 0.52 10.17 6.84 87.90 0.60 10.77 16 27 O -0.53 -13.38 13.07 -3.03 -0.04 -13.42 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.16 4.78 -2.39 -0.01 1.15 16 31 H 0.08 2.55 7.02 -2.39 -0.02 2.54 16 32 H 0.08 2.22 6.55 -2.39 -0.02 2.21 16 33 H 0.06 2.32 7.82 -2.39 -0.02 2.30 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.62 6.17 -2.38 -0.01 2.61 16 36 H 0.07 2.49 7.97 -2.39 -0.02 2.47 16 37 H 0.00 -0.11 7.79 -2.38 -0.02 -0.13 16 38 H 0.01 0.85 7.11 -2.38 -0.02 0.83 16 39 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.02 0.83 7.99 -2.39 -0.02 0.81 16 41 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 42 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 43 H 0.06 1.80 7.16 -2.38 -0.02 1.78 16 44 H 0.08 1.70 7.62 -2.39 -0.02 1.68 16 45 H 0.14 3.17 1.96 -2.75 -0.01 3.16 16 46 H 0.12 0.60 7.91 -2.39 -0.02 0.58 16 47 H 0.10 1.37 6.91 -2.39 -0.02 1.36 16 48 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.42 4.54 8.96 -92.71 -0.83 3.71 16 Total: -1.00 -75.57 365.95 0.83 -74.74 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.13 Total: 15.49 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.17 Total: 15.80 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -7.41 Total: -124.95 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.08 Total: -30.38 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -75.57 0.83 -74.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035224992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.014 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds